Experiment: D-Glucose (C) 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFR28_05065 and PFR28_05066 overlap by 4 nucleotides PFR28_05066 and PFR28_05067 overlap by 1 nucleotides PFR28_05067 and PFR28_05068 overlap by 4 nucleotides PFR28_05068 and PFR28_05069 overlap by 1 nucleotides
PFR28_05065: PFR28_05065 - Lipopolysaccharide core biosynthesis protein RfaG, at 5,801,991 to 5,803,115
_05065
PFR28_05066: PFR28_05066 - Lipopolysaccharide core heptose(I) kinase RfaP, at 5,803,112 to 5,803,918
_05066
PFR28_05067: PFR28_05067 - hypothetical protein, at 5,803,918 to 5,804,652
_05067
PFR28_05068: PFR28_05068 - hypothetical protein, at 5,804,649 to 5,805,401
_05068
PFR28_05069: PFR28_05069 - hypothetical protein, at 5,805,401 to 5,806,855
_05069
Position (kb) 5803
5804
5805 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5803.891 kb on + strand at 5803.891 kb on + strand at 5804.062 kb on + strand, within PFR28_05067 at 5804.062 kb on + strand, within PFR28_05067 at 5804.062 kb on + strand, within PFR28_05067 at 5804.062 kb on + strand, within PFR28_05067 at 5804.062 kb on + strand, within PFR28_05067 at 5804.065 kb on + strand, within PFR28_05067 at 5804.065 kb on + strand, within PFR28_05067 at 5804.077 kb on + strand, within PFR28_05067 at 5804.530 kb on + strand, within PFR28_05067 at 5804.624 kb on + strand at 5804.624 kb on + strand at 5804.624 kb on + strand at 5804.624 kb on + strand at 5804.756 kb on + strand, within PFR28_05068 at 5804.756 kb on + strand, within PFR28_05068 at 5804.756 kb on + strand, within PFR28_05068 at 5804.811 kb on + strand, within PFR28_05068 at 5804.811 kb on + strand, within PFR28_05068 at 5804.811 kb on + strand, within PFR28_05068 at 5804.814 kb on + strand, within PFR28_05068 at 5804.814 kb on + strand, within PFR28_05068 at 5804.814 kb on + strand, within PFR28_05068 at 5804.835 kb on + strand, within PFR28_05068 at 5805.138 kb on + strand, within PFR28_05068 at 5805.304 kb on + strand, within PFR28_05068 at 5805.304 kb on + strand, within PFR28_05068 at 5805.304 kb on + strand, within PFR28_05068 at 5805.304 kb on + strand, within PFR28_05068 at 5805.304 kb on + strand, within PFR28_05068 at 5805.305 kb on - strand, within PFR28_05068 at 5805.305 kb on - strand, within PFR28_05068 at 5805.315 kb on + strand, within PFR28_05068
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C) 10 mM remove 5,803,891 + -0.8 5,803,891 + +0.6 5,804,062 + PFR28_05067 0.20 +0.3 5,804,062 + PFR28_05067 0.20 -1.7 5,804,062 + PFR28_05067 0.20 -1.9 5,804,062 + PFR28_05067 0.20 +0.3 5,804,062 + PFR28_05067 0.20 -0.3 5,804,065 + PFR28_05067 0.20 +0.4 5,804,065 + PFR28_05067 0.20 +0.3 5,804,077 + PFR28_05067 0.22 -0.7 5,804,530 + PFR28_05067 0.83 -1.3 5,804,624 + +0.3 5,804,624 + +1.3 5,804,624 + -0.3 5,804,624 + +0.3 5,804,756 + PFR28_05068 0.14 -0.3 5,804,756 + PFR28_05068 0.14 -1.9 5,804,756 + PFR28_05068 0.14 +0.1 5,804,811 + PFR28_05068 0.22 -0.3 5,804,811 + PFR28_05068 0.22 +2.3 5,804,811 + PFR28_05068 0.22 +2.3 5,804,814 + PFR28_05068 0.22 +1.9 5,804,814 + PFR28_05068 0.22 -0.7 5,804,814 + PFR28_05068 0.22 +0.7 5,804,835 + PFR28_05068 0.25 +0.1 5,805,138 + PFR28_05068 0.65 +0.7 5,805,304 + PFR28_05068 0.87 +1.3 5,805,304 + PFR28_05068 0.87 +1.0 5,805,304 + PFR28_05068 0.87 +2.0 5,805,304 + PFR28_05068 0.87 +2.1 5,805,304 + PFR28_05068 0.87 +0.9 5,805,305 - PFR28_05068 0.87 -0.7 5,805,305 - PFR28_05068 0.87 +2.3 5,805,315 + PFR28_05068 0.88 -0.3
Or see this region's nucleotide sequence