Experiment: D-Glucose (C) 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFR28_05090 and PFR28_05091 are separated by 431 nucleotides PFR28_05091 and PFR28_05092 are separated by 168 nucleotides
PFR28_05090: PFR28_05090 - Outer membrane protein TolC, at 5,829,061 to 5,830,500
_05090
PFR28_05091: PFR28_05091 - Phosphomethylpyrimidine synthase, at 5,830,932 to 5,832,821
_05091
PFR28_05092: PFR28_05092 - hypothetical protein, at 5,832,990 to 5,834,282
_05092
Position (kb) 5830
5831
5832
5833 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5830.070 kb on + strand, within PFR28_05090 at 5830.070 kb on + strand, within PFR28_05090 at 5830.070 kb on + strand, within PFR28_05090 at 5830.071 kb on - strand, within PFR28_05090 at 5830.512 kb on + strand at 5830.513 kb on - strand at 5830.552 kb on + strand at 5830.552 kb on + strand at 5830.552 kb on + strand at 5830.552 kb on + strand at 5830.552 kb on + strand at 5830.552 kb on + strand at 5830.552 kb on + strand at 5830.553 kb on - strand at 5830.553 kb on - strand at 5830.553 kb on - strand at 5830.553 kb on - strand at 5830.553 kb on - strand at 5830.582 kb on + strand at 5830.582 kb on + strand at 5830.582 kb on + strand at 5830.582 kb on + strand at 5830.582 kb on + strand at 5830.582 kb on + strand at 5830.582 kb on + strand at 5830.582 kb on + strand at 5830.582 kb on + strand at 5830.582 kb on + strand at 5830.582 kb on + strand at 5830.582 kb on + strand at 5830.582 kb on + strand at 5830.582 kb on + strand at 5830.583 kb on - strand at 5830.583 kb on - strand at 5830.583 kb on - strand at 5830.583 kb on - strand at 5830.583 kb on - strand at 5830.583 kb on - strand at 5830.583 kb on - strand at 5830.583 kb on - strand at 5830.583 kb on - strand at 5830.583 kb on - strand at 5830.583 kb on - strand at 5830.584 kb on + strand at 5830.584 kb on + strand at 5830.585 kb on - strand at 5830.585 kb on - strand at 5830.585 kb on - strand at 5830.585 kb on - strand at 5830.585 kb on - strand at 5830.607 kb on + strand at 5830.608 kb on - strand at 5830.608 kb on - strand at 5830.608 kb on - strand at 5831.025 kb on + strand at 5831.025 kb on + strand at 5831.025 kb on + strand at 5831.130 kb on + strand, within PFR28_05091 at 5831.130 kb on + strand, within PFR28_05091 at 5831.130 kb on + strand, within PFR28_05091 at 5831.130 kb on + strand, within PFR28_05091 at 5831.131 kb on - strand, within PFR28_05091 at 5831.131 kb on - strand, within PFR28_05091 at 5831.131 kb on - strand, within PFR28_05091 at 5831.131 kb on - strand, within PFR28_05091 at 5831.131 kb on - strand, within PFR28_05091 at 5831.131 kb on - strand, within PFR28_05091 at 5831.149 kb on - strand, within PFR28_05091 at 5831.176 kb on + strand, within PFR28_05091 at 5831.176 kb on + strand, within PFR28_05091 at 5831.176 kb on + strand, within PFR28_05091 at 5831.176 kb on + strand, within PFR28_05091 at 5831.176 kb on + strand, within PFR28_05091 at 5831.176 kb on + strand, within PFR28_05091 at 5831.176 kb on + strand, within PFR28_05091 at 5831.177 kb on - strand, within PFR28_05091 at 5831.197 kb on + strand, within PFR28_05091 at 5831.197 kb on + strand, within PFR28_05091 at 5831.197 kb on + strand, within PFR28_05091 at 5831.197 kb on + strand, within PFR28_05091 at 5831.197 kb on + strand, within PFR28_05091 at 5831.197 kb on + strand, within PFR28_05091 at 5831.197 kb on + strand, within PFR28_05091 at 5831.197 kb on + strand, within PFR28_05091 at 5831.197 kb on + strand, within PFR28_05091 at 5831.198 kb on - strand, within PFR28_05091 at 5831.198 kb on - strand, within PFR28_05091 at 5831.198 kb on - strand, within PFR28_05091 at 5831.198 kb on - strand, within PFR28_05091 at 5831.198 kb on - strand, within PFR28_05091 at 5831.198 kb on - strand, within PFR28_05091 at 5831.364 kb on + strand, within PFR28_05091 at 5831.365 kb on - strand, within PFR28_05091 at 5831.400 kb on + strand, within PFR28_05091 at 5831.401 kb on - strand, within PFR28_05091 at 5831.401 kb on - strand, within PFR28_05091 at 5831.802 kb on + strand, within PFR28_05091 at 5831.803 kb on - strand, within PFR28_05091 at 5831.803 kb on - strand, within PFR28_05091 at 5831.898 kb on + strand, within PFR28_05091 at 5831.899 kb on - strand, within PFR28_05091 at 5831.899 kb on - strand, within PFR28_05091 at 5831.931 kb on + strand, within PFR28_05091 at 5831.931 kb on + strand, within PFR28_05091 at 5831.932 kb on - strand, within PFR28_05091 at 5831.932 kb on - strand, within PFR28_05091 at 5831.932 kb on - strand, within PFR28_05091 at 5831.932 kb on - strand, within PFR28_05091 at 5831.932 kb on - strand, within PFR28_05091 at 5831.932 kb on - strand, within PFR28_05091 at 5832.030 kb on + strand, within PFR28_05091 at 5832.030 kb on + strand, within PFR28_05091 at 5832.031 kb on - strand, within PFR28_05091 at 5832.031 kb on - strand, within PFR28_05091 at 5832.069 kb on + strand, within PFR28_05091 at 5832.069 kb on + strand, within PFR28_05091 at 5832.291 kb on + strand, within PFR28_05091 at 5832.291 kb on + strand, within PFR28_05091 at 5832.291 kb on + strand, within PFR28_05091 at 5832.291 kb on + strand, within PFR28_05091 at 5832.292 kb on - strand, within PFR28_05091 at 5832.292 kb on - strand, within PFR28_05091 at 5832.292 kb on - strand, within PFR28_05091 at 5832.292 kb on - strand, within PFR28_05091 at 5832.292 kb on - strand, within PFR28_05091 at 5832.396 kb on + strand, within PFR28_05091 at 5832.396 kb on + strand, within PFR28_05091 at 5832.396 kb on + strand, within PFR28_05091 at 5832.396 kb on + strand, within PFR28_05091 at 5832.396 kb on + strand, within PFR28_05091 at 5832.396 kb on + strand, within PFR28_05091 at 5832.396 kb on + strand, within PFR28_05091 at 5832.396 kb on + strand, within PFR28_05091 at 5832.396 kb on + strand, within PFR28_05091 at 5832.396 kb on + strand, within PFR28_05091 at 5832.396 kb on + strand, within PFR28_05091 at 5832.397 kb on - strand, within PFR28_05091 at 5832.397 kb on - strand, within PFR28_05091 at 5832.397 kb on - strand, within PFR28_05091 at 5832.397 kb on - strand, within PFR28_05091 at 5832.397 kb on - strand, within PFR28_05091 at 5832.397 kb on - strand, within PFR28_05091 at 5832.397 kb on - strand, within PFR28_05091 at 5832.397 kb on - strand, within PFR28_05091 at 5832.397 kb on - strand, within PFR28_05091 at 5832.462 kb on + strand, within PFR28_05091 at 5832.462 kb on + strand, within PFR28_05091 at 5832.462 kb on + strand, within PFR28_05091 at 5832.463 kb on - strand, within PFR28_05091 at 5832.463 kb on - strand, within PFR28_05091 at 5832.606 kb on + strand, within PFR28_05091 at 5832.711 kb on + strand at 5832.712 kb on - strand at 5832.808 kb on - strand at 5832.969 kb on + strand at 5832.969 kb on + strand at 5832.969 kb on + strand at 5832.969 kb on + strand at 5832.969 kb on + strand at 5832.969 kb on + strand at 5832.969 kb on + strand at 5832.969 kb on + strand at 5832.969 kb on + strand at 5832.969 kb on + strand at 5832.969 kb on + strand at 5832.969 kb on + strand at 5832.969 kb on + strand at 5832.969 kb on + strand at 5832.969 kb on + strand at 5832.970 kb on - strand at 5832.970 kb on - strand at 5832.970 kb on - strand at 5832.970 kb on - strand at 5832.970 kb on - strand at 5832.970 kb on - strand at 5832.970 kb on - strand at 5832.970 kb on - strand at 5832.970 kb on - strand at 5832.970 kb on - strand at 5832.970 kb on - strand at 5832.970 kb on - strand at 5832.982 kb on + strand at 5832.983 kb on - strand at 5833.011 kb on + strand at 5833.011 kb on + strand at 5833.011 kb on + strand at 5833.011 kb on + strand at 5833.011 kb on + strand at 5833.011 kb on + strand at 5833.011 kb on + strand at 5833.011 kb on + strand at 5833.195 kb on + strand, within PFR28_05092 at 5833.195 kb on + strand, within PFR28_05092 at 5833.669 kb on - strand, within PFR28_05092 at 5833.733 kb on + strand, within PFR28_05092 at 5833.734 kb on - strand, within PFR28_05092 at 5833.764 kb on + strand, within PFR28_05092 at 5833.764 kb on + strand, within PFR28_05092 at 5833.764 kb on + strand, within PFR28_05092 at 5833.764 kb on + strand, within PFR28_05092 at 5833.764 kb on + strand, within PFR28_05092 at 5833.807 kb on + strand, within PFR28_05092 at 5833.807 kb on + strand, within PFR28_05092 at 5833.807 kb on + strand, within PFR28_05092 at 5833.807 kb on + strand, within PFR28_05092
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C) 10 mM remove 5,830,070 + PFR28_05090 0.70 -0.2 5,830,070 + PFR28_05090 0.70 -1.0 5,830,070 + PFR28_05090 0.70 +0.0 5,830,071 - PFR28_05090 0.70 +0.0 5,830,512 + -0.4 5,830,513 - -0.6 5,830,552 + -1.4 5,830,552 + +0.4 5,830,552 + -0.9 5,830,552 + -1.0 5,830,552 + +0.3 5,830,552 + -0.7 5,830,552 + -0.2 5,830,553 - +0.1 5,830,553 - +0.0 5,830,553 - -0.4 5,830,553 - +0.3 5,830,553 - -0.7 5,830,582 + -1.6 5,830,582 + +0.9 5,830,582 + +1.8 5,830,582 + -1.0 5,830,582 + -0.1 5,830,582 + -0.8 5,830,582 + +0.3 5,830,582 + +1.1 5,830,582 + -0.5 5,830,582 + +0.1 5,830,582 + +0.7 5,830,582 + -1.3 5,830,582 + -0.1 5,830,582 + -0.4 5,830,583 - +0.2 5,830,583 - +0.0 5,830,583 - -0.4 5,830,583 - +0.9 5,830,583 - +0.9 5,830,583 - +0.3 5,830,583 - +0.0 5,830,583 - +0.8 5,830,583 - -1.0 5,830,583 - +0.2 5,830,583 - +0.2 5,830,584 + +0.1 5,830,584 + -0.6 5,830,585 - -0.1 5,830,585 - -0.2 5,830,585 - -0.5 5,830,585 - -0.8 5,830,585 - +0.4 5,830,607 + +0.3 5,830,608 - -0.7 5,830,608 - -0.3 5,830,608 - +0.3 5,831,025 + -0.8 5,831,025 + -0.4 5,831,025 + -1.3 5,831,130 + PFR28_05091 0.10 -1.4 5,831,130 + PFR28_05091 0.10 -1.6 5,831,130 + PFR28_05091 0.10 -1.5 5,831,130 + PFR28_05091 0.10 -1.1 5,831,131 - PFR28_05091 0.11 -2.5 5,831,131 - PFR28_05091 0.11 -1.4 5,831,131 - PFR28_05091 0.11 -2.5 5,831,131 - PFR28_05091 0.11 -1.1 5,831,131 - PFR28_05091 0.11 -1.5 5,831,131 - PFR28_05091 0.11 -0.4 5,831,149 - PFR28_05091 0.11 -1.7 5,831,176 + PFR28_05091 0.13 -0.3 5,831,176 + PFR28_05091 0.13 -1.3 5,831,176 + PFR28_05091 0.13 +1.0 5,831,176 + PFR28_05091 0.13 -1.6 5,831,176 + PFR28_05091 0.13 -2.1 5,831,176 + PFR28_05091 0.13 -1.9 5,831,176 + PFR28_05091 0.13 -1.1 5,831,177 - PFR28_05091 0.13 -0.9 5,831,197 + PFR28_05091 0.14 -0.9 5,831,197 + PFR28_05091 0.14 -0.9 5,831,197 + PFR28_05091 0.14 -3.1 5,831,197 + PFR28_05091 0.14 -1.7 5,831,197 + PFR28_05091 0.14 -1.4 5,831,197 + PFR28_05091 0.14 -2.0 5,831,197 + PFR28_05091 0.14 +0.7 5,831,197 + PFR28_05091 0.14 -1.6 5,831,197 + PFR28_05091 0.14 -1.0 5,831,198 - PFR28_05091 0.14 -1.5 5,831,198 - PFR28_05091 0.14 -1.3 5,831,198 - PFR28_05091 0.14 -1.2 5,831,198 - PFR28_05091 0.14 -1.5 5,831,198 - PFR28_05091 0.14 -1.6 5,831,198 - PFR28_05091 0.14 -1.2 5,831,364 + PFR28_05091 0.23 -0.7 5,831,365 - PFR28_05091 0.23 -1.8 5,831,400 + PFR28_05091 0.25 -2.9 5,831,401 - PFR28_05091 0.25 -1.9 5,831,401 - PFR28_05091 0.25 -1.1 5,831,802 + PFR28_05091 0.46 -1.4 5,831,803 - PFR28_05091 0.46 -1.4 5,831,803 - PFR28_05091 0.46 -1.8 5,831,898 + PFR28_05091 0.51 -0.5 5,831,899 - PFR28_05091 0.51 -1.9 5,831,899 - PFR28_05091 0.51 -1.4 5,831,931 + PFR28_05091 0.53 -1.7 5,831,931 + PFR28_05091 0.53 -1.6 5,831,932 - PFR28_05091 0.53 -1.6 5,831,932 - PFR28_05091 0.53 +0.4 5,831,932 - PFR28_05091 0.53 -1.0 5,831,932 - PFR28_05091 0.53 -0.7 5,831,932 - PFR28_05091 0.53 -1.0 5,831,932 - PFR28_05091 0.53 -2.7 5,832,030 + PFR28_05091 0.58 -0.7 5,832,030 + PFR28_05091 0.58 -0.3 5,832,031 - PFR28_05091 0.58 -2.8 5,832,031 - PFR28_05091 0.58 -0.9 5,832,069 + PFR28_05091 0.60 -2.6 5,832,069 + PFR28_05091 0.60 -1.7 5,832,291 + PFR28_05091 0.72 -2.1 5,832,291 + PFR28_05091 0.72 -3.1 5,832,291 + PFR28_05091 0.72 -1.2 5,832,291 + PFR28_05091 0.72 -1.6 5,832,292 - PFR28_05091 0.72 -1.0 5,832,292 - PFR28_05091 0.72 -1.8 5,832,292 - PFR28_05091 0.72 -1.8 5,832,292 - PFR28_05091 0.72 -1.2 5,832,292 - PFR28_05091 0.72 -2.1 5,832,396 + PFR28_05091 0.77 -0.8 5,832,396 + PFR28_05091 0.77 -1.0 5,832,396 + PFR28_05091 0.77 +0.1 5,832,396 + PFR28_05091 0.77 -1.0 5,832,396 + PFR28_05091 0.77 -0.9 5,832,396 + PFR28_05091 0.77 -0.8 5,832,396 + PFR28_05091 0.77 -2.6 5,832,396 + PFR28_05091 0.77 -1.6 5,832,396 + PFR28_05091 0.77 -0.7 5,832,396 + PFR28_05091 0.77 -0.4 5,832,396 + PFR28_05091 0.77 -1.1 5,832,397 - PFR28_05091 0.78 +0.7 5,832,397 - PFR28_05091 0.78 -1.1 5,832,397 - PFR28_05091 0.78 -0.1 5,832,397 - PFR28_05091 0.78 -0.9 5,832,397 - PFR28_05091 0.78 -3.3 5,832,397 - PFR28_05091 0.78 -0.7 5,832,397 - PFR28_05091 0.78 -1.4 5,832,397 - PFR28_05091 0.78 -1.6 5,832,397 - PFR28_05091 0.78 -2.1 5,832,462 + PFR28_05091 0.81 -1.2 5,832,462 + PFR28_05091 0.81 -3.0 5,832,462 + PFR28_05091 0.81 -1.9 5,832,463 - PFR28_05091 0.81 -1.0 5,832,463 - PFR28_05091 0.81 +0.3 5,832,606 + PFR28_05091 0.89 +0.0 5,832,711 + +0.7 5,832,712 - -0.4 5,832,808 - -0.1 5,832,969 + +0.7 5,832,969 + -0.7 5,832,969 + -0.4 5,832,969 + +0.1 5,832,969 + +0.1 5,832,969 + +0.2 5,832,969 + +0.2 5,832,969 + +1.1 5,832,969 + -0.3 5,832,969 + -0.4 5,832,969 + +1.1 5,832,969 + +0.4 5,832,969 + -0.5 5,832,969 + -0.9 5,832,969 + -0.3 5,832,970 - -0.0 5,832,970 - +1.3 5,832,970 - -0.3 5,832,970 - +1.8 5,832,970 - -0.2 5,832,970 - -0.1 5,832,970 - -0.2 5,832,970 - +0.8 5,832,970 - -0.1 5,832,970 - -0.0 5,832,970 - +0.2 5,832,970 - +0.4 5,832,982 + -0.2 5,832,983 - +0.0 5,833,011 + -1.3 5,833,011 + -1.1 5,833,011 + -0.1 5,833,011 + +0.4 5,833,011 + +0.2 5,833,011 + -0.1 5,833,011 + -0.1 5,833,011 + -0.2 5,833,195 + PFR28_05092 0.16 +0.3 5,833,195 + PFR28_05092 0.16 -0.0 5,833,669 - PFR28_05092 0.53 -0.1 5,833,733 + PFR28_05092 0.57 +0.8 5,833,734 - PFR28_05092 0.58 +0.9 5,833,764 + PFR28_05092 0.60 -0.1 5,833,764 + PFR28_05092 0.60 +1.3 5,833,764 + PFR28_05092 0.60 +1.0 5,833,764 + PFR28_05092 0.60 +0.5 5,833,764 + PFR28_05092 0.60 +2.3 5,833,807 + PFR28_05092 0.63 -0.1 5,833,807 + PFR28_05092 0.63 -0.3 5,833,807 + PFR28_05092 0.63 -0.2 5,833,807 + PFR28_05092 0.63 +1.1
Or see this region's nucleotide sequence