Strain Fitness in Pseudomonas sp. RS175 around PFR28_04782

Experiment: D-Glucose (C) 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_04781 and PFR28_04782 are separated by 205 nucleotidesPFR28_04782 and PFR28_04783 are separated by 14 nucleotides PFR28_04781: PFR28_04781 - hypothetical protein, at 5,446,439 to 5,447,128 _04781 PFR28_04782: PFR28_04782 - hypothetical protein, at 5,447,334 to 5,448,023 _04782 PFR28_04783: PFR28_04783 - hypothetical protein, at 5,448,038 to 5,449,984 _04783 Position (kb) 5447 5448 5449Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 5446.403 kb on + strandat 5446.404 kb on - strandat 5446.404 kb on - strandat 5446.404 kb on - strandat 5446.404 kb on - strandat 5446.404 kb on - strandat 5446.404 kb on - strandat 5446.404 kb on - strandat 5446.404 kb on - strandat 5446.404 kb on - strandat 5446.414 kb on + strandat 5446.414 kb on + strandat 5446.414 kb on + strandat 5446.414 kb on + strandat 5446.415 kb on - strandat 5446.415 kb on - strandat 5446.415 kb on - strandat 5446.461 kb on + strandat 5446.475 kb on + strandat 5446.681 kb on - strand, within PFR28_04781at 5446.755 kb on + strand, within PFR28_04781at 5446.756 kb on - strand, within PFR28_04781at 5446.756 kb on - strand, within PFR28_04781at 5446.756 kb on - strand, within PFR28_04781at 5446.842 kb on + strand, within PFR28_04781at 5446.842 kb on + strand, within PFR28_04781at 5446.842 kb on + strand, within PFR28_04781at 5446.842 kb on + strand, within PFR28_04781at 5446.842 kb on + strand, within PFR28_04781at 5446.842 kb on + strand, within PFR28_04781at 5446.842 kb on + strand, within PFR28_04781at 5446.843 kb on - strand, within PFR28_04781at 5446.843 kb on - strand, within PFR28_04781at 5446.843 kb on - strand, within PFR28_04781at 5446.843 kb on - strand, within PFR28_04781at 5446.843 kb on - strand, within PFR28_04781at 5446.843 kb on - strand, within PFR28_04781at 5446.843 kb on - strand, within PFR28_04781at 5446.843 kb on - strand, within PFR28_04781at 5446.843 kb on - strand, within PFR28_04781at 5446.843 kb on - strand, within PFR28_04781at 5446.843 kb on - strand, within PFR28_04781at 5447.148 kb on + strandat 5447.148 kb on + strandat 5447.149 kb on - strandat 5447.151 kb on + strandat 5447.177 kb on + strandat 5447.177 kb on + strandat 5447.177 kb on + strandat 5447.177 kb on + strandat 5447.177 kb on + strandat 5447.178 kb on - strandat 5447.178 kb on - strandat 5447.178 kb on - strandat 5447.178 kb on - strandat 5447.178 kb on - strandat 5447.178 kb on - strandat 5447.178 kb on - strandat 5447.178 kb on - strandat 5447.178 kb on - strandat 5447.178 kb on - strandat 5447.178 kb on - strandat 5447.181 kb on + strandat 5447.181 kb on + strandat 5447.181 kb on + strandat 5447.181 kb on + strandat 5447.181 kb on + strandat 5447.182 kb on - strandat 5447.182 kb on - strandat 5447.227 kb on + strandat 5447.227 kb on + strandat 5447.227 kb on + strandat 5447.326 kb on + strandat 5447.326 kb on + strandat 5447.327 kb on - strandat 5447.327 kb on - strandat 5447.327 kb on - strandat 5447.327 kb on - strandat 5447.466 kb on + strand, within PFR28_04782at 5447.466 kb on + strand, within PFR28_04782at 5447.467 kb on - strand, within PFR28_04782at 5447.628 kb on + strand, within PFR28_04782at 5447.682 kb on + strand, within PFR28_04782at 5447.682 kb on + strand, within PFR28_04782at 5447.682 kb on + strand, within PFR28_04782at 5447.683 kb on - strand, within PFR28_04782at 5447.697 kb on + strand, within PFR28_04782at 5447.697 kb on + strand, within PFR28_04782at 5447.697 kb on + strand, within PFR28_04782at 5447.698 kb on - strand, within PFR28_04782at 5447.698 kb on - strand, within PFR28_04782at 5447.748 kb on + strand, within PFR28_04782at 5447.748 kb on + strand, within PFR28_04782at 5447.748 kb on + strand, within PFR28_04782at 5447.748 kb on + strand, within PFR28_04782at 5447.748 kb on + strand, within PFR28_04782at 5447.748 kb on + strand, within PFR28_04782at 5447.748 kb on + strand, within PFR28_04782at 5447.749 kb on - strand, within PFR28_04782at 5447.749 kb on - strand, within PFR28_04782at 5447.749 kb on - strand, within PFR28_04782at 5447.749 kb on - strand, within PFR28_04782at 5447.780 kb on + strand, within PFR28_04782at 5447.780 kb on + strand, within PFR28_04782at 5447.780 kb on + strand, within PFR28_04782at 5447.780 kb on + strand, within PFR28_04782at 5447.780 kb on + strand, within PFR28_04782at 5447.780 kb on + strand, within PFR28_04782at 5447.780 kb on + strand, within PFR28_04782at 5447.780 kb on + strand, within PFR28_04782at 5447.780 kb on + strand, within PFR28_04782at 5447.780 kb on + strand, within PFR28_04782at 5447.780 kb on + strand, within PFR28_04782at 5447.780 kb on + strand, within PFR28_04782at 5447.780 kb on + strand, within PFR28_04782at 5447.780 kb on + strand, within PFR28_04782at 5447.780 kb on + strand, within PFR28_04782at 5447.780 kb on + strand, within PFR28_04782at 5447.780 kb on + strand, within PFR28_04782at 5447.780 kb on + strand, within PFR28_04782at 5447.780 kb on + strand, within PFR28_04782at 5447.780 kb on + strand, within PFR28_04782at 5447.780 kb on + strand, within PFR28_04782at 5447.780 kb on + strand, within PFR28_04782at 5447.781 kb on - strand, within PFR28_04782at 5447.781 kb on - strand, within PFR28_04782at 5447.781 kb on - strand, within PFR28_04782at 5447.781 kb on - strand, within PFR28_04782at 5447.781 kb on - strand, within PFR28_04782at 5447.781 kb on - strand, within PFR28_04782at 5447.781 kb on - strand, within PFR28_04782at 5447.781 kb on - strand, within PFR28_04782at 5447.781 kb on - strand, within PFR28_04782at 5447.781 kb on - strand, within PFR28_04782at 5447.781 kb on - strand, within PFR28_04782at 5447.781 kb on - strand, within PFR28_04782at 5447.781 kb on - strand, within PFR28_04782at 5447.781 kb on - strand, within PFR28_04782at 5447.781 kb on - strand, within PFR28_04782at 5447.781 kb on - strand, within PFR28_04782at 5447.781 kb on - strand, within PFR28_04782at 5447.781 kb on - strand, within PFR28_04782at 5447.785 kb on + strand, within PFR28_04782at 5447.785 kb on + strand, within PFR28_04782at 5447.785 kb on + strand, within PFR28_04782at 5447.786 kb on - strand, within PFR28_04782at 5447.793 kb on + strand, within PFR28_04782at 5447.793 kb on + strand, within PFR28_04782at 5447.794 kb on - strand, within PFR28_04782at 5447.794 kb on - strand, within PFR28_04782at 5447.794 kb on - strand, within PFR28_04782at 5447.794 kb on - strand, within PFR28_04782at 5447.796 kb on + strand, within PFR28_04782at 5447.796 kb on + strand, within PFR28_04782at 5447.797 kb on - strand, within PFR28_04782at 5447.797 kb on - strand, within PFR28_04782at 5447.797 kb on - strand, within PFR28_04782at 5447.797 kb on - strand, within PFR28_04782at 5447.797 kb on - strand, within PFR28_04782at 5447.797 kb on - strand, within PFR28_04782at 5447.797 kb on - strand, within PFR28_04782at 5447.886 kb on + strand, within PFR28_04782at 5447.886 kb on + strand, within PFR28_04782at 5447.886 kb on + strand, within PFR28_04782at 5447.887 kb on - strand, within PFR28_04782at 5448.017 kb on + strandat 5448.017 kb on + strandat 5448.017 kb on + strandat 5448.017 kb on + strandat 5448.018 kb on - strandat 5448.021 kb on + strandat 5448.022 kb on - strandat 5448.022 kb on - strandat 5448.068 kb on - strandat 5448.068 kb on - strandat 5448.137 kb on + strandat 5448.138 kb on - strandat 5448.138 kb on - strandat 5448.138 kb on - strandat 5448.138 kb on - strandat 5448.138 kb on - strandat 5448.260 kb on + strand, within PFR28_04783at 5448.261 kb on - strand, within PFR28_04783at 5448.264 kb on - strand, within PFR28_04783at 5448.572 kb on + strand, within PFR28_04783at 5448.572 kb on + strand, within PFR28_04783at 5448.572 kb on + strand, within PFR28_04783at 5448.572 kb on + strand, within PFR28_04783at 5448.572 kb on + strand, within PFR28_04783at 5448.572 kb on + strand, within PFR28_04783at 5448.572 kb on + strand, within PFR28_04783at 5448.573 kb on - strand, within PFR28_04783at 5448.573 kb on - strand, within PFR28_04783at 5448.573 kb on - strand, within PFR28_04783at 5448.573 kb on - strand, within PFR28_04783at 5448.573 kb on - strand, within PFR28_04783at 5448.637 kb on + strand, within PFR28_04783at 5448.783 kb on - strand, within PFR28_04783

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C) 10 mM
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5,446,403 + -1.0
5,446,404 - +0.1
5,446,404 - -0.9
5,446,404 - -0.9
5,446,404 - -0.0
5,446,404 - +0.8
5,446,404 - -1.0
5,446,404 - +0.5
5,446,404 - -0.6
5,446,404 - -1.6
5,446,414 + +0.3
5,446,414 + +0.6
5,446,414 + +0.0
5,446,414 + -0.4
5,446,415 - +1.3
5,446,415 - -0.2
5,446,415 - +0.6
5,446,461 + +0.7
5,446,475 + -0.4
5,446,681 - PFR28_04781 0.35 +0.4
5,446,755 + PFR28_04781 0.46 -0.4
5,446,756 - PFR28_04781 0.46 -1.7
5,446,756 - PFR28_04781 0.46 -0.3
5,446,756 - PFR28_04781 0.46 +1.7
5,446,842 + PFR28_04781 0.58 -0.1
5,446,842 + PFR28_04781 0.58 +0.5
5,446,842 + PFR28_04781 0.58 +0.7
5,446,842 + PFR28_04781 0.58 -0.3
5,446,842 + PFR28_04781 0.58 +0.5
5,446,842 + PFR28_04781 0.58 -0.4
5,446,842 + PFR28_04781 0.58 -0.1
5,446,843 - PFR28_04781 0.59 -0.4
5,446,843 - PFR28_04781 0.59 +0.9
5,446,843 - PFR28_04781 0.59 -0.4
5,446,843 - PFR28_04781 0.59 -1.2
5,446,843 - PFR28_04781 0.59 +0.4
5,446,843 - PFR28_04781 0.59 +0.4
5,446,843 - PFR28_04781 0.59 -0.0
5,446,843 - PFR28_04781 0.59 +0.4
5,446,843 - PFR28_04781 0.59 -0.7
5,446,843 - PFR28_04781 0.59 -0.1
5,446,843 - PFR28_04781 0.59 +0.2
5,447,148 + -0.9
5,447,148 + -0.1
5,447,149 - +0.4
5,447,151 + -1.4
5,447,177 + +1.0
5,447,177 + +0.2
5,447,177 + +0.1
5,447,177 + -0.4
5,447,177 + +0.4
5,447,178 - +1.2
5,447,178 - -0.2
5,447,178 - +0.1
5,447,178 - -0.1
5,447,178 - -1.2
5,447,178 - -0.3
5,447,178 - -0.4
5,447,178 - -0.0
5,447,178 - -0.1
5,447,178 - +0.7
5,447,178 - -0.2
5,447,181 + +0.1
5,447,181 + -1.2
5,447,181 + +0.5
5,447,181 + -0.7
5,447,181 + -0.6
5,447,182 - -0.4
5,447,182 - -0.4
5,447,227 + -1.6
5,447,227 + -0.7
5,447,227 + +4.5
5,447,326 + +1.4
5,447,326 + -0.7
5,447,327 - -1.2
5,447,327 - -0.0
5,447,327 - -1.4
5,447,327 - -1.1
5,447,466 + PFR28_04782 0.19 -0.7
5,447,466 + PFR28_04782 0.19 +0.3
5,447,467 - PFR28_04782 0.19 -0.6
5,447,628 + PFR28_04782 0.43 -1.7
5,447,682 + PFR28_04782 0.50 +0.1
5,447,682 + PFR28_04782 0.50 +0.6
5,447,682 + PFR28_04782 0.50 -2.0
5,447,683 - PFR28_04782 0.51 -2.7
5,447,697 + PFR28_04782 0.53 -1.4
5,447,697 + PFR28_04782 0.53 +0.3
5,447,697 + PFR28_04782 0.53 +0.3
5,447,698 - PFR28_04782 0.53 -2.6
5,447,698 - PFR28_04782 0.53 -0.0
5,447,748 + PFR28_04782 0.60 -1.7
5,447,748 + PFR28_04782 0.60 +0.1
5,447,748 + PFR28_04782 0.60 +0.6
5,447,748 + PFR28_04782 0.60 -1.8
5,447,748 + PFR28_04782 0.60 -0.8
5,447,748 + PFR28_04782 0.60 +1.9
5,447,748 + PFR28_04782 0.60 -1.2
5,447,749 - PFR28_04782 0.60 -1.1
5,447,749 - PFR28_04782 0.60 -1.4
5,447,749 - PFR28_04782 0.60 -2.9
5,447,749 - PFR28_04782 0.60 -1.0
5,447,780 + PFR28_04782 0.65 -1.5
5,447,780 + PFR28_04782 0.65 -1.0
5,447,780 + PFR28_04782 0.65 -1.2
5,447,780 + PFR28_04782 0.65 +0.0
5,447,780 + PFR28_04782 0.65 -1.2
5,447,780 + PFR28_04782 0.65 -0.7
5,447,780 + PFR28_04782 0.65 -0.2
5,447,780 + PFR28_04782 0.65 -1.5
5,447,780 + PFR28_04782 0.65 +0.6
5,447,780 + PFR28_04782 0.65 -0.5
5,447,780 + PFR28_04782 0.65 -1.0
5,447,780 + PFR28_04782 0.65 -1.0
5,447,780 + PFR28_04782 0.65 -1.9
5,447,780 + PFR28_04782 0.65 -0.2
5,447,780 + PFR28_04782 0.65 -0.8
5,447,780 + PFR28_04782 0.65 -2.5
5,447,780 + PFR28_04782 0.65 -2.1
5,447,780 + PFR28_04782 0.65 -2.3
5,447,780 + PFR28_04782 0.65 +0.3
5,447,780 + PFR28_04782 0.65 -1.5
5,447,780 + PFR28_04782 0.65 -1.1
5,447,780 + PFR28_04782 0.65 -1.8
5,447,781 - PFR28_04782 0.65 +0.7
5,447,781 - PFR28_04782 0.65 -0.6
5,447,781 - PFR28_04782 0.65 +0.3
5,447,781 - PFR28_04782 0.65 -1.5
5,447,781 - PFR28_04782 0.65 -1.0
5,447,781 - PFR28_04782 0.65 -0.2
5,447,781 - PFR28_04782 0.65 -1.4
5,447,781 - PFR28_04782 0.65 -1.8
5,447,781 - PFR28_04782 0.65 -1.0
5,447,781 - PFR28_04782 0.65 -0.2
5,447,781 - PFR28_04782 0.65 -3.0
5,447,781 - PFR28_04782 0.65 -0.8
5,447,781 - PFR28_04782 0.65 -0.9
5,447,781 - PFR28_04782 0.65 -0.7
5,447,781 - PFR28_04782 0.65 +0.3
5,447,781 - PFR28_04782 0.65 -0.3
5,447,781 - PFR28_04782 0.65 -1.3
5,447,781 - PFR28_04782 0.65 -1.6
5,447,785 + PFR28_04782 0.65 -0.7
5,447,785 + PFR28_04782 0.65 -1.7
5,447,785 + PFR28_04782 0.65 -1.0
5,447,786 - PFR28_04782 0.66 -0.2
5,447,793 + PFR28_04782 0.67 -1.4
5,447,793 + PFR28_04782 0.67 -1.6
5,447,794 - PFR28_04782 0.67 -0.7
5,447,794 - PFR28_04782 0.67 -1.0
5,447,794 - PFR28_04782 0.67 -2.8
5,447,794 - PFR28_04782 0.67 +1.3
5,447,796 + PFR28_04782 0.67 -0.4
5,447,796 + PFR28_04782 0.67 -1.3
5,447,797 - PFR28_04782 0.67 +0.9
5,447,797 - PFR28_04782 0.67 -2.2
5,447,797 - PFR28_04782 0.67 -1.0
5,447,797 - PFR28_04782 0.67 -0.2
5,447,797 - PFR28_04782 0.67 +0.5
5,447,797 - PFR28_04782 0.67 -0.7
5,447,797 - PFR28_04782 0.67 -1.9
5,447,886 + PFR28_04782 0.80 -1.0
5,447,886 + PFR28_04782 0.80 -2.2
5,447,886 + PFR28_04782 0.80 -1.2
5,447,887 - PFR28_04782 0.80 -1.3
5,448,017 + +0.5
5,448,017 + +0.1
5,448,017 + +0.3
5,448,017 + -2.0
5,448,018 - +1.1
5,448,021 + +0.3
5,448,022 - +0.2
5,448,022 - +0.8
5,448,068 - +0.3
5,448,068 - -0.0
5,448,137 + -0.6
5,448,138 - +0.2
5,448,138 - -0.7
5,448,138 - +0.3
5,448,138 - +1.2
5,448,138 - +0.3
5,448,260 + PFR28_04783 0.11 -0.6
5,448,261 - PFR28_04783 0.11 +0.2
5,448,264 - PFR28_04783 0.12 -0.1
5,448,572 + PFR28_04783 0.27 +0.1
5,448,572 + PFR28_04783 0.27 -1.9
5,448,572 + PFR28_04783 0.27 +0.5
5,448,572 + PFR28_04783 0.27 +0.2
5,448,572 + PFR28_04783 0.27 -0.4
5,448,572 + PFR28_04783 0.27 -0.7
5,448,572 + PFR28_04783 0.27 -0.0
5,448,573 - PFR28_04783 0.27 -0.6
5,448,573 - PFR28_04783 0.27 -0.8
5,448,573 - PFR28_04783 0.27 +0.0
5,448,573 - PFR28_04783 0.27 -0.5
5,448,573 - PFR28_04783 0.27 -0.3
5,448,637 + PFR28_04783 0.31 -0.2
5,448,783 - PFR28_04783 0.38 -0.3

Or see this region's nucleotide sequence