Strain Fitness in Pseudomonas sp. RS175 around PFR28_04834

Experiment: D-Glucose (C) 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_04832 and PFR28_04833 are separated by 105 nucleotidesPFR28_04833 and PFR28_04834 are separated by 38 nucleotidesPFR28_04834 and PFR28_04835 are separated by 137 nucleotidesPFR28_04835 and PFR28_04836 are separated by 82 nucleotides PFR28_04832: PFR28_04832 - putative phosphatase, at 5,524,118 to 5,524,774 _04832 PFR28_04833: PFR28_04833 - hypothetical protein, at 5,524,880 to 5,525,308 _04833 PFR28_04834: PFR28_04834 - L-threonine dehydratase biosynthetic IlvA, at 5,525,347 to 5,526,861 _04834 PFR28_04835: PFR28_04835 - Ribose-5-phosphate isomerase A, at 5,526,999 to 5,527,670 _04835 PFR28_04836: PFR28_04836 - putative protein YjiK, at 5,527,753 to 5,528,670 _04836 Position (kb) 5525 5526 5527Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 5524.356 kb on - strand, within PFR28_04832at 5524.383 kb on + strand, within PFR28_04832at 5524.384 kb on - strand, within PFR28_04832at 5524.542 kb on - strand, within PFR28_04832at 5524.563 kb on + strand, within PFR28_04832at 5524.563 kb on + strand, within PFR28_04832at 5524.563 kb on + strand, within PFR28_04832at 5524.564 kb on - strand, within PFR28_04832at 5524.564 kb on - strand, within PFR28_04832at 5524.564 kb on - strand, within PFR28_04832at 5524.564 kb on - strand, within PFR28_04832at 5524.564 kb on - strand, within PFR28_04832at 5524.564 kb on - strand, within PFR28_04832at 5524.564 kb on - strand, within PFR28_04832at 5524.564 kb on - strand, within PFR28_04832at 5524.564 kb on - strand, within PFR28_04832at 5524.564 kb on - strand, within PFR28_04832at 5524.640 kb on + strand, within PFR28_04832at 5524.640 kb on + strand, within PFR28_04832at 5524.640 kb on + strand, within PFR28_04832at 5524.640 kb on + strand, within PFR28_04832at 5524.640 kb on + strand, within PFR28_04832at 5524.640 kb on + strand, within PFR28_04832at 5524.640 kb on + strand, within PFR28_04832at 5524.640 kb on + strand, within PFR28_04832at 5524.640 kb on + strand, within PFR28_04832at 5524.640 kb on + strand, within PFR28_04832at 5524.640 kb on + strand, within PFR28_04832at 5524.641 kb on - strand, within PFR28_04832at 5524.641 kb on - strand, within PFR28_04832at 5524.641 kb on - strand, within PFR28_04832at 5524.641 kb on - strand, within PFR28_04832at 5524.641 kb on - strand, within PFR28_04832at 5524.641 kb on - strand, within PFR28_04832at 5524.641 kb on - strand, within PFR28_04832at 5524.641 kb on - strand, within PFR28_04832at 5524.641 kb on - strand, within PFR28_04832at 5524.647 kb on - strand, within PFR28_04832at 5524.647 kb on - strand, within PFR28_04832at 5524.647 kb on - strand, within PFR28_04832at 5524.684 kb on - strand, within PFR28_04832at 5524.882 kb on - strandat 5524.882 kb on - strandat 5524.882 kb on - strandat 5525.040 kb on + strand, within PFR28_04833at 5525.040 kb on + strand, within PFR28_04833at 5525.040 kb on + strand, within PFR28_04833at 5525.041 kb on - strand, within PFR28_04833at 5525.321 kb on + strandat 5525.321 kb on + strandat 5525.341 kb on - strandat 5525.366 kb on + strandat 5525.367 kb on - strandat 5525.367 kb on - strandat 5525.587 kb on + strand, within PFR28_04834at 5525.587 kb on + strand, within PFR28_04834at 5525.587 kb on + strand, within PFR28_04834at 5525.588 kb on - strand, within PFR28_04834at 5525.628 kb on + strand, within PFR28_04834at 5525.628 kb on + strand, within PFR28_04834at 5525.628 kb on + strand, within PFR28_04834at 5525.629 kb on - strand, within PFR28_04834at 5525.629 kb on - strand, within PFR28_04834at 5525.629 kb on - strand, within PFR28_04834at 5525.629 kb on - strand, within PFR28_04834at 5525.780 kb on + strand, within PFR28_04834at 5525.780 kb on + strand, within PFR28_04834at 5525.780 kb on + strand, within PFR28_04834at 5525.781 kb on - strand, within PFR28_04834at 5525.781 kb on - strand, within PFR28_04834at 5525.781 kb on - strand, within PFR28_04834at 5525.786 kb on + strand, within PFR28_04834at 5525.786 kb on + strand, within PFR28_04834at 5525.787 kb on - strand, within PFR28_04834at 5525.787 kb on - strand, within PFR28_04834at 5525.996 kb on + strand, within PFR28_04834at 5525.996 kb on + strand, within PFR28_04834at 5525.996 kb on + strand, within PFR28_04834at 5525.997 kb on - strand, within PFR28_04834at 5525.997 kb on - strand, within PFR28_04834at 5525.997 kb on - strand, within PFR28_04834at 5525.997 kb on - strand, within PFR28_04834at 5525.997 kb on - strand, within PFR28_04834at 5525.997 kb on - strand, within PFR28_04834at 5525.997 kb on - strand, within PFR28_04834at 5526.059 kb on + strand, within PFR28_04834at 5526.059 kb on + strand, within PFR28_04834at 5526.059 kb on + strand, within PFR28_04834at 5526.059 kb on + strand, within PFR28_04834at 5526.059 kb on + strand, within PFR28_04834at 5526.060 kb on - strand, within PFR28_04834at 5526.060 kb on - strand, within PFR28_04834at 5526.060 kb on - strand, within PFR28_04834at 5526.060 kb on - strand, within PFR28_04834at 5526.060 kb on - strand, within PFR28_04834at 5526.063 kb on + strand, within PFR28_04834at 5526.063 kb on + strand, within PFR28_04834at 5526.063 kb on + strand, within PFR28_04834at 5526.063 kb on + strand, within PFR28_04834at 5526.063 kb on + strand, within PFR28_04834at 5526.063 kb on + strand, within PFR28_04834at 5526.063 kb on + strand, within PFR28_04834at 5526.063 kb on + strand, within PFR28_04834at 5526.063 kb on + strand, within PFR28_04834at 5526.064 kb on - strand, within PFR28_04834at 5526.064 kb on - strand, within PFR28_04834at 5526.064 kb on - strand, within PFR28_04834at 5526.064 kb on - strand, within PFR28_04834at 5526.199 kb on + strand, within PFR28_04834at 5526.199 kb on + strand, within PFR28_04834at 5526.200 kb on - strand, within PFR28_04834at 5526.287 kb on + strand, within PFR28_04834at 5526.287 kb on + strand, within PFR28_04834at 5526.287 kb on + strand, within PFR28_04834at 5526.288 kb on - strand, within PFR28_04834at 5526.288 kb on - strand, within PFR28_04834at 5526.288 kb on - strand, within PFR28_04834at 5526.288 kb on - strand, within PFR28_04834at 5526.296 kb on + strand, within PFR28_04834at 5526.296 kb on + strand, within PFR28_04834at 5526.297 kb on - strand, within PFR28_04834at 5526.425 kb on + strand, within PFR28_04834at 5526.425 kb on + strand, within PFR28_04834at 5526.437 kb on + strand, within PFR28_04834at 5526.437 kb on + strand, within PFR28_04834at 5526.438 kb on - strand, within PFR28_04834at 5526.438 kb on - strand, within PFR28_04834at 5526.443 kb on + strand, within PFR28_04834at 5526.444 kb on - strand, within PFR28_04834at 5526.473 kb on + strand, within PFR28_04834at 5526.473 kb on + strand, within PFR28_04834at 5526.473 kb on + strand, within PFR28_04834at 5526.474 kb on - strand, within PFR28_04834at 5526.474 kb on - strand, within PFR28_04834at 5526.474 kb on - strand, within PFR28_04834at 5526.474 kb on - strand, within PFR28_04834at 5526.474 kb on - strand, within PFR28_04834at 5526.596 kb on - strand, within PFR28_04834at 5526.695 kb on + strand, within PFR28_04834at 5526.695 kb on + strand, within PFR28_04834at 5526.696 kb on - strand, within PFR28_04834at 5526.696 kb on - strand, within PFR28_04834at 5526.819 kb on - strandat 5526.848 kb on + strandat 5526.849 kb on - strandat 5526.849 kb on - strandat 5526.849 kb on - strandat 5526.849 kb on - strandat 5526.955 kb on - strandat 5526.956 kb on + strandat 5526.956 kb on + strandat 5526.956 kb on + strandat 5526.957 kb on - strandat 5526.957 kb on - strandat 5526.957 kb on - strandat 5526.973 kb on - strandat 5526.973 kb on - strandat 5527.722 kb on + strandat 5527.781 kb on + strandat 5527.781 kb on + strandat 5527.781 kb on + strandat 5527.781 kb on + strandat 5527.782 kb on - strandat 5527.782 kb on - strandat 5527.782 kb on - strandat 5527.808 kb on + strandat 5527.808 kb on + strandat 5527.808 kb on + strandat 5527.808 kb on + strandat 5527.809 kb on - strandat 5527.809 kb on - strandat 5527.809 kb on - strandat 5527.809 kb on - strandat 5527.809 kb on - strandat 5527.809 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C) 10 mM
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5,524,356 - PFR28_04832 0.36 -1.4
5,524,383 + PFR28_04832 0.40 -2.6
5,524,384 - PFR28_04832 0.40 -3.1
5,524,542 - PFR28_04832 0.65 -2.0
5,524,563 + PFR28_04832 0.68 -1.5
5,524,563 + PFR28_04832 0.68 -2.5
5,524,563 + PFR28_04832 0.68 -2.3
5,524,564 - PFR28_04832 0.68 -1.0
5,524,564 - PFR28_04832 0.68 -1.9
5,524,564 - PFR28_04832 0.68 -2.9
5,524,564 - PFR28_04832 0.68 -3.6
5,524,564 - PFR28_04832 0.68 -2.5
5,524,564 - PFR28_04832 0.68 -2.2
5,524,564 - PFR28_04832 0.68 -3.4
5,524,564 - PFR28_04832 0.68 -2.2
5,524,564 - PFR28_04832 0.68 -3.5
5,524,564 - PFR28_04832 0.68 -1.9
5,524,640 + PFR28_04832 0.79 -3.1
5,524,640 + PFR28_04832 0.79 -2.7
5,524,640 + PFR28_04832 0.79 -2.2
5,524,640 + PFR28_04832 0.79 -2.7
5,524,640 + PFR28_04832 0.79 -1.1
5,524,640 + PFR28_04832 0.79 -1.2
5,524,640 + PFR28_04832 0.79 -3.7
5,524,640 + PFR28_04832 0.79 -2.3
5,524,640 + PFR28_04832 0.79 -3.4
5,524,640 + PFR28_04832 0.79 -2.4
5,524,640 + PFR28_04832 0.79 -1.5
5,524,641 - PFR28_04832 0.80 -1.3
5,524,641 - PFR28_04832 0.80 -2.5
5,524,641 - PFR28_04832 0.80 -1.3
5,524,641 - PFR28_04832 0.80 -1.3
5,524,641 - PFR28_04832 0.80 -2.5
5,524,641 - PFR28_04832 0.80 -3.3
5,524,641 - PFR28_04832 0.80 -1.9
5,524,641 - PFR28_04832 0.80 -1.5
5,524,641 - PFR28_04832 0.80 -2.4
5,524,647 - PFR28_04832 0.81 -2.4
5,524,647 - PFR28_04832 0.81 -2.3
5,524,647 - PFR28_04832 0.81 -0.7
5,524,684 - PFR28_04832 0.86 -3.0
5,524,882 - +0.8
5,524,882 - +0.7
5,524,882 - -0.6
5,525,040 + PFR28_04833 0.37 +0.0
5,525,040 + PFR28_04833 0.37 +0.7
5,525,040 + PFR28_04833 0.37 +0.2
5,525,041 - PFR28_04833 0.38 -1.5
5,525,321 + +0.7
5,525,321 + -0.8
5,525,341 - +0.1
5,525,366 + -1.9
5,525,367 - -0.2
5,525,367 - -1.4
5,525,587 + PFR28_04834 0.16 -3.4
5,525,587 + PFR28_04834 0.16 -3.1
5,525,587 + PFR28_04834 0.16 -2.5
5,525,588 - PFR28_04834 0.16 -3.0
5,525,628 + PFR28_04834 0.19 -3.1
5,525,628 + PFR28_04834 0.19 -3.2
5,525,628 + PFR28_04834 0.19 -0.7
5,525,629 - PFR28_04834 0.19 -2.4
5,525,629 - PFR28_04834 0.19 -2.4
5,525,629 - PFR28_04834 0.19 -2.8
5,525,629 - PFR28_04834 0.19 -4.3
5,525,780 + PFR28_04834 0.29 -2.4
5,525,780 + PFR28_04834 0.29 -2.2
5,525,780 + PFR28_04834 0.29 -3.1
5,525,781 - PFR28_04834 0.29 -4.8
5,525,781 - PFR28_04834 0.29 -3.0
5,525,781 - PFR28_04834 0.29 -2.7
5,525,786 + PFR28_04834 0.29 -3.0
5,525,786 + PFR28_04834 0.29 -2.3
5,525,787 - PFR28_04834 0.29 -4.7
5,525,787 - PFR28_04834 0.29 -3.1
5,525,996 + PFR28_04834 0.43 -3.2
5,525,996 + PFR28_04834 0.43 -1.2
5,525,996 + PFR28_04834 0.43 -2.9
5,525,997 - PFR28_04834 0.43 -2.9
5,525,997 - PFR28_04834 0.43 -2.2
5,525,997 - PFR28_04834 0.43 -2.3
5,525,997 - PFR28_04834 0.43 -2.4
5,525,997 - PFR28_04834 0.43 -2.9
5,525,997 - PFR28_04834 0.43 -3.1
5,525,997 - PFR28_04834 0.43 -3.6
5,526,059 + PFR28_04834 0.47 -3.6
5,526,059 + PFR28_04834 0.47 -2.1
5,526,059 + PFR28_04834 0.47 -0.6
5,526,059 + PFR28_04834 0.47 -3.0
5,526,059 + PFR28_04834 0.47 -3.9
5,526,060 - PFR28_04834 0.47 -2.3
5,526,060 - PFR28_04834 0.47 -0.7
5,526,060 - PFR28_04834 0.47 -2.9
5,526,060 - PFR28_04834 0.47 -1.0
5,526,060 - PFR28_04834 0.47 -2.4
5,526,063 + PFR28_04834 0.47 -4.1
5,526,063 + PFR28_04834 0.47 -2.1
5,526,063 + PFR28_04834 0.47 -3.0
5,526,063 + PFR28_04834 0.47 -0.1
5,526,063 + PFR28_04834 0.47 -2.9
5,526,063 + PFR28_04834 0.47 -2.2
5,526,063 + PFR28_04834 0.47 -3.0
5,526,063 + PFR28_04834 0.47 -2.0
5,526,063 + PFR28_04834 0.47 -1.5
5,526,064 - PFR28_04834 0.47 -1.3
5,526,064 - PFR28_04834 0.47 -1.0
5,526,064 - PFR28_04834 0.47 -1.7
5,526,064 - PFR28_04834 0.47 -3.8
5,526,199 + PFR28_04834 0.56 -1.2
5,526,199 + PFR28_04834 0.56 -2.4
5,526,200 - PFR28_04834 0.56 -2.0
5,526,287 + PFR28_04834 0.62 -3.0
5,526,287 + PFR28_04834 0.62 -1.0
5,526,287 + PFR28_04834 0.62 -3.2
5,526,288 - PFR28_04834 0.62 -4.5
5,526,288 - PFR28_04834 0.62 -2.0
5,526,288 - PFR28_04834 0.62 -0.7
5,526,288 - PFR28_04834 0.62 -3.2
5,526,296 + PFR28_04834 0.63 -4.7
5,526,296 + PFR28_04834 0.63 -3.8
5,526,297 - PFR28_04834 0.63 -2.8
5,526,425 + PFR28_04834 0.71 -4.3
5,526,425 + PFR28_04834 0.71 -4.2
5,526,437 + PFR28_04834 0.72 -4.4
5,526,437 + PFR28_04834 0.72 -2.3
5,526,438 - PFR28_04834 0.72 -3.1
5,526,438 - PFR28_04834 0.72 -2.5
5,526,443 + PFR28_04834 0.72 -3.7
5,526,444 - PFR28_04834 0.72 -3.2
5,526,473 + PFR28_04834 0.74 -4.4
5,526,473 + PFR28_04834 0.74 -2.0
5,526,473 + PFR28_04834 0.74 -2.8
5,526,474 - PFR28_04834 0.74 -3.6
5,526,474 - PFR28_04834 0.74 -2.6
5,526,474 - PFR28_04834 0.74 -1.7
5,526,474 - PFR28_04834 0.74 -1.9
5,526,474 - PFR28_04834 0.74 -1.3
5,526,596 - PFR28_04834 0.82 -3.8
5,526,695 + PFR28_04834 0.89 -4.2
5,526,695 + PFR28_04834 0.89 -4.9
5,526,696 - PFR28_04834 0.89 -3.2
5,526,696 - PFR28_04834 0.89 -4.3
5,526,819 - -2.0
5,526,848 + -3.4
5,526,849 - -3.1
5,526,849 - -3.6
5,526,849 - -0.7
5,526,849 - +0.3
5,526,955 - -0.7
5,526,956 + -0.5
5,526,956 + +0.2
5,526,956 + -0.2
5,526,957 - -0.1
5,526,957 - +0.8
5,526,957 - -0.0
5,526,973 - +0.5
5,526,973 - +0.2
5,527,722 + +0.1
5,527,781 + -0.3
5,527,781 + -1.0
5,527,781 + +0.3
5,527,781 + +1.3
5,527,782 - -0.6
5,527,782 - -1.1
5,527,782 - +0.2
5,527,808 + +0.0
5,527,808 + -0.3
5,527,808 + +0.8
5,527,808 + -0.6
5,527,809 - -0.1
5,527,809 - -0.0
5,527,809 - -0.4
5,527,809 - +0.9
5,527,809 - -0.0
5,527,809 - +0.5

Or see this region's nucleotide sequence