Strain Fitness in Pseudomonas sp. RS175 around PFR28_04945

Experiment: D-Glucose (C) 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_04944 and PFR28_04945 overlap by 4 nucleotidesPFR28_04945 and PFR28_04946 are separated by 231 nucleotidesPFR28_04946 and PFR28_04947 overlap by 4 nucleotides PFR28_04944: PFR28_04944 - DNA-binding transcriptional regulator NtrC, at 5,634,950 to 5,636,386 _04944 PFR28_04945: PFR28_04945 - Sensory histidine kinase/phosphatase NtrB, at 5,636,383 to 5,637,468 _04945 PFR28_04946: PFR28_04946 - hypothetical protein, at 5,637,700 to 5,638,320 _04946 PFR28_04947: PFR28_04947 - hypothetical protein, at 5,638,317 to 5,638,835 _04947 Position (kb) 5636 5637 5638Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 5635.582 kb on + strand, within PFR28_04944at 5635.583 kb on - strand, within PFR28_04944at 5635.583 kb on - strand, within PFR28_04944at 5635.992 kb on - strand, within PFR28_04944at 5635.992 kb on - strand, within PFR28_04944at 5636.083 kb on - strand, within PFR28_04944at 5636.104 kb on - strand, within PFR28_04944at 5636.341 kb on + strandat 5636.789 kb on + strand, within PFR28_04945at 5636.790 kb on - strand, within PFR28_04945at 5636.960 kb on + strand, within PFR28_04945at 5636.960 kb on + strand, within PFR28_04945at 5636.960 kb on + strand, within PFR28_04945at 5636.960 kb on + strand, within PFR28_04945at 5636.960 kb on + strand, within PFR28_04945at 5636.961 kb on - strand, within PFR28_04945at 5636.961 kb on - strand, within PFR28_04945at 5636.961 kb on - strand, within PFR28_04945at 5637.112 kb on - strand, within PFR28_04945at 5637.380 kb on + strandat 5637.380 kb on + strandat 5637.380 kb on + strandat 5637.380 kb on + strandat 5637.380 kb on + strandat 5637.380 kb on + strandat 5637.380 kb on + strandat 5637.381 kb on - strandat 5637.381 kb on - strandat 5637.381 kb on - strandat 5637.381 kb on - strandat 5637.381 kb on - strandat 5637.381 kb on - strandat 5637.381 kb on - strandat 5637.381 kb on - strandat 5637.381 kb on - strandat 5637.436 kb on + strandat 5637.448 kb on + strandat 5637.448 kb on + strandat 5637.448 kb on + strandat 5637.449 kb on - strandat 5637.449 kb on - strandat 5637.449 kb on - strandat 5637.488 kb on + strandat 5637.488 kb on + strandat 5637.488 kb on + strandat 5637.561 kb on + strandat 5637.666 kb on - strandat 5637.676 kb on + strandat 5637.677 kb on - strandat 5637.677 kb on - strandat 5637.678 kb on + strandat 5637.678 kb on + strandat 5637.678 kb on + strandat 5637.679 kb on - strandat 5637.770 kb on + strand, within PFR28_04946at 5637.770 kb on + strand, within PFR28_04946at 5637.770 kb on + strand, within PFR28_04946at 5637.828 kb on + strand, within PFR28_04946at 5637.828 kb on + strand, within PFR28_04946at 5637.828 kb on + strand, within PFR28_04946at 5637.828 kb on + strand, within PFR28_04946at 5637.861 kb on + strand, within PFR28_04946at 5637.862 kb on - strand, within PFR28_04946at 5637.862 kb on - strand, within PFR28_04946at 5638.017 kb on + strand, within PFR28_04946at 5638.017 kb on + strand, within PFR28_04946at 5638.017 kb on + strand, within PFR28_04946at 5638.018 kb on - strand, within PFR28_04946at 5638.078 kb on + strand, within PFR28_04946at 5638.079 kb on - strand, within PFR28_04946at 5638.079 kb on - strand, within PFR28_04946at 5638.095 kb on - strand, within PFR28_04946at 5638.095 kb on - strand, within PFR28_04946at 5638.250 kb on + strand, within PFR28_04946at 5638.250 kb on + strand, within PFR28_04946at 5638.250 kb on + strand, within PFR28_04946at 5638.250 kb on + strand, within PFR28_04946at 5638.250 kb on + strand, within PFR28_04946at 5638.250 kb on + strand, within PFR28_04946at 5638.250 kb on + strand, within PFR28_04946at 5638.250 kb on + strand, within PFR28_04946at 5638.250 kb on + strand, within PFR28_04946at 5638.250 kb on + strand, within PFR28_04946at 5638.250 kb on + strand, within PFR28_04946at 5638.250 kb on + strand, within PFR28_04946at 5638.250 kb on + strand, within PFR28_04946at 5638.250 kb on + strand, within PFR28_04946at 5638.250 kb on + strand, within PFR28_04946at 5638.250 kb on + strand, within PFR28_04946at 5638.250 kb on + strand, within PFR28_04946at 5638.250 kb on + strand, within PFR28_04946at 5638.250 kb on + strand, within PFR28_04946at 5638.251 kb on - strand, within PFR28_04946at 5638.251 kb on - strand, within PFR28_04946at 5638.251 kb on - strand, within PFR28_04946at 5638.251 kb on - strand, within PFR28_04946at 5638.251 kb on - strand, within PFR28_04946at 5638.251 kb on - strand, within PFR28_04946at 5638.251 kb on - strand, within PFR28_04946at 5638.251 kb on - strand, within PFR28_04946at 5638.251 kb on - strand, within PFR28_04946at 5638.251 kb on - strand, within PFR28_04946at 5638.251 kb on - strand, within PFR28_04946at 5638.251 kb on - strand, within PFR28_04946at 5638.251 kb on - strand, within PFR28_04946at 5638.251 kb on - strand, within PFR28_04946at 5638.251 kb on - strand, within PFR28_04946at 5638.251 kb on - strand, within PFR28_04946at 5638.256 kb on + strand, within PFR28_04946at 5638.256 kb on + strand, within PFR28_04946at 5638.256 kb on + strand, within PFR28_04946at 5638.257 kb on - strand, within PFR28_04946at 5638.257 kb on - strand, within PFR28_04946at 5638.257 kb on - strand, within PFR28_04946at 5638.257 kb on - strand, within PFR28_04946at 5638.257 kb on - strand, within PFR28_04946at 5638.257 kb on - strand, within PFR28_04946at 5638.257 kb on - strand, within PFR28_04946at 5638.257 kb on - strand, within PFR28_04946at 5638.257 kb on - strand, within PFR28_04946at 5638.257 kb on - strand, within PFR28_04946at 5638.257 kb on - strand, within PFR28_04946at 5638.257 kb on - strand, within PFR28_04946at 5638.338 kb on + strandat 5638.339 kb on - strandat 5638.339 kb on - strandat 5638.424 kb on + strand, within PFR28_04947at 5638.424 kb on + strand, within PFR28_04947at 5638.446 kb on + strand, within PFR28_04947

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C) 10 mM
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5,635,582 + PFR28_04944 0.44 -2.9
5,635,583 - PFR28_04944 0.44 -1.3
5,635,583 - PFR28_04944 0.44 -2.5
5,635,992 - PFR28_04944 0.73 +1.3
5,635,992 - PFR28_04944 0.73 -1.3
5,636,083 - PFR28_04944 0.79 -0.4
5,636,104 - PFR28_04944 0.80 -0.7
5,636,341 + -3.2
5,636,789 + PFR28_04945 0.37 -2.2
5,636,790 - PFR28_04945 0.37 -0.3
5,636,960 + PFR28_04945 0.53 -1.5
5,636,960 + PFR28_04945 0.53 -1.6
5,636,960 + PFR28_04945 0.53 -0.9
5,636,960 + PFR28_04945 0.53 -0.3
5,636,960 + PFR28_04945 0.53 -1.2
5,636,961 - PFR28_04945 0.53 -2.2
5,636,961 - PFR28_04945 0.53 -0.4
5,636,961 - PFR28_04945 0.53 -0.8
5,637,112 - PFR28_04945 0.67 +0.9
5,637,380 + -1.6
5,637,380 + -1.0
5,637,380 + -2.0
5,637,380 + -1.6
5,637,380 + -1.2
5,637,380 + -0.2
5,637,380 + -2.1
5,637,381 - -0.4
5,637,381 - -0.5
5,637,381 - +0.2
5,637,381 - +0.3
5,637,381 - -1.7
5,637,381 - +0.4
5,637,381 - +0.3
5,637,381 - +0.9
5,637,381 - -0.5
5,637,436 + -0.9
5,637,448 + +0.7
5,637,448 + -0.8
5,637,448 + -0.8
5,637,449 - +1.5
5,637,449 - +0.6
5,637,449 - -0.4
5,637,488 + +3.3
5,637,488 + -0.9
5,637,488 + -0.3
5,637,561 + +1.8
5,637,666 - -2.0
5,637,676 + +0.0
5,637,677 - -1.1
5,637,677 - -1.8
5,637,678 + -1.3
5,637,678 + +0.8
5,637,678 + -0.3
5,637,679 - -0.9
5,637,770 + PFR28_04946 0.11 -0.1
5,637,770 + PFR28_04946 0.11 -0.5
5,637,770 + PFR28_04946 0.11 +0.1
5,637,828 + PFR28_04946 0.21 -1.0
5,637,828 + PFR28_04946 0.21 -0.8
5,637,828 + PFR28_04946 0.21 +0.5
5,637,828 + PFR28_04946 0.21 -0.7
5,637,861 + PFR28_04946 0.26 +0.3
5,637,862 - PFR28_04946 0.26 -0.3
5,637,862 - PFR28_04946 0.26 -0.1
5,638,017 + PFR28_04946 0.51 -0.2
5,638,017 + PFR28_04946 0.51 -0.3
5,638,017 + PFR28_04946 0.51 -0.9
5,638,018 - PFR28_04946 0.51 -0.6
5,638,078 + PFR28_04946 0.61 +0.6
5,638,079 - PFR28_04946 0.61 -0.5
5,638,079 - PFR28_04946 0.61 -0.0
5,638,095 - PFR28_04946 0.64 -0.4
5,638,095 - PFR28_04946 0.64 -1.1
5,638,250 + PFR28_04946 0.89 +0.2
5,638,250 + PFR28_04946 0.89 -0.3
5,638,250 + PFR28_04946 0.89 -1.2
5,638,250 + PFR28_04946 0.89 -0.2
5,638,250 + PFR28_04946 0.89 -0.6
5,638,250 + PFR28_04946 0.89 -0.3
5,638,250 + PFR28_04946 0.89 -0.4
5,638,250 + PFR28_04946 0.89 +0.2
5,638,250 + PFR28_04946 0.89 +0.4
5,638,250 + PFR28_04946 0.89 -0.1
5,638,250 + PFR28_04946 0.89 +0.9
5,638,250 + PFR28_04946 0.89 +0.5
5,638,250 + PFR28_04946 0.89 +0.6
5,638,250 + PFR28_04946 0.89 -0.6
5,638,250 + PFR28_04946 0.89 -0.5
5,638,250 + PFR28_04946 0.89 -1.4
5,638,250 + PFR28_04946 0.89 +1.5
5,638,250 + PFR28_04946 0.89 -0.6
5,638,250 + PFR28_04946 0.89 -0.2
5,638,251 - PFR28_04946 0.89 +0.4
5,638,251 - PFR28_04946 0.89 +0.7
5,638,251 - PFR28_04946 0.89 -0.1
5,638,251 - PFR28_04946 0.89 +0.6
5,638,251 - PFR28_04946 0.89 +0.6
5,638,251 - PFR28_04946 0.89 +0.3
5,638,251 - PFR28_04946 0.89 -0.5
5,638,251 - PFR28_04946 0.89 +0.7
5,638,251 - PFR28_04946 0.89 -1.3
5,638,251 - PFR28_04946 0.89 +0.5
5,638,251 - PFR28_04946 0.89 -0.6
5,638,251 - PFR28_04946 0.89 +0.4
5,638,251 - PFR28_04946 0.89 +0.9
5,638,251 - PFR28_04946 0.89 +0.3
5,638,251 - PFR28_04946 0.89 +0.3
5,638,251 - PFR28_04946 0.89 +1.5
5,638,256 + PFR28_04946 0.90 -0.0
5,638,256 + PFR28_04946 0.90 -0.5
5,638,256 + PFR28_04946 0.90 +0.5
5,638,257 - PFR28_04946 0.90 -0.3
5,638,257 - PFR28_04946 0.90 -0.6
5,638,257 - PFR28_04946 0.90 +0.5
5,638,257 - PFR28_04946 0.90 -1.0
5,638,257 - PFR28_04946 0.90 +0.3
5,638,257 - PFR28_04946 0.90 -0.4
5,638,257 - PFR28_04946 0.90 +0.7
5,638,257 - PFR28_04946 0.90 +0.2
5,638,257 - PFR28_04946 0.90 -0.3
5,638,257 - PFR28_04946 0.90 +0.2
5,638,257 - PFR28_04946 0.90 -0.1
5,638,257 - PFR28_04946 0.90 +0.5
5,638,338 + +0.2
5,638,339 - +0.9
5,638,339 - +1.4
5,638,424 + PFR28_04947 0.21 +1.3
5,638,424 + PFR28_04947 0.21 -0.5
5,638,446 + PFR28_04947 0.25 +0.6

Or see this region's nucleotide sequence