Strain Fitness in Pseudomonas sp. RS175 around PFR28_00953

Experiment: L-Lysine (C) 10 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Lysine (C) 10 mM
1,036,849	+				-0.8
1,036,849	+				+1.4
1,036,850	-				+3.4
1,036,850	-				+1.0
1,036,850	-				-0.7
1,036,850	-				+0.5
1,036,854	+				-0.5
1,036,854	+				-1.1
1,036,854	+				-2.0
1,036,855	-				-0.8
1,036,855	-				-1.6
1,036,857	+				-0.3
1,036,857	+				-0.5
1,036,857	+				+1.2
1,036,857	+				-1.0
1,036,857	+				+2.6
1,036,857	+				+0.3
1,036,857	+				-2.8
1,036,857	+				+2.0
1,036,857	+				+0.5
1,036,857	+				+0.5
1,036,858	-				-0.3
1,036,858	-				-0.8
1,036,858	-				-3.1
1,036,858	-				-0.2
1,036,858	-				-1.5
1,036,858	-				+0.2
1,036,858	-				-0.6
1,036,858	-				+0.7
1,036,858	-				-0.9
1,036,858	-				+0.1
1,036,858	-				+0.1
1,036,858	-				+0.5
1,036,870	+				-1.5
1,036,870	+				+1.0
1,036,870	+				-0.7
1,036,870	+				+0.7
1,036,870	+				-0.4
1,036,871	-				+1.1
1,036,871	-				-2.0
1,036,871	-				-1.3
1,036,871	-				+1.2
1,036,871	-				+0.7
1,036,873	+				+0.1
1,036,873	+				+0.4
1,036,873	+				+1.0
1,036,874	-				-2.0
1,036,874	-				+0.3
1,036,874	-				+0.7
1,036,874	-				+0.2
1,036,874	-				-1.6
1,036,874	-				-1.3
1,037,043	-				-2.4
1,037,113	+		PFR28_00952	0.16	-0.9
1,037,113	+		PFR28_00952	0.16	-2.6
1,037,114	-		PFR28_00952	0.16	-0.1
1,037,114	-		PFR28_00952	0.16	-0.0
1,037,114	-		PFR28_00952	0.16	-2.0
1,037,114	-		PFR28_00952	0.16	-1.8
1,037,114	-		PFR28_00952	0.16	+0.2
1,037,170	-		PFR28_00952	0.29	-0.3
1,037,385	+		PFR28_00952	0.79	+0.2
1,037,563	-				-1.8
1,037,587	-				+0.0
1,037,587	-				+0.0
1,037,594	+				+0.8
1,037,594	+				+0.4
1,037,594	+				-2.6
1,037,594	+				+0.6
1,037,594	+				+0.4
1,037,594	+				+0.5
1,037,595	-				-2.3
1,037,595	-				+0.4
1,037,595	-				+1.1
1,037,595	-				-0.2
1,037,595	-				-0.1
1,037,658	-				-0.6
1,037,663	+				+0.3
1,037,663	+				+0.6
1,037,664	-				+1.8
1,037,763	+		PFR28_00953	0.11	-2.6
1,037,763	+		PFR28_00953	0.11	-1.3
1,037,763	+		PFR28_00953	0.11	-1.4
1,037,764	-		PFR28_00953	0.12	+2.6
1,037,764	-		PFR28_00953	0.12	+1.0
1,037,767	-		PFR28_00953	0.13	-1.6
1,037,787	+		PFR28_00953	0.19	-0.8
1,037,787	+		PFR28_00953	0.19	+0.6
1,037,787	+		PFR28_00953	0.19	-0.1
1,037,787	+		PFR28_00953	0.19	-1.6
1,037,788	-		PFR28_00953	0.19	+0.2
1,037,823	+		PFR28_00953	0.31	-0.0
1,037,823	+		PFR28_00953	0.31	-0.6
1,037,823	+		PFR28_00953	0.31	+0.1
1,037,823	+		PFR28_00953	0.31	-0.9
1,037,823	+		PFR28_00953	0.31	+0.8
1,037,824	-		PFR28_00953	0.31	-2.3
1,037,824	-		PFR28_00953	0.31	-0.4
1,037,824	-		PFR28_00953	0.31	-3.4
1,037,824	-		PFR28_00953	0.31	-1.2
1,037,837	-		PFR28_00953	0.35	+0.3
1,038,140	+		PFR28_00954	0.13	+0.0
1,038,140	+		PFR28_00954	0.13	+1.3
1,038,140	+		PFR28_00954	0.13	-0.0
1,038,140	+		PFR28_00954	0.13	-1.3
1,038,140	+		PFR28_00954	0.13	-2.9
1,038,140	+		PFR28_00954	0.13	+0.2
1,038,140	+		PFR28_00954	0.13	+2.0
1,038,140	+		PFR28_00954	0.13	+1.7
1,038,140	+		PFR28_00954	0.13	+1.8
1,038,140	+		PFR28_00954	0.13	+1.6
1,038,140	+		PFR28_00954	0.13	+0.1
1,038,140	+		PFR28_00954	0.13	-1.0
1,038,140	+		PFR28_00954	0.13	-0.4
1,038,140	+		PFR28_00954	0.13	+0.4
1,038,140	+		PFR28_00954	0.13	+0.2
1,038,140	+		PFR28_00954	0.13	-1.0
1,038,140	+		PFR28_00954	0.13	-1.0
1,038,140	+		PFR28_00954	0.13	-2.2
1,038,140	+		PFR28_00954	0.13	-2.6
1,038,140	+		PFR28_00954	0.13	-1.5
1,038,140	+		PFR28_00954	0.13	-0.5
1,038,140	+		PFR28_00954	0.13	+0.3
1,038,140	+		PFR28_00954	0.13	+2.4
1,038,140	+		PFR28_00954	0.13	-0.9
1,038,141	-		PFR28_00954	0.13	+0.1
1,038,141	-		PFR28_00954	0.13	-0.5
1,038,141	-		PFR28_00954	0.13	-1.2
1,038,141	-		PFR28_00954	0.13	+0.4
1,038,141	-		PFR28_00954	0.13	+3.8
1,038,141	-		PFR28_00954	0.13	-0.3
1,038,141	-		PFR28_00954	0.13	+0.2
1,038,141	-		PFR28_00954	0.13	+0.5
1,038,141	-		PFR28_00954	0.13	-3.1
1,038,141	-		PFR28_00954	0.13	-0.5
1,038,141	-		PFR28_00954	0.13	-0.5
1,038,141	-		PFR28_00954	0.13	+0.2
1,038,141	-		PFR28_00954	0.13	-0.4
1,038,141	-		PFR28_00954	0.13	-0.6
1,038,141	-		PFR28_00954	0.13	-2.2
1,038,141	-		PFR28_00954	0.13	+0.6
1,038,141	-		PFR28_00954	0.13	-2.0
1,038,141	-		PFR28_00954	0.13	+0.6
1,038,141	-		PFR28_00954	0.13	+0.3
1,038,141	-		PFR28_00954	0.13	+0.8
1,038,141	-		PFR28_00954	0.13	-2.1
1,038,141	-		PFR28_00954	0.13	-0.2
1,038,141	-		PFR28_00954	0.13	+0.7
1,038,142	+		PFR28_00954	0.13	-0.6
1,038,142	+		PFR28_00954	0.13	-0.8
1,038,142	+		PFR28_00954	0.13	-0.6
1,038,142	+		PFR28_00954	0.13	+0.4
1,038,142	+		PFR28_00954	0.13	+0.2
1,038,142	+		PFR28_00954	0.13	-0.1
1,038,142	+		PFR28_00954	0.13	-0.1
1,038,142	+		PFR28_00954	0.13	-0.2
1,038,142	+		PFR28_00954	0.13	-0.7
1,038,142	+		PFR28_00954	0.13	+0.3
1,038,142	+		PFR28_00954	0.13	+0.1
1,038,142	+		PFR28_00954	0.13	+0.8
1,038,142	+		PFR28_00954	0.13	+0.6
1,038,143	-		PFR28_00954	0.14	-1.5
1,038,143	-		PFR28_00954	0.14	-1.5
1,038,143	-		PFR28_00954	0.14	-1.3
1,038,143	-		PFR28_00954	0.14	+0.7
1,038,144	+		PFR28_00954	0.14	+1.7
1,038,144	+		PFR28_00954	0.14	+0.1
1,038,144	+		PFR28_00954	0.14	-1.5
1,038,144	+		PFR28_00954	0.14	-2.4
1,038,144	+		PFR28_00954	0.14	-1.3
1,038,144	+		PFR28_00954	0.14	+0.5
1,038,144	+		PFR28_00954	0.14	-0.1
1,038,144	+		PFR28_00954	0.14	+0.7
1,038,144	+		PFR28_00954	0.14	-2.0
1,038,144	+		PFR28_00954	0.14	+0.5
1,038,144	+		PFR28_00954	0.14	+0.1
1,038,144	+		PFR28_00954	0.14	-3.2
1,038,144	+		PFR28_00954	0.14	-1.0
1,038,144	+		PFR28_00954	0.14	+0.7
1,038,144	+		PFR28_00954	0.14	-0.8
1,038,144	+		PFR28_00954	0.14	+0.2
1,038,144	+		PFR28_00954	0.14	+0.6
1,038,144	+		PFR28_00954	0.14	+0.2
1,038,144	+		PFR28_00954	0.14	-1.0
1,038,144	+		PFR28_00954	0.14	+2.0
1,038,144	+		PFR28_00954	0.14	-0.1
1,038,144	+		PFR28_00954	0.14	-1.6
1,038,144	+		PFR28_00954	0.14	-0.2
1,038,144	+		PFR28_00954	0.14	-0.3
1,038,144	+		PFR28_00954	0.14	+1.2
1,038,145	-		PFR28_00954	0.14	+1.0
1,038,145	-		PFR28_00954	0.14	-1.2
1,038,145	-		PFR28_00954	0.14	-0.5
1,038,145	-		PFR28_00954	0.14	+0.7
1,038,145	-		PFR28_00954	0.14	-0.1
1,038,145	-		PFR28_00954	0.14	-3.1
1,038,145	-		PFR28_00954	0.14	+0.5
1,038,145	-		PFR28_00954	0.14	-1.3
1,038,145	-		PFR28_00954	0.14	+0.2
1,038,145	-		PFR28_00954	0.14	-0.9
1,038,145	-		PFR28_00954	0.14	+0.7
1,038,145	-		PFR28_00954	0.14	-0.1
1,038,205	+		PFR28_00954	0.20	-1.8
1,038,205	+		PFR28_00954	0.20	+1.2
1,038,205	+		PFR28_00954	0.20	+0.4
1,038,205	+		PFR28_00954	0.20	+0.3
1,038,206	-		PFR28_00954	0.21	-1.6
1,038,222	+		PFR28_00954	0.22	-0.1
1,038,222	+		PFR28_00954	0.22	+1.4
1,038,222	+		PFR28_00954	0.22	+1.6
1,038,222	+		PFR28_00954	0.22	-0.2
1,038,222	+		PFR28_00954	0.22	+0.6
1,038,222	+		PFR28_00954	0.22	-3.9
1,038,222	+		PFR28_00954	0.22	+1.5
1,038,222	+		PFR28_00954	0.22	-0.3
1,038,222	+		PFR28_00954	0.22	-0.3
1,038,222	+		PFR28_00954	0.22	+0.4
1,038,222	+		PFR28_00954	0.22	+0.9
1,038,222	+		PFR28_00954	0.22	-0.7
1,038,222	+		PFR28_00954	0.22	+0.9
1,038,223	-		PFR28_00954	0.23	-1.8
1,038,223	-		PFR28_00954	0.23	+2.1
1,038,223	-		PFR28_00954	0.23	-1.5
1,038,223	-		PFR28_00954	0.23	-1.6
1,038,223	-		PFR28_00954	0.23	-0.9
1,038,223	-		PFR28_00954	0.23	+1.4
1,038,223	-		PFR28_00954	0.23	-2.9
1,038,223	-		PFR28_00954	0.23	+1.4
1,038,223	-		PFR28_00954	0.23	+1.2
1,038,223	-		PFR28_00954	0.23	+0.7
1,038,223	-		PFR28_00954	0.23	+1.3
1,038,223	-		PFR28_00954	0.23	+1.0
1,038,237	-		PFR28_00954	0.24	+0.8
1,038,237	-		PFR28_00954	0.24	+0.1
1,038,237	-		PFR28_00954	0.24	-0.5
1,038,245	+		PFR28_00954	0.25	+0.0
1,038,246	-		PFR28_00954	0.25	-0.5
1,038,310	+		PFR28_00954	0.32	-1.2
1,038,354	+		PFR28_00954	0.37	-1.8
1,038,355	-		PFR28_00954	0.37	+0.1
1,038,378	+		PFR28_00954	0.40	-0.1
1,038,378	+		PFR28_00954	0.40	+0.4
1,038,378	+		PFR28_00954	0.40	+0.6
1,038,378	+		PFR28_00954	0.40	-0.5
1,038,379	-		PFR28_00954	0.40	+0.2
1,038,379	-		PFR28_00954	0.40	-1.9
1,038,379	-		PFR28_00954	0.40	-0.6
1,038,418	+		PFR28_00954	0.44	-2.2
1,038,419	-		PFR28_00954	0.45	+1.0
1,038,419	-		PFR28_00954	0.45	+1.5
1,038,419	-		PFR28_00954	0.45	-0.4
1,038,420	-		PFR28_00954	0.45	-0.2
1,038,475	+		PFR28_00954	0.51	-1.0
1,038,539	+		PFR28_00954	0.58	+1.3
1,038,540	-		PFR28_00954	0.58	-3.4
1,038,782	-		PFR28_00954	0.85	-0.9
1,038,832	+				-2.7
1,038,832	+				+1.6
1,038,832	+				+1.2
1,038,832	+				+2.6
1,038,832	+				+1.6
1,038,833	-				+1.4
1,038,833	-				-1.9
1,038,833	-				-1.2
1,038,833	-				-1.2
1,038,833	-				-4.3
1,038,833	-				-1.9
1,038,833	-				+0.6
1,038,833	-				+1.3
1,038,855	+				+0.9
1,038,855	+				-1.0
1,038,855	+				-1.2
1,038,855	+				-1.0
1,038,856	-				+0.8
1,038,857	+				-0.3
1,038,858	-				-0.2
1,038,873	+				+0.2
1,038,873	+				+0.2
1,038,873	+				-2.2
1,038,873	+				+0.9
1,038,873	+				-0.8
1,038,873	+				+2.0
1,038,873	+				-1.2
1,038,873	+				-0.8
1,038,873	+				+1.0
1,038,873	+				+1.8
1,038,873	+				+1.8
1,038,873	+				-2.2
1,038,873	+				-2.1
1,038,873	+				+0.5
1,038,873	+				-1.8
1,038,873	+				-1.8
1,038,873	+				-0.5
1,038,873	+				-1.6
1,038,874	-				-0.3
1,038,874	-				-0.7
1,038,874	-				-1.7
1,038,874	-				-0.8
1,038,874	-				-0.6
1,038,874	-				+0.7
1,038,874	-				-0.7
1,038,874	-				+1.8
1,038,874	-				-0.8
1,038,874	-				-3.3
1,038,874	-				-2.1
1,038,874	-				-2.6
1,038,914	+				-1.8
1,038,914	+				-2.5
1,038,914	+				-1.2
1,038,914	+				+0.6
1,038,915	-				-0.2
1,038,915	-				-1.4