Strain Fitness in Pseudomonas sp. RS175 around PFR28_04345

Experiment: D-Glucose (C) 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_04344 and PFR28_04345 are separated by 222 nucleotidesPFR28_04345 and PFR28_04346 are separated by 17 nucleotides PFR28_04344: PFR28_04344 - Exopolyphosphatase, at 4,952,029 to 4,953,531 _04344 PFR28_04345: PFR28_04345 - Polyphosphate kinase, at 4,953,754 to 4,955,976 _04345 PFR28_04346: PFR28_04346 - Delta-aminolevulinic acid dehydratase, at 4,955,994 to 4,957,007 _04346 Position (kb) 4953 4954 4955 4956Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 4952.935 kb on + strand, within PFR28_04344at 4952.935 kb on + strand, within PFR28_04344at 4952.935 kb on + strand, within PFR28_04344at 4952.935 kb on + strand, within PFR28_04344at 4952.936 kb on - strand, within PFR28_04344at 4953.160 kb on + strand, within PFR28_04344at 4953.161 kb on - strand, within PFR28_04344at 4953.161 kb on - strand, within PFR28_04344at 4953.270 kb on + strand, within PFR28_04344at 4953.627 kb on + strandat 4953.628 kb on - strandat 4953.628 kb on - strandat 4953.628 kb on - strandat 4953.719 kb on + strandat 4953.720 kb on - strandat 4953.720 kb on - strandat 4953.720 kb on - strandat 4953.849 kb on - strandat 4953.849 kb on - strandat 4953.849 kb on - strandat 4953.882 kb on + strandat 4953.883 kb on - strandat 4953.896 kb on + strandat 4953.896 kb on + strandat 4953.896 kb on + strandat 4954.037 kb on + strand, within PFR28_04345at 4954.037 kb on + strand, within PFR28_04345at 4954.037 kb on + strand, within PFR28_04345at 4954.037 kb on + strand, within PFR28_04345at 4954.037 kb on + strand, within PFR28_04345at 4954.038 kb on - strand, within PFR28_04345at 4954.038 kb on - strand, within PFR28_04345at 4954.038 kb on - strand, within PFR28_04345at 4954.038 kb on - strand, within PFR28_04345at 4954.179 kb on - strand, within PFR28_04345at 4954.179 kb on - strand, within PFR28_04345at 4954.179 kb on - strand, within PFR28_04345at 4954.179 kb on - strand, within PFR28_04345at 4954.179 kb on - strand, within PFR28_04345at 4954.179 kb on - strand, within PFR28_04345at 4954.230 kb on + strand, within PFR28_04345at 4954.230 kb on + strand, within PFR28_04345at 4954.231 kb on - strand, within PFR28_04345at 4954.415 kb on + strand, within PFR28_04345at 4954.415 kb on + strand, within PFR28_04345at 4954.424 kb on + strand, within PFR28_04345at 4954.448 kb on + strand, within PFR28_04345at 4954.448 kb on + strand, within PFR28_04345at 4954.449 kb on - strand, within PFR28_04345at 4954.449 kb on - strand, within PFR28_04345at 4954.449 kb on - strand, within PFR28_04345at 4954.506 kb on + strand, within PFR28_04345at 4954.547 kb on + strand, within PFR28_04345at 4954.547 kb on + strand, within PFR28_04345at 4954.706 kb on + strand, within PFR28_04345at 4954.707 kb on - strand, within PFR28_04345at 4954.776 kb on + strand, within PFR28_04345at 4954.776 kb on + strand, within PFR28_04345at 4954.776 kb on + strand, within PFR28_04345at 4954.777 kb on - strand, within PFR28_04345at 4954.883 kb on + strand, within PFR28_04345at 4954.958 kb on + strand, within PFR28_04345at 4954.997 kb on + strand, within PFR28_04345at 4954.998 kb on - strand, within PFR28_04345at 4955.154 kb on - strand, within PFR28_04345at 4955.221 kb on + strand, within PFR28_04345at 4955.221 kb on + strand, within PFR28_04345at 4955.221 kb on + strand, within PFR28_04345at 4955.221 kb on + strand, within PFR28_04345at 4955.221 kb on + strand, within PFR28_04345at 4955.221 kb on + strand, within PFR28_04345at 4955.221 kb on + strand, within PFR28_04345at 4955.221 kb on + strand, within PFR28_04345at 4955.221 kb on + strand, within PFR28_04345at 4955.221 kb on + strand, within PFR28_04345at 4955.221 kb on + strand, within PFR28_04345at 4955.222 kb on - strand, within PFR28_04345at 4955.222 kb on - strand, within PFR28_04345at 4955.222 kb on - strand, within PFR28_04345at 4955.222 kb on - strand, within PFR28_04345at 4955.222 kb on - strand, within PFR28_04345at 4955.222 kb on - strand, within PFR28_04345at 4955.222 kb on - strand, within PFR28_04345at 4955.222 kb on - strand, within PFR28_04345at 4955.222 kb on - strand, within PFR28_04345at 4955.225 kb on + strand, within PFR28_04345at 4955.225 kb on + strand, within PFR28_04345at 4955.225 kb on + strand, within PFR28_04345at 4955.225 kb on + strand, within PFR28_04345at 4955.225 kb on + strand, within PFR28_04345at 4955.225 kb on + strand, within PFR28_04345at 4955.225 kb on + strand, within PFR28_04345at 4955.225 kb on + strand, within PFR28_04345at 4955.225 kb on + strand, within PFR28_04345at 4955.225 kb on + strand, within PFR28_04345at 4955.225 kb on + strand, within PFR28_04345at 4955.225 kb on + strand, within PFR28_04345at 4955.225 kb on + strand, within PFR28_04345at 4955.225 kb on + strand, within PFR28_04345at 4955.225 kb on + strand, within PFR28_04345at 4955.225 kb on + strand, within PFR28_04345at 4955.226 kb on - strand, within PFR28_04345at 4955.226 kb on - strand, within PFR28_04345at 4955.226 kb on - strand, within PFR28_04345at 4955.226 kb on - strand, within PFR28_04345at 4955.226 kb on - strand, within PFR28_04345at 4955.226 kb on - strand, within PFR28_04345at 4955.226 kb on - strand, within PFR28_04345at 4955.226 kb on - strand, within PFR28_04345at 4955.226 kb on - strand, within PFR28_04345at 4955.226 kb on - strand, within PFR28_04345at 4955.738 kb on + strand, within PFR28_04345at 4955.739 kb on - strand, within PFR28_04345at 4955.739 kb on - strand, within PFR28_04345at 4955.739 kb on - strand, within PFR28_04345at 4955.807 kb on + strandat 4955.807 kb on + strandat 4955.807 kb on + strandat 4955.807 kb on + strandat 4955.807 kb on + strandat 4955.807 kb on + strandat 4955.807 kb on + strandat 4955.807 kb on + strandat 4955.807 kb on + strandat 4955.807 kb on + strandat 4955.807 kb on + strandat 4955.807 kb on + strandat 4955.808 kb on - strandat 4955.808 kb on - strandat 4955.808 kb on - strandat 4955.808 kb on - strandat 4955.808 kb on - strandat 4955.808 kb on - strandat 4955.995 kb on + strandat 4955.995 kb on + strandat 4955.996 kb on - strandat 4955.996 kb on - strandat 4956.009 kb on + strandat 4956.010 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C) 10 mM
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4,952,935 + PFR28_04344 0.60 -0.6
4,952,935 + PFR28_04344 0.60 -1.0
4,952,935 + PFR28_04344 0.60 +1.4
4,952,935 + PFR28_04344 0.60 -0.2
4,952,936 - PFR28_04344 0.60 -2.0
4,953,160 + PFR28_04344 0.75 -0.5
4,953,161 - PFR28_04344 0.75 -0.3
4,953,161 - PFR28_04344 0.75 -0.5
4,953,270 + PFR28_04344 0.83 -2.6
4,953,627 + +1.1
4,953,628 - -0.1
4,953,628 - +0.1
4,953,628 - +0.2
4,953,719 + +2.4
4,953,720 - +0.8
4,953,720 - +0.4
4,953,720 - -0.2
4,953,849 - -1.2
4,953,849 - -0.8
4,953,849 - -0.5
4,953,882 + -0.4
4,953,883 - -0.7
4,953,896 + -0.7
4,953,896 + -0.8
4,953,896 + -0.8
4,954,037 + PFR28_04345 0.13 -0.2
4,954,037 + PFR28_04345 0.13 -1.7
4,954,037 + PFR28_04345 0.13 -0.3
4,954,037 + PFR28_04345 0.13 -0.7
4,954,037 + PFR28_04345 0.13 -1.9
4,954,038 - PFR28_04345 0.13 -0.8
4,954,038 - PFR28_04345 0.13 -0.6
4,954,038 - PFR28_04345 0.13 -0.7
4,954,038 - PFR28_04345 0.13 -1.3
4,954,179 - PFR28_04345 0.19 -0.9
4,954,179 - PFR28_04345 0.19 -0.8
4,954,179 - PFR28_04345 0.19 -1.1
4,954,179 - PFR28_04345 0.19 -1.0
4,954,179 - PFR28_04345 0.19 -0.8
4,954,179 - PFR28_04345 0.19 -0.8
4,954,230 + PFR28_04345 0.21 -0.6
4,954,230 + PFR28_04345 0.21 -1.5
4,954,231 - PFR28_04345 0.21 -0.9
4,954,415 + PFR28_04345 0.30 -0.8
4,954,415 + PFR28_04345 0.30 -0.8
4,954,424 + PFR28_04345 0.30 -0.1
4,954,448 + PFR28_04345 0.31 -0.3
4,954,448 + PFR28_04345 0.31 -0.9
4,954,449 - PFR28_04345 0.31 -1.3
4,954,449 - PFR28_04345 0.31 -0.3
4,954,449 - PFR28_04345 0.31 -2.0
4,954,506 + PFR28_04345 0.34 -0.4
4,954,547 + PFR28_04345 0.36 -0.6
4,954,547 + PFR28_04345 0.36 -2.5
4,954,706 + PFR28_04345 0.43 -0.5
4,954,707 - PFR28_04345 0.43 -0.4
4,954,776 + PFR28_04345 0.46 +0.4
4,954,776 + PFR28_04345 0.46 -0.5
4,954,776 + PFR28_04345 0.46 -1.3
4,954,777 - PFR28_04345 0.46 -1.1
4,954,883 + PFR28_04345 0.51 -0.8
4,954,958 + PFR28_04345 0.54 -1.4
4,954,997 + PFR28_04345 0.56 +0.2
4,954,998 - PFR28_04345 0.56 -2.0
4,955,154 - PFR28_04345 0.63 -1.4
4,955,221 + PFR28_04345 0.66 -3.9
4,955,221 + PFR28_04345 0.66 -0.4
4,955,221 + PFR28_04345 0.66 -0.7
4,955,221 + PFR28_04345 0.66 -1.1
4,955,221 + PFR28_04345 0.66 -0.4
4,955,221 + PFR28_04345 0.66 -0.4
4,955,221 + PFR28_04345 0.66 -1.9
4,955,221 + PFR28_04345 0.66 -0.5
4,955,221 + PFR28_04345 0.66 -0.6
4,955,221 + PFR28_04345 0.66 -1.7
4,955,221 + PFR28_04345 0.66 -1.0
4,955,222 - PFR28_04345 0.66 -0.9
4,955,222 - PFR28_04345 0.66 -1.2
4,955,222 - PFR28_04345 0.66 -0.9
4,955,222 - PFR28_04345 0.66 -1.5
4,955,222 - PFR28_04345 0.66 -0.6
4,955,222 - PFR28_04345 0.66 -1.7
4,955,222 - PFR28_04345 0.66 +0.3
4,955,222 - PFR28_04345 0.66 -0.8
4,955,222 - PFR28_04345 0.66 -1.0
4,955,225 + PFR28_04345 0.66 -0.8
4,955,225 + PFR28_04345 0.66 -0.6
4,955,225 + PFR28_04345 0.66 +1.4
4,955,225 + PFR28_04345 0.66 -0.9
4,955,225 + PFR28_04345 0.66 -0.2
4,955,225 + PFR28_04345 0.66 -0.1
4,955,225 + PFR28_04345 0.66 -1.0
4,955,225 + PFR28_04345 0.66 -0.9
4,955,225 + PFR28_04345 0.66 -0.0
4,955,225 + PFR28_04345 0.66 -1.0
4,955,225 + PFR28_04345 0.66 -0.7
4,955,225 + PFR28_04345 0.66 -2.3
4,955,225 + PFR28_04345 0.66 -1.3
4,955,225 + PFR28_04345 0.66 -0.7
4,955,225 + PFR28_04345 0.66 -0.7
4,955,225 + PFR28_04345 0.66 -0.4
4,955,226 - PFR28_04345 0.66 -1.3
4,955,226 - PFR28_04345 0.66 -0.2
4,955,226 - PFR28_04345 0.66 -0.5
4,955,226 - PFR28_04345 0.66 -0.9
4,955,226 - PFR28_04345 0.66 -0.8
4,955,226 - PFR28_04345 0.66 -0.8
4,955,226 - PFR28_04345 0.66 -1.6
4,955,226 - PFR28_04345 0.66 -1.2
4,955,226 - PFR28_04345 0.66 -1.9
4,955,226 - PFR28_04345 0.66 -1.8
4,955,738 + PFR28_04345 0.89 -0.6
4,955,739 - PFR28_04345 0.89 -2.2
4,955,739 - PFR28_04345 0.89 +0.9
4,955,739 - PFR28_04345 0.89 -0.2
4,955,807 + -0.5
4,955,807 + +0.2
4,955,807 + -0.3
4,955,807 + -0.3
4,955,807 + -0.3
4,955,807 + -0.5
4,955,807 + -1.0
4,955,807 + -0.1
4,955,807 + +0.5
4,955,807 + +0.1
4,955,807 + -0.8
4,955,807 + -1.2
4,955,808 - -1.1
4,955,808 - -1.1
4,955,808 - -0.8
4,955,808 - -1.2
4,955,808 - -0.8
4,955,808 - -1.3
4,955,995 + -0.0
4,955,995 + -0.4
4,955,996 - -0.0
4,955,996 - +0.9
4,956,009 + +0.9
4,956,010 - +0.2

Or see this region's nucleotide sequence