Strain Fitness in Pseudomonas sp. RS175 around PFR28_04929

Experiment: D-Glucose (C) 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_04928 and PFR28_04929 are separated by 290 nucleotidesPFR28_04929 and PFR28_04930 overlap by 1 nucleotidesPFR28_04930 and PFR28_04931 overlap by 1 nucleotidesPFR28_04931 and PFR28_04932 are separated by 42 nucleotides PFR28_04928: PFR28_04928 - hypothetical protein, at 5,621,048 to 5,622,709 _04928 PFR28_04929: PFR28_04929 - Histidine biosynthesis bifunctional protein HisB, at 5,623,000 to 5,623,593 _04929 PFR28_04930: PFR28_04930 - Imidazole glycerol phosphate synthase subunit HisH, at 5,623,593 to 5,624,231 _04930 PFR28_04931: PFR28_04931 - hypothetical protein, at 5,624,231 to 5,624,485 _04931 PFR28_04932: PFR28_04932 - 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase, at 5,624,528 to 5,625,265 _04932 Position (kb) 5622 5623 5624Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 5622.117 kb on - strand, within PFR28_04928at 5622.117 kb on - strand, within PFR28_04928at 5622.137 kb on + strand, within PFR28_04928at 5622.138 kb on - strand, within PFR28_04928at 5622.138 kb on - strand, within PFR28_04928at 5622.138 kb on - strand, within PFR28_04928at 5622.138 kb on - strand, within PFR28_04928at 5622.170 kb on + strand, within PFR28_04928at 5622.170 kb on + strand, within PFR28_04928at 5622.170 kb on + strand, within PFR28_04928at 5622.171 kb on - strand, within PFR28_04928at 5622.248 kb on + strand, within PFR28_04928at 5622.249 kb on - strand, within PFR28_04928at 5622.249 kb on - strand, within PFR28_04928at 5622.249 kb on - strand, within PFR28_04928at 5622.249 kb on - strand, within PFR28_04928at 5622.249 kb on - strand, within PFR28_04928at 5622.249 kb on - strand, within PFR28_04928at 5622.249 kb on - strand, within PFR28_04928at 5622.279 kb on - strand, within PFR28_04928at 5622.380 kb on + strand, within PFR28_04928at 5622.380 kb on + strand, within PFR28_04928at 5622.380 kb on + strand, within PFR28_04928at 5622.380 kb on + strand, within PFR28_04928at 5622.380 kb on + strand, within PFR28_04928at 5622.380 kb on + strand, within PFR28_04928at 5622.380 kb on + strand, within PFR28_04928at 5622.381 kb on - strand, within PFR28_04928at 5622.381 kb on - strand, within PFR28_04928at 5622.381 kb on - strand, within PFR28_04928at 5622.381 kb on - strand, within PFR28_04928at 5622.381 kb on - strand, within PFR28_04928at 5622.428 kb on + strand, within PFR28_04928at 5622.428 kb on + strand, within PFR28_04928at 5622.428 kb on + strand, within PFR28_04928at 5622.443 kb on + strand, within PFR28_04928at 5622.443 kb on + strand, within PFR28_04928at 5622.443 kb on + strand, within PFR28_04928at 5622.443 kb on + strand, within PFR28_04928at 5622.443 kb on + strand, within PFR28_04928at 5622.443 kb on + strand, within PFR28_04928at 5622.443 kb on + strand, within PFR28_04928at 5622.443 kb on + strand, within PFR28_04928at 5622.443 kb on + strand, within PFR28_04928at 5622.443 kb on + strand, within PFR28_04928at 5622.443 kb on + strand, within PFR28_04928at 5622.443 kb on + strand, within PFR28_04928at 5622.443 kb on + strand, within PFR28_04928at 5622.444 kb on - strand, within PFR28_04928at 5622.444 kb on - strand, within PFR28_04928at 5622.444 kb on - strand, within PFR28_04928at 5622.444 kb on - strand, within PFR28_04928at 5622.444 kb on - strand, within PFR28_04928at 5622.444 kb on - strand, within PFR28_04928at 5622.444 kb on - strand, within PFR28_04928at 5622.444 kb on - strand, within PFR28_04928at 5622.444 kb on - strand, within PFR28_04928at 5622.512 kb on + strand, within PFR28_04928at 5622.512 kb on + strand, within PFR28_04928at 5622.512 kb on + strand, within PFR28_04928at 5622.513 kb on - strand, within PFR28_04928at 5622.513 kb on - strand, within PFR28_04928at 5622.513 kb on - strand, within PFR28_04928at 5622.513 kb on - strand, within PFR28_04928at 5622.513 kb on - strand, within PFR28_04928at 5622.513 kb on - strand, within PFR28_04928at 5622.724 kb on - strandat 5622.750 kb on + strandat 5622.751 kb on - strandat 5622.751 kb on - strandat 5622.872 kb on + strandat 5622.872 kb on + strandat 5622.872 kb on + strandat 5622.872 kb on + strandat 5622.872 kb on + strandat 5622.872 kb on + strandat 5622.872 kb on + strandat 5622.872 kb on + strandat 5622.872 kb on + strandat 5622.872 kb on + strandat 5622.872 kb on + strandat 5622.873 kb on - strandat 5622.873 kb on - strandat 5622.873 kb on - strandat 5622.873 kb on - strandat 5622.873 kb on - strandat 5622.884 kb on + strandat 5622.885 kb on - strandat 5622.885 kb on - strandat 5622.956 kb on + strandat 5622.956 kb on + strandat 5622.956 kb on + strandat 5622.957 kb on - strandat 5622.958 kb on + strandat 5623.011 kb on + strandat 5623.011 kb on + strandat 5623.011 kb on + strandat 5623.011 kb on + strandat 5623.011 kb on + strandat 5623.012 kb on - strandat 5623.012 kb on - strandat 5623.185 kb on + strand, within PFR28_04929at 5623.240 kb on - strand, within PFR28_04929at 5623.240 kb on - strand, within PFR28_04929at 5623.267 kb on - strand, within PFR28_04929at 5623.288 kb on + strand, within PFR28_04929at 5623.288 kb on + strand, within PFR28_04929at 5623.288 kb on + strand, within PFR28_04929at 5623.288 kb on + strand, within PFR28_04929at 5623.288 kb on + strand, within PFR28_04929at 5623.288 kb on + strand, within PFR28_04929at 5623.289 kb on - strand, within PFR28_04929at 5623.366 kb on + strand, within PFR28_04929at 5623.367 kb on - strand, within PFR28_04929at 5623.367 kb on - strand, within PFR28_04929at 5623.591 kb on + strandat 5623.591 kb on + strandat 5623.591 kb on + strandat 5623.591 kb on + strandat 5623.592 kb on - strandat 5623.617 kb on + strandat 5623.617 kb on + strandat 5623.726 kb on + strand, within PFR28_04930at 5623.895 kb on + strand, within PFR28_04930at 5623.896 kb on - strand, within PFR28_04930at 5624.055 kb on + strand, within PFR28_04930at 5624.055 kb on + strand, within PFR28_04930at 5624.055 kb on + strand, within PFR28_04930at 5624.055 kb on + strand, within PFR28_04930at 5624.056 kb on - strand, within PFR28_04930at 5624.056 kb on - strand, within PFR28_04930at 5624.056 kb on - strand, within PFR28_04930at 5624.056 kb on - strand, within PFR28_04930at 5624.056 kb on - strand, within PFR28_04930at 5624.056 kb on - strand, within PFR28_04930at 5624.056 kb on - strand, within PFR28_04930at 5624.056 kb on - strand, within PFR28_04930at 5624.056 kb on - strand, within PFR28_04930at 5624.058 kb on + strand, within PFR28_04930at 5624.058 kb on + strand, within PFR28_04930at 5624.058 kb on + strand, within PFR28_04930at 5624.058 kb on + strand, within PFR28_04930at 5624.058 kb on + strand, within PFR28_04930at 5624.059 kb on - strand, within PFR28_04930at 5624.059 kb on - strand, within PFR28_04930at 5624.059 kb on - strand, within PFR28_04930at 5624.059 kb on - strand, within PFR28_04930at 5624.059 kb on - strand, within PFR28_04930at 5624.059 kb on - strand, within PFR28_04930at 5624.059 kb on - strand, within PFR28_04930at 5624.059 kb on - strand, within PFR28_04930at 5624.059 kb on - strand, within PFR28_04930at 5624.103 kb on + strand, within PFR28_04930at 5624.103 kb on + strand, within PFR28_04930at 5624.104 kb on - strand, within PFR28_04930at 5624.104 kb on - strand, within PFR28_04930at 5624.394 kb on - strand, within PFR28_04931at 5624.394 kb on - strand, within PFR28_04931at 5624.396 kb on + strand, within PFR28_04931at 5624.396 kb on + strand, within PFR28_04931at 5624.431 kb on + strand, within PFR28_04931at 5624.431 kb on + strand, within PFR28_04931at 5624.432 kb on - strand, within PFR28_04931at 5624.537 kb on - strandat 5624.571 kb on + strandat 5624.571 kb on + strandat 5624.571 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C) 10 mM
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5,622,117 - PFR28_04928 0.64 -0.0
5,622,117 - PFR28_04928 0.64 +0.2
5,622,137 + PFR28_04928 0.66 -0.5
5,622,138 - PFR28_04928 0.66 +0.4
5,622,138 - PFR28_04928 0.66 +0.7
5,622,138 - PFR28_04928 0.66 -0.1
5,622,138 - PFR28_04928 0.66 -0.7
5,622,170 + PFR28_04928 0.68 -0.8
5,622,170 + PFR28_04928 0.68 -1.3
5,622,170 + PFR28_04928 0.68 -0.2
5,622,171 - PFR28_04928 0.68 -2.7
5,622,248 + PFR28_04928 0.72 -0.7
5,622,249 - PFR28_04928 0.72 -0.3
5,622,249 - PFR28_04928 0.72 +1.0
5,622,249 - PFR28_04928 0.72 -0.5
5,622,249 - PFR28_04928 0.72 +0.2
5,622,249 - PFR28_04928 0.72 +0.1
5,622,249 - PFR28_04928 0.72 +0.1
5,622,249 - PFR28_04928 0.72 -0.1
5,622,279 - PFR28_04928 0.74 +0.2
5,622,380 + PFR28_04928 0.80 +0.4
5,622,380 + PFR28_04928 0.80 -1.8
5,622,380 + PFR28_04928 0.80 +1.9
5,622,380 + PFR28_04928 0.80 +1.7
5,622,380 + PFR28_04928 0.80 -0.0
5,622,380 + PFR28_04928 0.80 -0.5
5,622,380 + PFR28_04928 0.80 -1.2
5,622,381 - PFR28_04928 0.80 -0.7
5,622,381 - PFR28_04928 0.80 -0.3
5,622,381 - PFR28_04928 0.80 -1.0
5,622,381 - PFR28_04928 0.80 -0.2
5,622,381 - PFR28_04928 0.80 -0.9
5,622,428 + PFR28_04928 0.83 -0.3
5,622,428 + PFR28_04928 0.83 -0.1
5,622,428 + PFR28_04928 0.83 +1.1
5,622,443 + PFR28_04928 0.84 +0.8
5,622,443 + PFR28_04928 0.84 -1.8
5,622,443 + PFR28_04928 0.84 +1.6
5,622,443 + PFR28_04928 0.84 -0.1
5,622,443 + PFR28_04928 0.84 -0.6
5,622,443 + PFR28_04928 0.84 +1.0
5,622,443 + PFR28_04928 0.84 +0.1
5,622,443 + PFR28_04928 0.84 +0.5
5,622,443 + PFR28_04928 0.84 -1.3
5,622,443 + PFR28_04928 0.84 +0.3
5,622,443 + PFR28_04928 0.84 -0.3
5,622,443 + PFR28_04928 0.84 +0.5
5,622,443 + PFR28_04928 0.84 +0.2
5,622,444 - PFR28_04928 0.84 -1.0
5,622,444 - PFR28_04928 0.84 -0.5
5,622,444 - PFR28_04928 0.84 -1.3
5,622,444 - PFR28_04928 0.84 +1.1
5,622,444 - PFR28_04928 0.84 -0.1
5,622,444 - PFR28_04928 0.84 -0.9
5,622,444 - PFR28_04928 0.84 +0.8
5,622,444 - PFR28_04928 0.84 -0.5
5,622,444 - PFR28_04928 0.84 -0.4
5,622,512 + PFR28_04928 0.88 +0.2
5,622,512 + PFR28_04928 0.88 -0.0
5,622,512 + PFR28_04928 0.88 -0.0
5,622,513 - PFR28_04928 0.88 -0.7
5,622,513 - PFR28_04928 0.88 +0.8
5,622,513 - PFR28_04928 0.88 -0.6
5,622,513 - PFR28_04928 0.88 -0.7
5,622,513 - PFR28_04928 0.88 +0.4
5,622,513 - PFR28_04928 0.88 +0.1
5,622,724 - -2.0
5,622,750 + +0.1
5,622,751 - +0.3
5,622,751 - +1.0
5,622,872 + -0.1
5,622,872 + +0.1
5,622,872 + -0.4
5,622,872 + -1.1
5,622,872 + +0.1
5,622,872 + -0.9
5,622,872 + +0.5
5,622,872 + +0.4
5,622,872 + -0.1
5,622,872 + +0.9
5,622,872 + +0.1
5,622,873 - -1.8
5,622,873 - -0.7
5,622,873 - +0.3
5,622,873 - +0.4
5,622,873 - +0.2
5,622,884 + +0.6
5,622,885 - +0.1
5,622,885 - +0.9
5,622,956 + +0.6
5,622,956 + -1.0
5,622,956 + -0.1
5,622,957 - -2.6
5,622,958 + -0.6
5,623,011 + -2.7
5,623,011 + -3.5
5,623,011 + -2.7
5,623,011 + -0.3
5,623,011 + -3.6
5,623,012 - -4.2
5,623,012 - -2.8
5,623,185 + PFR28_04929 0.31 -2.3
5,623,240 - PFR28_04929 0.40 -1.7
5,623,240 - PFR28_04929 0.40 -0.7
5,623,267 - PFR28_04929 0.45 -0.7
5,623,288 + PFR28_04929 0.48 -4.1
5,623,288 + PFR28_04929 0.48 -2.6
5,623,288 + PFR28_04929 0.48 -2.7
5,623,288 + PFR28_04929 0.48 -2.3
5,623,288 + PFR28_04929 0.48 -2.4
5,623,288 + PFR28_04929 0.48 -3.3
5,623,289 - PFR28_04929 0.49 -2.5
5,623,366 + PFR28_04929 0.62 -0.3
5,623,367 - PFR28_04929 0.62 -3.1
5,623,367 - PFR28_04929 0.62 -2.8
5,623,591 + -3.2
5,623,591 + -2.9
5,623,591 + -1.9
5,623,591 + -2.6
5,623,592 - -2.6
5,623,617 + -4.0
5,623,617 + -3.8
5,623,726 + PFR28_04930 0.21 -1.9
5,623,895 + PFR28_04930 0.47 -2.7
5,623,896 - PFR28_04930 0.47 -3.4
5,624,055 + PFR28_04930 0.72 -3.3
5,624,055 + PFR28_04930 0.72 -3.7
5,624,055 + PFR28_04930 0.72 -1.3
5,624,055 + PFR28_04930 0.72 -1.9
5,624,056 - PFR28_04930 0.72 -2.8
5,624,056 - PFR28_04930 0.72 -3.1
5,624,056 - PFR28_04930 0.72 -3.6
5,624,056 - PFR28_04930 0.72 -2.0
5,624,056 - PFR28_04930 0.72 -4.0
5,624,056 - PFR28_04930 0.72 -4.5
5,624,056 - PFR28_04930 0.72 -3.3
5,624,056 - PFR28_04930 0.72 -3.2
5,624,056 - PFR28_04930 0.72 -2.3
5,624,058 + PFR28_04930 0.73 -1.5
5,624,058 + PFR28_04930 0.73 -2.3
5,624,058 + PFR28_04930 0.73 -2.7
5,624,058 + PFR28_04930 0.73 -1.9
5,624,058 + PFR28_04930 0.73 -2.0
5,624,059 - PFR28_04930 0.73 -3.9
5,624,059 - PFR28_04930 0.73 -2.9
5,624,059 - PFR28_04930 0.73 -3.7
5,624,059 - PFR28_04930 0.73 -3.3
5,624,059 - PFR28_04930 0.73 -2.4
5,624,059 - PFR28_04930 0.73 -1.7
5,624,059 - PFR28_04930 0.73 -0.7
5,624,059 - PFR28_04930 0.73 -1.7
5,624,059 - PFR28_04930 0.73 -3.6
5,624,103 + PFR28_04930 0.80 -1.3
5,624,103 + PFR28_04930 0.80 -4.6
5,624,104 - PFR28_04930 0.80 -3.2
5,624,104 - PFR28_04930 0.80 -3.1
5,624,394 - PFR28_04931 0.64 -1.9
5,624,394 - PFR28_04931 0.64 -3.7
5,624,396 + PFR28_04931 0.65 -0.3
5,624,396 + PFR28_04931 0.65 +0.1
5,624,431 + PFR28_04931 0.78 +0.6
5,624,431 + PFR28_04931 0.78 +1.3
5,624,432 - PFR28_04931 0.79 -4.0
5,624,537 - -1.7
5,624,571 + -2.8
5,624,571 + -3.5
5,624,571 + -2.9

Or see this region's nucleotide sequence