Experiment: D-Glucose (C) 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFR28_04416 and PFR28_04417 are separated by 167 nucleotides PFR28_04417 and PFR28_04418 are separated by 83 nucleotides PFR28_04418 and PFR28_04419 are separated by 116 nucleotides PFR28_04419 and PFR28_04420 are separated by 30 nucleotides
PFR28_04416: PFR28_04416 - Acetylglutamate kinase, at 5,030,237 to 5,031,142
_04416
PFR28_04417: PFR28_04417 - Orotate phosphoribosyltransferase, at 5,031,310 to 5,031,954
_04417
PFR28_04418: PFR28_04418 - Exodeoxyribonuclease, at 5,032,038 to 5,032,817
_04418
PFR28_04419: PFR28_04419 - hypothetical protein, at 5,032,934 to 5,033,302
_04419
PFR28_04420: PFR28_04420 - Ribonuclease PH, at 5,033,333 to 5,034,055
_04420
Position (kb) 5032
5033 Strain fitness (log2 ratio) -1
0
1
2
3 at 5031.113 kb on - strand at 5031.140 kb on + strand at 5031.199 kb on + strand at 5031.199 kb on + strand at 5031.199 kb on + strand at 5031.200 kb on - strand at 5031.225 kb on + strand at 5031.243 kb on + strand at 5031.244 kb on - strand at 5031.259 kb on + strand at 5031.268 kb on - strand at 5031.311 kb on + strand at 5031.311 kb on + strand at 5031.312 kb on - strand at 5031.987 kb on - strand at 5031.991 kb on - strand at 5031.991 kb on - strand at 5031.991 kb on - strand at 5031.991 kb on - strand at 5031.991 kb on - strand at 5031.991 kb on - strand at 5031.991 kb on - strand at 5031.995 kb on - strand at 5031.995 kb on - strand at 5032.006 kb on - strand at 5032.010 kb on + strand at 5032.010 kb on + strand at 5032.037 kb on + strand at 5032.195 kb on - strand, within PFR28_04418 at 5032.249 kb on - strand, within PFR28_04418 at 5032.249 kb on - strand, within PFR28_04418 at 5032.470 kb on + strand, within PFR28_04418 at 5032.470 kb on + strand, within PFR28_04418 at 5032.470 kb on + strand, within PFR28_04418 at 5032.470 kb on + strand, within PFR28_04418 at 5032.470 kb on + strand, within PFR28_04418 at 5032.471 kb on - strand, within PFR28_04418 at 5032.471 kb on - strand, within PFR28_04418 at 5032.485 kb on + strand, within PFR28_04418 at 5032.486 kb on - strand, within PFR28_04418 at 5032.914 kb on + strand at 5032.915 kb on - strand at 5032.924 kb on + strand at 5032.925 kb on - strand at 5033.198 kb on - strand, within PFR28_04419 at 5033.275 kb on + strand at 5033.275 kb on + strand at 5033.275 kb on + strand at 5033.275 kb on + strand at 5033.276 kb on - strand at 5033.276 kb on - strand at 5033.276 kb on - strand at 5033.276 kb on - strand at 5033.345 kb on + strand at 5033.401 kb on + strand at 5033.401 kb on + strand at 5033.401 kb on + strand at 5033.401 kb on + strand at 5033.401 kb on + strand at 5033.402 kb on - strand at 5033.402 kb on - strand at 5033.402 kb on - strand at 5033.402 kb on - strand at 5033.402 kb on - strand at 5033.520 kb on + strand, within PFR28_04420 at 5033.520 kb on + strand, within PFR28_04420 at 5033.520 kb on + strand, within PFR28_04420 at 5033.521 kb on - strand, within PFR28_04420 at 5033.550 kb on + strand, within PFR28_04420 at 5033.550 kb on + strand, within PFR28_04420 at 5033.550 kb on + strand, within PFR28_04420 at 5033.550 kb on + strand, within PFR28_04420 at 5033.550 kb on + strand, within PFR28_04420 at 5033.550 kb on + strand, within PFR28_04420 at 5033.550 kb on + strand, within PFR28_04420 at 5033.550 kb on + strand, within PFR28_04420 at 5033.551 kb on - strand, within PFR28_04420 at 5033.551 kb on - strand, within PFR28_04420 at 5033.551 kb on - strand, within PFR28_04420 at 5033.551 kb on - strand, within PFR28_04420 at 5033.551 kb on - strand, within PFR28_04420 at 5033.551 kb on - strand, within PFR28_04420 at 5033.551 kb on - strand, within PFR28_04420 at 5033.551 kb on - strand, within PFR28_04420 at 5033.551 kb on - strand, within PFR28_04420 at 5033.551 kb on - strand, within PFR28_04420 at 5033.551 kb on - strand, within PFR28_04420 at 5033.551 kb on - strand, within PFR28_04420 at 5033.551 kb on - strand, within PFR28_04420 at 5033.551 kb on - strand, within PFR28_04420 at 5033.551 kb on - strand, within PFR28_04420 at 5033.715 kb on + strand, within PFR28_04420 at 5033.715 kb on + strand, within PFR28_04420 at 5033.715 kb on + strand, within PFR28_04420 at 5033.715 kb on + strand, within PFR28_04420 at 5033.715 kb on + strand, within PFR28_04420 at 5033.716 kb on - strand, within PFR28_04420 at 5033.716 kb on - strand, within PFR28_04420 at 5033.716 kb on - strand, within PFR28_04420 at 5033.716 kb on - strand, within PFR28_04420 at 5033.716 kb on - strand, within PFR28_04420 at 5033.716 kb on - strand, within PFR28_04420 at 5033.716 kb on - strand, within PFR28_04420 at 5033.716 kb on - strand, within PFR28_04420 at 5033.716 kb on - strand, within PFR28_04420
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C) 10 mM remove 5,031,113 - -0.2 5,031,140 + -0.5 5,031,199 + +0.0 5,031,199 + -0.4 5,031,199 + +0.6 5,031,200 - +2.1 5,031,225 + +0.8 5,031,243 + -0.8 5,031,244 - -0.1 5,031,259 + -0.2 5,031,268 - +0.3 5,031,311 + -0.7 5,031,311 + -0.2 5,031,312 - +1.7 5,031,987 - -0.9 5,031,991 - -0.1 5,031,991 - +0.3 5,031,991 - +0.3 5,031,991 - +0.6 5,031,991 - -1.1 5,031,991 - -0.2 5,031,991 - -0.2 5,031,995 - +1.3 5,031,995 - +1.1 5,032,006 - +0.7 5,032,010 + -0.2 5,032,010 + -0.4 5,032,037 + -0.8 5,032,195 - PFR28_04418 0.20 -1.7 5,032,249 - PFR28_04418 0.27 -0.7 5,032,249 - PFR28_04418 0.27 +0.1 5,032,470 + PFR28_04418 0.55 +0.8 5,032,470 + PFR28_04418 0.55 -1.2 5,032,470 + PFR28_04418 0.55 -1.5 5,032,470 + PFR28_04418 0.55 -1.0 5,032,470 + PFR28_04418 0.55 -0.1 5,032,471 - PFR28_04418 0.56 +0.3 5,032,471 - PFR28_04418 0.56 -1.2 5,032,485 + PFR28_04418 0.57 +2.9 5,032,486 - PFR28_04418 0.57 +0.3 5,032,914 + +0.6 5,032,915 - +0.0 5,032,924 + +0.0 5,032,925 - +0.5 5,033,198 - PFR28_04419 0.72 -0.5 5,033,275 + -0.3 5,033,275 + +0.2 5,033,275 + +0.3 5,033,275 + -0.1 5,033,276 - +0.0 5,033,276 - +0.6 5,033,276 - +0.7 5,033,276 - +0.1 5,033,345 + +2.9 5,033,401 + -0.7 5,033,401 + +0.9 5,033,401 + +0.4 5,033,401 + +1.3 5,033,401 + -0.0 5,033,402 - -0.0 5,033,402 - +0.5 5,033,402 - -0.3 5,033,402 - +0.4 5,033,402 - -0.6 5,033,520 + PFR28_04420 0.26 +0.6 5,033,520 + PFR28_04420 0.26 +0.1 5,033,520 + PFR28_04420 0.26 -1.1 5,033,521 - PFR28_04420 0.26 +0.8 5,033,550 + PFR28_04420 0.30 -0.6 5,033,550 + PFR28_04420 0.30 -0.4 5,033,550 + PFR28_04420 0.30 +0.2 5,033,550 + PFR28_04420 0.30 +1.0 5,033,550 + PFR28_04420 0.30 -0.9 5,033,550 + PFR28_04420 0.30 -0.6 5,033,550 + PFR28_04420 0.30 -0.1 5,033,550 + PFR28_04420 0.30 +0.2 5,033,551 - PFR28_04420 0.30 -0.1 5,033,551 - PFR28_04420 0.30 +1.3 5,033,551 - PFR28_04420 0.30 +1.3 5,033,551 - PFR28_04420 0.30 -0.6 5,033,551 - PFR28_04420 0.30 +0.6 5,033,551 - PFR28_04420 0.30 +1.3 5,033,551 - PFR28_04420 0.30 +0.9 5,033,551 - PFR28_04420 0.30 -1.7 5,033,551 - PFR28_04420 0.30 -0.1 5,033,551 - PFR28_04420 0.30 +0.3 5,033,551 - PFR28_04420 0.30 -0.3 5,033,551 - PFR28_04420 0.30 +0.9 5,033,551 - PFR28_04420 0.30 -0.2 5,033,551 - PFR28_04420 0.30 +0.1 5,033,551 - PFR28_04420 0.30 -0.4 5,033,715 + PFR28_04420 0.53 +0.6 5,033,715 + PFR28_04420 0.53 +0.3 5,033,715 + PFR28_04420 0.53 +0.0 5,033,715 + PFR28_04420 0.53 +1.3 5,033,715 + PFR28_04420 0.53 +0.4 5,033,716 - PFR28_04420 0.53 -0.2 5,033,716 - PFR28_04420 0.53 -0.7 5,033,716 - PFR28_04420 0.53 +0.4 5,033,716 - PFR28_04420 0.53 +0.2 5,033,716 - PFR28_04420 0.53 +0.3 5,033,716 - PFR28_04420 0.53 -0.4 5,033,716 - PFR28_04420 0.53 +0.1 5,033,716 - PFR28_04420 0.53 -0.7 5,033,716 - PFR28_04420 0.53 -1.0
Or see this region's nucleotide sequence