Experiment: R2A_PIPES with Aluminum chloride 0.140625 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OKGIIK_10065 and Pro_trna are separated by 146 nucleotides Pro_trna and soxR are separated by 50 nucleotides soxR and ihfA overlap by 20 nucleotides ihfA and OKGIIK_10085 are separated by 1 nucleotides
OKGIIK_10065: OKGIIK_10065 - hypothetical protein, at 2,172,494 to 2,173,243
_10065
OKGIIK_10070: Pro_trna - tRNA-Pro, at 2,173,390 to 2,173,466
_trna
OKGIIK_10075: soxR - MerR family transcriptional regulator, at 2,173,517 to 2,173,873
soxR
OKGIIK_10080: ihfA - integration host factor subunit alpha, at 2,173,854 to 2,174,153
ihfA
OKGIIK_10085: OKGIIK_10085 - Phenylalanine--tRNA ligase beta subunit, at 2,174,155 to 2,176,584
_10085
Position (kb)
2173
2174
2175 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2172.867 kb on + strand, within OKGIIK_10065 at 2172.867 kb on + strand, within OKGIIK_10065 at 2172.868 kb on - strand, within OKGIIK_10065 at 2172.868 kb on - strand, within OKGIIK_10065 at 2172.868 kb on - strand, within OKGIIK_10065 at 2172.942 kb on + strand, within OKGIIK_10065 at 2172.942 kb on + strand, within OKGIIK_10065 at 2172.942 kb on + strand, within OKGIIK_10065 at 2172.942 kb on + strand, within OKGIIK_10065 at 2172.942 kb on + strand, within OKGIIK_10065 at 2172.942 kb on + strand, within OKGIIK_10065 at 2172.942 kb on + strand, within OKGIIK_10065 at 2172.942 kb on + strand, within OKGIIK_10065 at 2172.942 kb on + strand, within OKGIIK_10065 at 2172.942 kb on + strand, within OKGIIK_10065 at 2172.942 kb on + strand, within OKGIIK_10065 at 2172.942 kb on + strand, within OKGIIK_10065 at 2172.942 kb on + strand, within OKGIIK_10065 at 2172.942 kb on + strand, within OKGIIK_10065 at 2172.942 kb on + strand, within OKGIIK_10065 at 2172.942 kb on + strand, within OKGIIK_10065 at 2172.942 kb on + strand, within OKGIIK_10065 at 2172.942 kb on + strand, within OKGIIK_10065 at 2172.942 kb on + strand, within OKGIIK_10065 at 2172.942 kb on + strand, within OKGIIK_10065 at 2172.942 kb on + strand, within OKGIIK_10065 at 2172.942 kb on + strand, within OKGIIK_10065 at 2172.942 kb on + strand, within OKGIIK_10065 at 2172.942 kb on + strand, within OKGIIK_10065 at 2172.943 kb on - strand, within OKGIIK_10065 at 2172.943 kb on - strand, within OKGIIK_10065 at 2172.943 kb on - strand, within OKGIIK_10065 at 2172.943 kb on - strand, within OKGIIK_10065 at 2172.943 kb on - strand, within OKGIIK_10065 at 2172.943 kb on - strand, within OKGIIK_10065 at 2172.943 kb on - strand, within OKGIIK_10065 at 2172.943 kb on - strand, within OKGIIK_10065 at 2172.943 kb on - strand, within OKGIIK_10065 at 2172.943 kb on - strand, within OKGIIK_10065 at 2172.943 kb on - strand, within OKGIIK_10065 at 2172.943 kb on - strand, within OKGIIK_10065 at 2172.943 kb on - strand, within OKGIIK_10065 at 2172.943 kb on - strand, within OKGIIK_10065 at 2172.943 kb on - strand, within OKGIIK_10065 at 2172.943 kb on - strand, within OKGIIK_10065 at 2172.943 kb on - strand, within OKGIIK_10065 at 2172.943 kb on - strand, within OKGIIK_10065 at 2172.943 kb on - strand, within OKGIIK_10065 at 2172.943 kb on - strand, within OKGIIK_10065 at 2172.943 kb on - strand, within OKGIIK_10065 at 2172.943 kb on - strand, within OKGIIK_10065 at 2172.943 kb on - strand, within OKGIIK_10065 at 2172.943 kb on - strand, within OKGIIK_10065 at 2172.943 kb on - strand, within OKGIIK_10065 at 2173.062 kb on + strand, within OKGIIK_10065 at 2173.062 kb on + strand, within OKGIIK_10065 at 2173.062 kb on + strand, within OKGIIK_10065 at 2173.062 kb on + strand, within OKGIIK_10065 at 2173.062 kb on + strand, within OKGIIK_10065 at 2173.062 kb on + strand, within OKGIIK_10065 at 2173.062 kb on + strand, within OKGIIK_10065 at 2173.062 kb on + strand, within OKGIIK_10065 at 2173.062 kb on + strand, within OKGIIK_10065 at 2173.062 kb on + strand, within OKGIIK_10065 at 2173.062 kb on + strand, within OKGIIK_10065 at 2173.062 kb on + strand, within OKGIIK_10065 at 2173.062 kb on + strand, within OKGIIK_10065 at 2173.062 kb on + strand, within OKGIIK_10065 at 2173.062 kb on + strand, within OKGIIK_10065 at 2173.062 kb on + strand, within OKGIIK_10065 at 2173.062 kb on + strand, within OKGIIK_10065 at 2173.062 kb on + strand, within OKGIIK_10065 at 2173.062 kb on + strand, within OKGIIK_10065 at 2173.062 kb on + strand, within OKGIIK_10065 at 2173.062 kb on + strand, within OKGIIK_10065 at 2173.062 kb on + strand, within OKGIIK_10065 at 2173.062 kb on + strand, within OKGIIK_10065 at 2173.062 kb on + strand, within OKGIIK_10065 at 2173.062 kb on + strand, within OKGIIK_10065 at 2173.062 kb on + strand, within OKGIIK_10065 at 2173.062 kb on + strand, within OKGIIK_10065 at 2173.062 kb on + strand, within OKGIIK_10065 at 2173.062 kb on + strand, within OKGIIK_10065 at 2173.062 kb on + strand, within OKGIIK_10065 at 2173.062 kb on + strand, within OKGIIK_10065 at 2173.062 kb on + strand, within OKGIIK_10065 at 2173.062 kb on + strand, within OKGIIK_10065 at 2173.062 kb on + strand, within OKGIIK_10065 at 2173.062 kb on + strand, within OKGIIK_10065 at 2173.062 kb on + strand, within OKGIIK_10065 at 2173.063 kb on - strand, within OKGIIK_10065 at 2173.063 kb on - strand, within OKGIIK_10065 at 2173.063 kb on - strand, within OKGIIK_10065 at 2173.063 kb on - strand, within OKGIIK_10065 at 2173.063 kb on - strand, within OKGIIK_10065 at 2173.063 kb on - strand, within OKGIIK_10065 at 2173.063 kb on - strand, within OKGIIK_10065 at 2173.063 kb on - strand, within OKGIIK_10065 at 2173.063 kb on - strand, within OKGIIK_10065 at 2173.063 kb on - strand, within OKGIIK_10065 at 2173.063 kb on - strand, within OKGIIK_10065 at 2173.063 kb on - strand, within OKGIIK_10065 at 2173.063 kb on - strand, within OKGIIK_10065 at 2173.063 kb on - strand, within OKGIIK_10065 at 2173.063 kb on - strand, within OKGIIK_10065 at 2173.063 kb on - strand, within OKGIIK_10065 at 2173.063 kb on - strand, within OKGIIK_10065 at 2173.063 kb on - strand, within OKGIIK_10065 at 2173.063 kb on - strand, within OKGIIK_10065 at 2173.063 kb on - strand, within OKGIIK_10065 at 2173.063 kb on - strand, within OKGIIK_10065 at 2173.063 kb on - strand, within OKGIIK_10065 at 2173.063 kb on - strand, within OKGIIK_10065 at 2173.063 kb on - strand, within OKGIIK_10065 at 2173.063 kb on - strand, within OKGIIK_10065 at 2173.063 kb on - strand, within OKGIIK_10065 at 2173.063 kb on - strand, within OKGIIK_10065 at 2173.063 kb on - strand, within OKGIIK_10065 at 2173.063 kb on - strand, within OKGIIK_10065 at 2173.063 kb on - strand, within OKGIIK_10065 at 2173.063 kb on - strand, within OKGIIK_10065 at 2173.086 kb on + strand, within OKGIIK_10065 at 2173.086 kb on + strand, within OKGIIK_10065 at 2173.087 kb on - strand, within OKGIIK_10065 at 2173.087 kb on - strand, within OKGIIK_10065 at 2173.098 kb on + strand, within OKGIIK_10065 at 2173.098 kb on + strand, within OKGIIK_10065 at 2173.099 kb on - strand, within OKGIIK_10065 at 2173.099 kb on - strand, within OKGIIK_10065 at 2173.099 kb on - strand, within OKGIIK_10065 at 2173.099 kb on - strand, within OKGIIK_10065 at 2173.182 kb on + strand at 2173.182 kb on + strand at 2173.182 kb on + strand at 2173.182 kb on + strand at 2173.182 kb on + strand at 2173.182 kb on + strand at 2173.182 kb on + strand at 2173.183 kb on - strand at 2173.183 kb on - strand at 2173.183 kb on - strand at 2173.183 kb on - strand at 2173.183 kb on - strand at 2173.183 kb on - strand at 2173.183 kb on - strand at 2173.183 kb on - strand at 2173.183 kb on - strand at 2173.183 kb on - strand at 2173.183 kb on - strand at 2173.183 kb on - strand at 2173.248 kb on + strand at 2173.249 kb on + strand at 2173.249 kb on + strand at 2173.249 kb on + strand at 2173.249 kb on + strand at 2173.249 kb on + strand at 2173.249 kb on + strand at 2173.250 kb on - strand at 2173.250 kb on - strand at 2173.250 kb on - strand at 2173.250 kb on - strand at 2173.250 kb on - strand at 2173.250 kb on - strand at 2173.250 kb on - strand at 2173.250 kb on - strand at 2173.250 kb on - strand at 2173.250 kb on - strand at 2173.250 kb on - strand at 2173.250 kb on - strand at 2173.250 kb on - strand at 2173.250 kb on - strand at 2173.250 kb on - strand at 2173.250 kb on - strand at 2173.283 kb on + strand at 2173.491 kb on - strand at 2173.491 kb on - strand at 2173.491 kb on - strand at 2173.491 kb on - strand at 2173.491 kb on - strand at 2173.491 kb on - strand at 2173.491 kb on - strand at 2173.491 kb on - strand at 2173.529 kb on + strand at 2173.529 kb on + strand at 2173.856 kb on - strand at 2173.856 kb on - strand at 2173.856 kb on - strand at 2173.874 kb on - strand at 2173.874 kb on - strand at 2173.874 kb on - strand at 2173.874 kb on - strand at 2173.874 kb on - strand at 2173.874 kb on - strand at 2173.874 kb on - strand at 2173.874 kb on - strand at 2173.874 kb on - strand at 2173.874 kb on - strand at 2173.874 kb on - strand at 2173.874 kb on - strand at 2173.874 kb on - strand at 2173.888 kb on - strand, within ihfA at 2173.888 kb on - strand, within ihfA at 2173.888 kb on - strand, within ihfA at 2173.888 kb on - strand, within ihfA at 2173.888 kb on - strand, within ihfA at 2173.888 kb on - strand, within ihfA at 2173.888 kb on - strand, within ihfA
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_PIPES with Aluminum chloride 0.140625 mM remove 2,172,867 + OKGIIK_10065 0.50 -0.8 2,172,867 + OKGIIK_10065 0.50 -2.0 2,172,868 - OKGIIK_10065 0.50 -0.4 2,172,868 - OKGIIK_10065 0.50 -1.4 2,172,868 - OKGIIK_10065 0.50 +0.3 2,172,942 + OKGIIK_10065 0.60 +0.6 2,172,942 + OKGIIK_10065 0.60 -1.0 2,172,942 + OKGIIK_10065 0.60 -0.3 2,172,942 + OKGIIK_10065 0.60 -1.0 2,172,942 + OKGIIK_10065 0.60 +1.3 2,172,942 + OKGIIK_10065 0.60 +1.3 2,172,942 + OKGIIK_10065 0.60 -1.2 2,172,942 + OKGIIK_10065 0.60 +1.2 2,172,942 + OKGIIK_10065 0.60 +0.3 2,172,942 + OKGIIK_10065 0.60 -2.0 2,172,942 + OKGIIK_10065 0.60 +2.2 2,172,942 + OKGIIK_10065 0.60 -2.1 2,172,942 + OKGIIK_10065 0.60 -2.9 2,172,942 + OKGIIK_10065 0.60 +0.4 2,172,942 + OKGIIK_10065 0.60 +0.1 2,172,942 + OKGIIK_10065 0.60 -2.6 2,172,942 + OKGIIK_10065 0.60 +0.2 2,172,942 + OKGIIK_10065 0.60 +1.6 2,172,942 + OKGIIK_10065 0.60 -0.9 2,172,942 + OKGIIK_10065 0.60 -0.4 2,172,942 + OKGIIK_10065 0.60 -0.4 2,172,942 + OKGIIK_10065 0.60 +0.6 2,172,942 + OKGIIK_10065 0.60 +0.8 2,172,942 + OKGIIK_10065 0.60 -0.2 2,172,943 - OKGIIK_10065 0.60 +0.8 2,172,943 - OKGIIK_10065 0.60 +0.3 2,172,943 - OKGIIK_10065 0.60 -2.5 2,172,943 - OKGIIK_10065 0.60 +2.2 2,172,943 - OKGIIK_10065 0.60 +1.6 2,172,943 - OKGIIK_10065 0.60 -0.7 2,172,943 - OKGIIK_10065 0.60 -0.4 2,172,943 - OKGIIK_10065 0.60 -1.7 2,172,943 - OKGIIK_10065 0.60 +0.6 2,172,943 - OKGIIK_10065 0.60 -0.7 2,172,943 - OKGIIK_10065 0.60 +1.6 2,172,943 - OKGIIK_10065 0.60 +1.6 2,172,943 - OKGIIK_10065 0.60 -1.0 2,172,943 - OKGIIK_10065 0.60 -1.7 2,172,943 - OKGIIK_10065 0.60 +0.6 2,172,943 - OKGIIK_10065 0.60 -1.2 2,172,943 - OKGIIK_10065 0.60 -0.8 2,172,943 - OKGIIK_10065 0.60 +0.2 2,172,943 - OKGIIK_10065 0.60 -2.0 2,172,943 - OKGIIK_10065 0.60 +3.2 2,172,943 - OKGIIK_10065 0.60 -1.1 2,172,943 - OKGIIK_10065 0.60 -2.4 2,172,943 - OKGIIK_10065 0.60 -1.4 2,172,943 - OKGIIK_10065 0.60 -1.0 2,172,943 - OKGIIK_10065 0.60 -0.4 2,173,062 + OKGIIK_10065 0.76 +0.0 2,173,062 + OKGIIK_10065 0.76 +0.4 2,173,062 + OKGIIK_10065 0.76 -2.3 2,173,062 + OKGIIK_10065 0.76 -1.0 2,173,062 + OKGIIK_10065 0.76 -1.7 2,173,062 + OKGIIK_10065 0.76 -1.4 2,173,062 + OKGIIK_10065 0.76 -0.4 2,173,062 + OKGIIK_10065 0.76 -0.2 2,173,062 + OKGIIK_10065 0.76 +0.4 2,173,062 + OKGIIK_10065 0.76 -1.6 2,173,062 + OKGIIK_10065 0.76 -2.4 2,173,062 + OKGIIK_10065 0.76 -0.5 2,173,062 + OKGIIK_10065 0.76 +0.0 2,173,062 + OKGIIK_10065 0.76 +3.2 2,173,062 + OKGIIK_10065 0.76 -1.9 2,173,062 + OKGIIK_10065 0.76 -1.7 2,173,062 + OKGIIK_10065 0.76 -1.5 2,173,062 + OKGIIK_10065 0.76 +0.2 2,173,062 + OKGIIK_10065 0.76 -2.3 2,173,062 + OKGIIK_10065 0.76 -1.1 2,173,062 + OKGIIK_10065 0.76 -0.0 2,173,062 + OKGIIK_10065 0.76 -1.0 2,173,062 + OKGIIK_10065 0.76 -1.7 2,173,062 + OKGIIK_10065 0.76 -1.6 2,173,062 + OKGIIK_10065 0.76 -1.2 2,173,062 + OKGIIK_10065 0.76 +1.4 2,173,062 + OKGIIK_10065 0.76 -0.5 2,173,062 + OKGIIK_10065 0.76 +0.2 2,173,062 + OKGIIK_10065 0.76 -1.6 2,173,062 + OKGIIK_10065 0.76 +0.6 2,173,062 + OKGIIK_10065 0.76 -0.3 2,173,062 + OKGIIK_10065 0.76 +1.2 2,173,062 + OKGIIK_10065 0.76 -1.0 2,173,062 + OKGIIK_10065 0.76 +2.2 2,173,062 + OKGIIK_10065 0.76 -2.1 2,173,062 + OKGIIK_10065 0.76 +1.6 2,173,063 - OKGIIK_10065 0.76 +1.1 2,173,063 - OKGIIK_10065 0.76 -0.7 2,173,063 - OKGIIK_10065 0.76 +0.3 2,173,063 - OKGIIK_10065 0.76 -0.4 2,173,063 - OKGIIK_10065 0.76 +0.2 2,173,063 - OKGIIK_10065 0.76 +1.1 2,173,063 - OKGIIK_10065 0.76 -1.0 2,173,063 - OKGIIK_10065 0.76 -0.2 2,173,063 - OKGIIK_10065 0.76 -1.6 2,173,063 - OKGIIK_10065 0.76 +1.2 2,173,063 - OKGIIK_10065 0.76 +0.0 2,173,063 - OKGIIK_10065 0.76 +0.0 2,173,063 - OKGIIK_10065 0.76 +0.5 2,173,063 - OKGIIK_10065 0.76 +0.4 2,173,063 - OKGIIK_10065 0.76 -0.1 2,173,063 - OKGIIK_10065 0.76 +3.2 2,173,063 - OKGIIK_10065 0.76 -1.0 2,173,063 - OKGIIK_10065 0.76 -1.4 2,173,063 - OKGIIK_10065 0.76 +1.1 2,173,063 - OKGIIK_10065 0.76 -1.6 2,173,063 - OKGIIK_10065 0.76 +0.0 2,173,063 - OKGIIK_10065 0.76 -0.2 2,173,063 - OKGIIK_10065 0.76 -0.6 2,173,063 - OKGIIK_10065 0.76 -0.7 2,173,063 - OKGIIK_10065 0.76 +0.0 2,173,063 - OKGIIK_10065 0.76 +1.6 2,173,063 - OKGIIK_10065 0.76 +0.4 2,173,063 - OKGIIK_10065 0.76 +1.2 2,173,063 - OKGIIK_10065 0.76 -0.4 2,173,063 - OKGIIK_10065 0.76 +0.6 2,173,063 - OKGIIK_10065 0.76 -0.5 2,173,086 + OKGIIK_10065 0.79 +0.0 2,173,086 + OKGIIK_10065 0.79 +0.0 2,173,087 - OKGIIK_10065 0.79 -0.4 2,173,087 - OKGIIK_10065 0.79 -1.3 2,173,098 + OKGIIK_10065 0.81 -1.0 2,173,098 + OKGIIK_10065 0.81 +0.8 2,173,099 - OKGIIK_10065 0.81 -0.4 2,173,099 - OKGIIK_10065 0.81 +0.0 2,173,099 - OKGIIK_10065 0.81 +1.6 2,173,099 - OKGIIK_10065 0.81 -0.4 2,173,182 + -0.2 2,173,182 + +0.6 2,173,182 + +0.0 2,173,182 + -1.2 2,173,182 + +1.6 2,173,182 + -1.9 2,173,182 + -1.0 2,173,183 - -0.4 2,173,183 - +1.4 2,173,183 - -0.4 2,173,183 - +1.2 2,173,183 - +0.6 2,173,183 - +2.2 2,173,183 - -0.6 2,173,183 - +0.7 2,173,183 - -0.5 2,173,183 - -2.2 2,173,183 - +1.0 2,173,183 - -1.1 2,173,248 + -1.0 2,173,249 + -1.6 2,173,249 + +0.7 2,173,249 + +2.8 2,173,249 + -1.9 2,173,249 + -0.4 2,173,249 + -1.7 2,173,250 - -1.2 2,173,250 - +0.2 2,173,250 - +0.1 2,173,250 - -0.3 2,173,250 - +0.9 2,173,250 - -1.7 2,173,250 - +1.3 2,173,250 - -1.7 2,173,250 - +0.0 2,173,250 - -2.5 2,173,250 - -0.6 2,173,250 - -0.3 2,173,250 - -0.6 2,173,250 - -0.8 2,173,250 - -1.2 2,173,250 - +0.8 2,173,283 + +0.6 2,173,491 - +0.1 2,173,491 - -0.4 2,173,491 - -1.6 2,173,491 - +1.6 2,173,491 - +0.6 2,173,491 - -0.9 2,173,491 - +1.2 2,173,491 - -1.0 2,173,529 + +0.0 2,173,529 + -1.9 2,173,856 - +0.9 2,173,856 - +1.0 2,173,856 - +0.0 2,173,874 - +3.6 2,173,874 - -1.9 2,173,874 - -0.5 2,173,874 - +1.6 2,173,874 - +0.6 2,173,874 - +0.4 2,173,874 - +1.1 2,173,874 - -1.4 2,173,874 - -1.7 2,173,874 - -0.3 2,173,874 - -0.7 2,173,874 - -0.4 2,173,874 - -0.2 2,173,888 - ihfA OKGIIK_10080 0.11 -1.4 2,173,888 - ihfA OKGIIK_10080 0.11 -0.7 2,173,888 - ihfA OKGIIK_10080 0.11 +0.0 2,173,888 - ihfA OKGIIK_10080 0.11 -0.4 2,173,888 - ihfA OKGIIK_10080 0.11 -1.2 2,173,888 - ihfA OKGIIK_10080 0.11 -1.4 2,173,888 - ihfA OKGIIK_10080 0.11 -0.4
Or see this region's nucleotide sequence