Strain Fitness in Pseudomonas sp. RS175 around PFR28_03553

Experiment: 4-Aminobutyric (C) 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_03552 and PFR28_03553 are separated by 335 nucleotidesPFR28_03553 and PFR28_03554 are separated by 219 nucleotides PFR28_03552: PFR28_03552 - hypothetical protein, at 4,099,534 to 4,100,928 _03552 PFR28_03553: PFR28_03553 - hypothetical protein, at 4,101,264 to 4,102,340 _03553 PFR28_03554: PFR28_03554 - Peroxide stress resistance protein YaaA, at 4,102,560 to 4,103,339 _03554 Position (kb) 4101 4102 4103Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4100.450 kb on + strand, within PFR28_03552at 4100.450 kb on + strand, within PFR28_03552at 4100.450 kb on + strand, within PFR28_03552at 4100.451 kb on - strand, within PFR28_03552at 4100.451 kb on - strand, within PFR28_03552at 4100.451 kb on - strand, within PFR28_03552at 4100.533 kb on - strand, within PFR28_03552at 4100.863 kb on + strandat 4100.863 kb on + strandat 4100.863 kb on + strandat 4100.863 kb on + strandat 4100.863 kb on + strandat 4100.863 kb on + strandat 4100.863 kb on + strandat 4100.863 kb on + strandat 4100.864 kb on - strandat 4100.864 kb on - strandat 4100.864 kb on - strandat 4100.864 kb on - strandat 4100.864 kb on - strandat 4100.864 kb on - strandat 4100.864 kb on - strandat 4100.878 kb on + strandat 4100.878 kb on + strandat 4100.878 kb on + strandat 4100.878 kb on + strandat 4100.878 kb on + strandat 4100.879 kb on - strandat 4100.879 kb on - strandat 4100.879 kb on - strandat 4100.882 kb on + strandat 4100.882 kb on + strandat 4100.882 kb on + strandat 4100.882 kb on + strandat 4100.883 kb on - strandat 4100.883 kb on - strandat 4100.883 kb on - strandat 4100.883 kb on - strandat 4100.883 kb on - strandat 4100.883 kb on - strandat 4100.883 kb on - strandat 4100.910 kb on + strandat 4100.910 kb on + strandat 4100.911 kb on - strandat 4100.911 kb on - strandat 4100.911 kb on - strandat 4100.929 kb on - strandat 4100.963 kb on + strandat 4100.963 kb on + strandat 4100.963 kb on + strandat 4100.963 kb on + strandat 4100.963 kb on + strandat 4100.963 kb on + strandat 4100.963 kb on + strandat 4100.964 kb on - strandat 4100.964 kb on - strandat 4100.964 kb on - strandat 4101.091 kb on - strandat 4101.091 kb on - strandat 4101.140 kb on + strandat 4101.556 kb on + strand, within PFR28_03553at 4101.556 kb on + strand, within PFR28_03553at 4101.556 kb on + strand, within PFR28_03553at 4101.556 kb on + strand, within PFR28_03553at 4101.557 kb on - strand, within PFR28_03553at 4101.557 kb on - strand, within PFR28_03553at 4101.557 kb on - strand, within PFR28_03553at 4101.625 kb on + strand, within PFR28_03553at 4101.626 kb on - strand, within PFR28_03553at 4101.626 kb on - strand, within PFR28_03553at 4101.626 kb on - strand, within PFR28_03553at 4101.676 kb on + strand, within PFR28_03553at 4101.676 kb on + strand, within PFR28_03553at 4101.676 kb on + strand, within PFR28_03553at 4101.676 kb on + strand, within PFR28_03553at 4101.775 kb on + strand, within PFR28_03553at 4101.775 kb on + strand, within PFR28_03553at 4101.874 kb on + strand, within PFR28_03553at 4101.874 kb on + strand, within PFR28_03553at 4101.946 kb on + strand, within PFR28_03553at 4101.988 kb on + strand, within PFR28_03553at 4101.989 kb on - strand, within PFR28_03553at 4101.989 kb on - strand, within PFR28_03553at 4101.989 kb on - strand, within PFR28_03553at 4101.989 kb on - strand, within PFR28_03553at 4102.057 kb on + strand, within PFR28_03553at 4102.057 kb on + strand, within PFR28_03553at 4102.058 kb on - strand, within PFR28_03553at 4102.102 kb on + strand, within PFR28_03553at 4102.102 kb on + strand, within PFR28_03553at 4102.103 kb on - strand, within PFR28_03553at 4102.103 kb on - strand, within PFR28_03553at 4102.103 kb on - strand, within PFR28_03553at 4102.426 kb on - strandat 4102.489 kb on + strandat 4102.489 kb on + strandat 4102.490 kb on - strandat 4102.490 kb on - strandat 4102.527 kb on + strandat 4102.596 kb on + strandat 4102.596 kb on + strandat 4102.596 kb on + strandat 4102.596 kb on + strandat 4102.597 kb on - strandat 4102.638 kb on + strand, within PFR28_03554at 4102.638 kb on + strand, within PFR28_03554at 4102.639 kb on - strand, within PFR28_03554at 4102.639 kb on - strand, within PFR28_03554at 4102.639 kb on - strand, within PFR28_03554at 4102.639 kb on - strand, within PFR28_03554at 4102.821 kb on + strand, within PFR28_03554at 4102.821 kb on + strand, within PFR28_03554at 4102.821 kb on + strand, within PFR28_03554at 4102.822 kb on - strand, within PFR28_03554at 4102.822 kb on - strand, within PFR28_03554at 4102.822 kb on - strand, within PFR28_03554at 4102.903 kb on - strand, within PFR28_03554at 4102.903 kb on - strand, within PFR28_03554at 4102.903 kb on - strand, within PFR28_03554at 4102.903 kb on - strand, within PFR28_03554at 4102.939 kb on - strand, within PFR28_03554at 4102.989 kb on + strand, within PFR28_03554at 4102.989 kb on + strand, within PFR28_03554at 4102.989 kb on + strand, within PFR28_03554at 4102.990 kb on - strand, within PFR28_03554at 4102.990 kb on - strand, within PFR28_03554at 4103.082 kb on + strand, within PFR28_03554at 4103.160 kb on + strand, within PFR28_03554at 4103.161 kb on - strand, within PFR28_03554at 4103.178 kb on + strand, within PFR28_03554at 4103.178 kb on + strand, within PFR28_03554at 4103.179 kb on - strand, within PFR28_03554at 4103.179 kb on - strand, within PFR28_03554at 4103.179 kb on - strand, within PFR28_03554

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Per-strain Table

Position Strand Gene LocusTag Fraction 4-Aminobutyric (C) 10 mM
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4,100,450 + PFR28_03552 0.66 +0.1
4,100,450 + PFR28_03552 0.66 +0.6
4,100,450 + PFR28_03552 0.66 -0.8
4,100,451 - PFR28_03552 0.66 -0.6
4,100,451 - PFR28_03552 0.66 +0.9
4,100,451 - PFR28_03552 0.66 -0.2
4,100,533 - PFR28_03552 0.72 -0.5
4,100,863 + -0.2
4,100,863 + -0.1
4,100,863 + +0.1
4,100,863 + +0.6
4,100,863 + +0.9
4,100,863 + -1.1
4,100,863 + +1.8
4,100,863 + +0.4
4,100,864 - +1.0
4,100,864 - -1.4
4,100,864 - -0.5
4,100,864 - -0.4
4,100,864 - -0.9
4,100,864 - -0.9
4,100,864 - +0.3
4,100,878 + +1.2
4,100,878 + -0.5
4,100,878 + +1.2
4,100,878 + +0.1
4,100,878 + +1.2
4,100,879 - -0.1
4,100,879 - +1.2
4,100,879 - +0.6
4,100,882 + -0.2
4,100,882 + +1.0
4,100,882 + +0.3
4,100,882 + +0.6
4,100,883 - +0.8
4,100,883 - +0.2
4,100,883 - +0.3
4,100,883 - +1.1
4,100,883 - +0.2
4,100,883 - -0.2
4,100,883 - -0.5
4,100,910 + -0.3
4,100,910 + +0.1
4,100,911 - +3.7
4,100,911 - -0.2
4,100,911 - -0.9
4,100,929 - +0.0
4,100,963 + -0.2
4,100,963 + +0.5
4,100,963 + +0.0
4,100,963 + -0.4
4,100,963 + -0.4
4,100,963 + +0.4
4,100,963 + +1.2
4,100,964 - +0.3
4,100,964 - -0.6
4,100,964 - +0.4
4,101,091 - +0.9
4,101,091 - +0.3
4,101,140 + +0.1
4,101,556 + PFR28_03553 0.27 -0.1
4,101,556 + PFR28_03553 0.27 +0.6
4,101,556 + PFR28_03553 0.27 -0.0
4,101,556 + PFR28_03553 0.27 +0.5
4,101,557 - PFR28_03553 0.27 +0.2
4,101,557 - PFR28_03553 0.27 -0.4
4,101,557 - PFR28_03553 0.27 +0.7
4,101,625 + PFR28_03553 0.34 +0.2
4,101,626 - PFR28_03553 0.34 -0.1
4,101,626 - PFR28_03553 0.34 +1.4
4,101,626 - PFR28_03553 0.34 +0.4
4,101,676 + PFR28_03553 0.38 -0.3
4,101,676 + PFR28_03553 0.38 -0.1
4,101,676 + PFR28_03553 0.38 -0.5
4,101,676 + PFR28_03553 0.38 -0.0
4,101,775 + PFR28_03553 0.47 -0.3
4,101,775 + PFR28_03553 0.47 -1.1
4,101,874 + PFR28_03553 0.57 +0.5
4,101,874 + PFR28_03553 0.57 +0.0
4,101,946 + PFR28_03553 0.63 +0.6
4,101,988 + PFR28_03553 0.67 -0.5
4,101,989 - PFR28_03553 0.67 +1.1
4,101,989 - PFR28_03553 0.67 +2.7
4,101,989 - PFR28_03553 0.67 +0.5
4,101,989 - PFR28_03553 0.67 -1.3
4,102,057 + PFR28_03553 0.74 -0.2
4,102,057 + PFR28_03553 0.74 +0.1
4,102,058 - PFR28_03553 0.74 +0.2
4,102,102 + PFR28_03553 0.78 -1.0
4,102,102 + PFR28_03553 0.78 -0.4
4,102,103 - PFR28_03553 0.78 +0.0
4,102,103 - PFR28_03553 0.78 -0.4
4,102,103 - PFR28_03553 0.78 -1.2
4,102,426 - +0.1
4,102,489 + +0.2
4,102,489 + +0.5
4,102,490 - +0.3
4,102,490 - +1.1
4,102,527 + +1.0
4,102,596 + +0.7
4,102,596 + +1.2
4,102,596 + -1.9
4,102,596 + -0.9
4,102,597 - +0.6
4,102,638 + PFR28_03554 0.10 -0.4
4,102,638 + PFR28_03554 0.10 +0.7
4,102,639 - PFR28_03554 0.10 -0.5
4,102,639 - PFR28_03554 0.10 +0.2
4,102,639 - PFR28_03554 0.10 -0.5
4,102,639 - PFR28_03554 0.10 +0.0
4,102,821 + PFR28_03554 0.33 -0.8
4,102,821 + PFR28_03554 0.33 -1.4
4,102,821 + PFR28_03554 0.33 -0.0
4,102,822 - PFR28_03554 0.34 +0.3
4,102,822 - PFR28_03554 0.34 -1.2
4,102,822 - PFR28_03554 0.34 -0.6
4,102,903 - PFR28_03554 0.44 +0.3
4,102,903 - PFR28_03554 0.44 +0.5
4,102,903 - PFR28_03554 0.44 -0.1
4,102,903 - PFR28_03554 0.44 -0.1
4,102,939 - PFR28_03554 0.49 -1.2
4,102,989 + PFR28_03554 0.55 +0.1
4,102,989 + PFR28_03554 0.55 -0.3
4,102,989 + PFR28_03554 0.55 +0.5
4,102,990 - PFR28_03554 0.55 -1.4
4,102,990 - PFR28_03554 0.55 -0.2
4,103,082 + PFR28_03554 0.67 -0.3
4,103,160 + PFR28_03554 0.77 +0.4
4,103,161 - PFR28_03554 0.77 -0.4
4,103,178 + PFR28_03554 0.79 +0.4
4,103,178 + PFR28_03554 0.79 -0.8
4,103,179 - PFR28_03554 0.79 +0.5
4,103,179 - PFR28_03554 0.79 -0.4
4,103,179 - PFR28_03554 0.79 +1.3

Or see this region's nucleotide sequence