Strain Fitness in Pseudomonas sp. RS175 around PFR28_04667

Experiment: L-Hydroxyproline (C) 10 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Hydroxyproline (C) 10 mM
5,325,869	+				+0.4
5,325,870	-				-0.0
5,325,873	+				-0.0
5,325,873	+				+0.9
5,325,873	+				+0.4
5,325,873	+				-1.1
5,325,873	+				+0.9
5,325,873	+				-2.4
5,325,873	+				-0.8
5,325,873	+				+0.3
5,325,873	+				-1.7
5,325,873	+				-1.8
5,325,873	+				-0.6
5,325,873	+				-0.9
5,325,873	+				-0.3
5,325,873	+				-1.2
5,325,873	+				-2.1
5,325,873	+				-2.0
5,325,874	-				-0.4
5,325,874	-				-1.2
5,325,874	-				-1.1
5,325,874	-				+0.4
5,325,874	-				-0.6
5,325,874	-				+0.6
5,325,874	-				-1.0
5,325,874	-				-0.0
5,325,874	-				+0.3
5,325,877	+				-1.3
5,325,877	+				-1.5
5,325,877	+				+0.0
5,325,877	+				-0.3
5,325,877	+				+1.6
5,325,877	+				-0.0
5,325,877	+				-0.4
5,325,878	-				-0.0
5,325,878	-				+0.3
5,325,878	-				-1.6
5,325,878	-				+0.4
5,325,878	-				-0.7
5,325,878	-				-0.6
5,325,878	-				-0.9
5,325,878	-				-0.4
5,325,911	-				-1.0
5,325,911	-				-1.9
5,325,999	-		PFR28_04665	0.24	-0.7
5,326,067	+		PFR28_04665	0.46	+0.6
5,326,067	+		PFR28_04665	0.46	-0.3
5,326,284	+		PFR28_04666	0.15	+0.4
5,326,284	+		PFR28_04666	0.15	-0.4
5,326,284	+		PFR28_04666	0.15	+0.4
5,326,284	+		PFR28_04666	0.15	-0.5
5,326,284	+		PFR28_04666	0.15	-1.2
5,326,284	+		PFR28_04666	0.15	+0.5
5,326,284	+		PFR28_04666	0.15	-0.3
5,326,285	-		PFR28_04666	0.15	+1.4
5,326,285	-		PFR28_04666	0.15	-0.2
5,326,285	-		PFR28_04666	0.15	+1.7
5,326,285	-		PFR28_04666	0.15	-0.4
5,326,285	-		PFR28_04666	0.15	-1.6
5,326,285	-		PFR28_04666	0.15	+2.3
5,326,320	+		PFR28_04666	0.28	+0.9
5,326,320	+		PFR28_04666	0.28	+0.1
5,326,321	-		PFR28_04666	0.29	+0.3
5,326,321	-		PFR28_04666	0.29	-0.7
5,326,321	-		PFR28_04666	0.29	-0.7
5,326,321	-		PFR28_04666	0.29	-0.4
5,326,407	+		PFR28_04666	0.61	-2.6
5,326,408	-		PFR28_04666	0.61	-0.3
5,326,408	-		PFR28_04666	0.61	-0.1
5,326,413	+		PFR28_04666	0.63	+0.1
5,326,413	+		PFR28_04666	0.63	-1.0
5,326,414	-		PFR28_04666	0.64	-2.2
5,326,414	-		PFR28_04666	0.64	+0.4
5,326,594	-				+0.1
5,326,594	-				+0.1
5,326,614	+				-0.1
5,326,614	+				-0.6
5,326,632	+				+0.3
5,326,632	+				-0.7
5,326,632	+				+0.4
5,326,633	-				+0.6
5,326,633	-				-0.7
5,326,633	-				+0.9
5,326,633	-				+0.2
5,326,636	+				-0.1
5,326,636	+				-2.6
5,326,636	+				-0.4
5,326,636	+				+0.5
5,326,636	+				-0.0
5,326,637	-				-0.7
5,326,637	-				+0.6
5,326,637	-				-0.0
5,326,637	-				+0.7
5,326,637	-				+0.4
5,326,665	+				-0.6
5,326,666	-				+1.0
5,326,666	-				-0.1
5,326,749	-				+0.5
5,326,749	-				+2.3
5,326,805	+				-0.5
5,326,805	+				+0.4
5,326,805	+				+0.6
5,326,805	+				+0.8
5,326,806	-				+0.1
5,326,806	-				-0.7
5,326,806	-				-0.5
5,326,806	-				+0.8
5,326,852	+				+0.6
5,326,852	+				+2.1
5,326,852	+				+1.1
5,326,852	+				+1.2
5,326,852	+				+0.9
5,326,853	-				-0.5
5,326,853	-				+0.1
5,326,853	-				-0.5
5,326,853	-				+0.2
5,326,853	-				-1.8
5,327,092	+		PFR28_04667	0.41	-0.7
5,327,154	+		PFR28_04667	0.50	-1.1
5,327,331	-		PFR28_04667	0.74	-1.6
5,327,455	+				-0.5
5,327,456	-				+0.4
5,327,456	-				+1.2
5,327,482	+				+0.8
5,327,482	+				+0.6
5,327,483	-				-2.0
5,327,483	-				+0.4
5,327,490	+				-0.0
5,327,491	-				+0.4
5,327,491	-				-1.4
5,327,491	-				-0.2
5,327,628	+				+0.4
5,327,628	+				-1.3
5,327,763	+		PFR28_04668	0.18	+0.1
5,327,763	+		PFR28_04668	0.18	-0.2
5,327,763	+		PFR28_04668	0.18	-1.4
5,327,763	+		PFR28_04668	0.18	-0.2
5,327,763	+		PFR28_04668	0.18	-0.1
5,327,763	+		PFR28_04668	0.18	-1.7
5,327,763	+		PFR28_04668	0.18	-1.4
5,327,763	+		PFR28_04668	0.18	+0.0
5,327,763	+		PFR28_04668	0.18	-1.5
5,327,764	-		PFR28_04668	0.18	-1.9
5,327,764	-		PFR28_04668	0.18	+0.3
5,327,764	-		PFR28_04668	0.18	-0.0
5,327,764	-		PFR28_04668	0.18	+0.8
5,327,764	-		PFR28_04668	0.18	+0.4
5,327,764	-		PFR28_04668	0.18	-0.3
5,327,764	-		PFR28_04668	0.18	+0.9
5,327,764	-		PFR28_04668	0.18	-0.9
5,327,764	-		PFR28_04668	0.18	+0.2
5,327,764	-		PFR28_04668	0.18	-0.2
5,327,764	-		PFR28_04668	0.18	-1.2
5,327,764	-		PFR28_04668	0.18	+0.8
5,327,769	+		PFR28_04668	0.19	+0.3
5,327,770	-		PFR28_04668	0.19	+0.7
5,327,770	-		PFR28_04668	0.19	-0.2
5,327,865	+		PFR28_04668	0.26	-0.2
5,327,865	+		PFR28_04668	0.26	+0.1
5,327,865	+		PFR28_04668	0.26	-0.3
5,327,865	+		PFR28_04668	0.26	+0.3
5,327,865	+		PFR28_04668	0.26	+0.5
5,327,865	+		PFR28_04668	0.26	-2.2
5,327,865	+		PFR28_04668	0.26	-0.1
5,327,866	-		PFR28_04668	0.26	+0.5
5,327,866	-		PFR28_04668	0.26	+0.1
5,327,866	-		PFR28_04668	0.26	-1.2
5,327,866	-		PFR28_04668	0.26	-0.3
5,327,866	-		PFR28_04668	0.26	-1.2
5,327,866	-		PFR28_04668	0.26	+0.6
5,327,866	-		PFR28_04668	0.26	+0.5
5,327,866	-		PFR28_04668	0.26	-0.0
5,327,866	-		PFR28_04668	0.26	+0.2
5,327,866	-		PFR28_04668	0.26	+0.9
5,327,866	-		PFR28_04668	0.26	-0.4
5,328,153	+		PFR28_04668	0.48	-0.2
5,328,153	+		PFR28_04668	0.48	+1.6
5,328,154	-		PFR28_04668	0.48	-0.0
5,328,258	-		PFR28_04668	0.56	-0.5
5,328,258	-		PFR28_04668	0.56	+1.1
5,328,363	+		PFR28_04668	0.64	-0.6
5,328,363	+		PFR28_04668	0.64	+2.6
5,328,445	-		PFR28_04668	0.70	-1.6
5,328,524	+		PFR28_04668	0.76	+1.0