Strain Fitness in Pseudomonas sp. RS175 around PFR28_04246

Experiment: D-Glucose (C) 10 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Glucose (C) 10 mM
4,850,430	+		PFR28_04245	0.43	-4.1
4,850,431	-		PFR28_04245	0.43	-3.3
4,850,632	+		PFR28_04245	0.61	-2.6
4,850,632	+		PFR28_04245	0.61	-2.1
4,850,632	+		PFR28_04245	0.61	-2.2
4,850,632	+		PFR28_04245	0.61	-2.0
4,850,633	-		PFR28_04245	0.61	-2.5
4,850,633	-		PFR28_04245	0.61	-3.5
4,850,633	-		PFR28_04245	0.61	+1.3
4,850,633	-		PFR28_04245	0.61	-2.9
4,850,639	+		PFR28_04245	0.61	-0.7
4,850,639	+		PFR28_04245	0.61	-4.2
4,850,639	+		PFR28_04245	0.61	-4.6
4,850,639	+		PFR28_04245	0.61	-4.2
4,850,639	+		PFR28_04245	0.61	-4.3
4,850,639	+		PFR28_04245	0.61	-4.4
4,850,639	+		PFR28_04245	0.61	-2.9
4,850,639	+		PFR28_04245	0.61	-1.0
4,850,639	+		PFR28_04245	0.61	-3.4
4,850,640	-		PFR28_04245	0.61	-4.2
4,850,640	-		PFR28_04245	0.61	-2.7
4,850,640	-		PFR28_04245	0.61	-2.0
4,850,640	-		PFR28_04245	0.61	-3.2
4,850,640	-		PFR28_04245	0.61	-3.1
4,850,640	-		PFR28_04245	0.61	-4.1
4,850,640	-		PFR28_04245	0.61	-3.1
4,850,640	-		PFR28_04245	0.61	-3.2
4,850,640	-		PFR28_04245	0.61	-3.8
4,850,640	-		PFR28_04245	0.61	-2.4
4,850,640	-		PFR28_04245	0.61	-2.4
4,850,702	+		PFR28_04245	0.67	-4.7
4,850,703	-		PFR28_04245	0.67	-2.6
4,850,703	-		PFR28_04245	0.67	-2.9
4,850,703	-		PFR28_04245	0.67	-2.8
4,850,703	-		PFR28_04245	0.67	-2.6
4,850,703	-		PFR28_04245	0.67	-2.7
4,850,703	-		PFR28_04245	0.67	-3.2
4,850,703	-		PFR28_04245	0.67	-4.7
4,850,738	+		PFR28_04245	0.70	-1.5
4,850,738	+		PFR28_04245	0.70	-2.6
4,850,789	+		PFR28_04245	0.74	-4.2
4,850,789	+		PFR28_04245	0.74	-4.0
4,850,789	+		PFR28_04245	0.74	-3.5
4,850,789	+		PFR28_04245	0.74	-1.7
4,850,789	+		PFR28_04245	0.74	-3.7
4,850,789	+		PFR28_04245	0.74	-2.5
4,850,790	-		PFR28_04245	0.75	-2.8
4,850,790	-		PFR28_04245	0.75	-2.9
4,850,790	-		PFR28_04245	0.75	-2.8
4,850,790	-		PFR28_04245	0.75	-3.1
4,850,790	-		PFR28_04245	0.75	-2.0
4,850,790	-		PFR28_04245	0.75	-1.8
4,850,816	+		PFR28_04245	0.77	-1.3
4,850,816	+		PFR28_04245	0.77	-2.4
4,850,817	-		PFR28_04245	0.77	-3.9
4,850,817	-		PFR28_04245	0.77	-3.1
4,850,817	-		PFR28_04245	0.77	-1.0
4,850,978	+				-3.7
4,850,979	-				-3.3
4,851,035	+				-1.8
4,851,036	-				-1.8
4,851,056	+				-2.7
4,851,056	+				-3.6
4,851,056	+				-2.9
4,851,056	+				-2.7
4,851,056	+				-4.1
4,851,056	+				-4.1
4,851,056	+				-3.1
4,851,056	+				-3.5
4,851,056	+				-4.6
4,851,056	+				-1.0
4,851,056	+				-2.0
4,851,056	+				-3.6
4,851,056	+				-2.1
4,851,056	+				-1.7
4,851,056	+				-2.9
4,851,056	+				-2.2
4,851,056	+				-2.2
4,851,056	+				-3.9
4,851,056	+				-1.0
4,851,057	-				-3.3
4,851,057	-				-0.2
4,851,057	-				-3.7
4,851,057	-				-1.8
4,851,057	-				-4.9
4,851,057	-				-3.9
4,851,057	-				-3.8
4,851,057	-				-1.3
4,851,057	-				-2.1
4,851,057	-				-3.5
4,851,057	-				-2.4
4,851,057	-				-4.3
4,851,058	+				-3.9
4,851,058	+				-2.5
4,851,058	+				-1.5
4,851,058	+				-2.3
4,851,058	+				-3.7
4,851,058	+				-0.2
4,851,058	+				-3.2
4,851,059	-				-2.9
4,851,059	-				-2.8
4,851,059	-				-3.6
4,851,059	-				-4.3
4,851,059	-				-3.9
4,851,059	-				-4.7
4,851,059	-				-4.5
4,851,059	-				-2.9
4,851,067	+				-3.8
4,851,067	+				-4.5
4,851,068	-				-3.7
4,851,068	-				-2.6
4,851,070	+				+0.4
4,851,070	+				-1.4
4,851,070	+				-0.1
4,851,070	+				+1.9
4,851,070	+				+0.7
4,851,071	-				-2.1
4,851,071	-				-2.1
4,851,071	-				-2.4
4,851,071	-				-2.0
4,851,071	-				-3.0
4,851,071	-				-4.1
4,851,447	+		PFR28_04246	0.58	-4.7
4,851,447	+		PFR28_04246	0.58	-4.9
4,851,448	-		PFR28_04246	0.58	-3.2
4,851,492	+		PFR28_04246	0.65	-2.8
4,851,492	+		PFR28_04246	0.65	-2.7
4,851,492	+		PFR28_04246	0.65	-2.1
4,851,492	+		PFR28_04246	0.65	-3.6
4,851,492	+		PFR28_04246	0.65	-2.2
4,851,492	+		PFR28_04246	0.65	-3.8
4,851,492	+		PFR28_04246	0.65	-2.1
4,851,493	-		PFR28_04246	0.65	-4.0
4,851,501	+		PFR28_04246	0.67	-3.1
4,851,501	+		PFR28_04246	0.67	-4.5
4,851,501	+		PFR28_04246	0.67	-4.8
4,851,501	+		PFR28_04246	0.67	-2.8
4,851,501	+		PFR28_04246	0.67	-1.8
4,851,502	-		PFR28_04246	0.67	-2.9
4,851,502	-		PFR28_04246	0.67	-2.2
4,851,502	-		PFR28_04246	0.67	-2.0
4,851,628	+		PFR28_04246	0.87	-2.4
4,851,628	+		PFR28_04246	0.87	-3.8
4,851,628	+		PFR28_04246	0.87	-1.2
4,851,628	+		PFR28_04246	0.87	-0.7
4,851,628	+		PFR28_04246	0.87	-3.2
4,851,629	-		PFR28_04246	0.87	-3.9
4,851,629	-		PFR28_04246	0.87	-3.8
4,851,629	-		PFR28_04246	0.87	-4.5
4,851,629	-		PFR28_04246	0.87	-3.4
4,851,629	-		PFR28_04246	0.87	-3.3
4,851,629	-		PFR28_04246	0.87	-4.1
4,851,629	-		PFR28_04246	0.87	-1.6
4,851,629	-		PFR28_04246	0.87	-3.4
4,851,629	-		PFR28_04246	0.87	-3.6
4,851,635	+		PFR28_04246	0.88	-3.2
4,851,635	+		PFR28_04246	0.88	-3.6
4,851,643	+		PFR28_04246	0.90	-2.2
4,851,643	+		PFR28_04246	0.90	-2.5
4,851,652	+				-1.1
4,851,652	+				-2.5
4,851,652	+				-2.5
4,851,652	+				-4.0
4,851,652	+				-2.4
4,851,653	-				-3.1
4,851,653	-				-3.1
4,851,653	-				-3.2
4,851,660	+				-1.6
4,851,660	+				-1.5
4,851,660	+				-3.1
4,851,661	-				-2.2
4,851,661	-				+1.3
4,851,704	-				-4.0
4,851,718	+				-0.2
4,851,718	+				-0.7
4,851,743	+				+0.6
4,851,743	+				+0.4
4,851,744	-				+1.9
4,851,744	-				-0.7
4,851,844	+		PFR28_04247	0.26	-0.3
4,851,844	+		PFR28_04247	0.26	+0.1
4,851,844	+		PFR28_04247	0.26	+0.0
4,851,844	+		PFR28_04247	0.26	+0.2
4,851,844	+		PFR28_04247	0.26	+0.1
4,851,845	-		PFR28_04247	0.26	+0.8
4,851,845	-		PFR28_04247	0.26	-0.3
4,851,845	-		PFR28_04247	0.26	+0.8
4,851,845	-		PFR28_04247	0.26	-0.1
4,851,845	-		PFR28_04247	0.26	-0.7
4,852,048	+		PFR28_04247	0.72	+0.4
4,852,048	+		PFR28_04247	0.72	+0.3
4,852,048	+		PFR28_04247	0.72	-2.0
4,852,048	+		PFR28_04247	0.72	+0.5
4,852,049	-		PFR28_04247	0.73	-0.6
4,852,049	-		PFR28_04247	0.73	-0.1
4,852,049	-		PFR28_04247	0.73	-0.2
4,852,051	+		PFR28_04247	0.73	+1.9
4,852,051	+		PFR28_04247	0.73	+0.3
4,852,051	+		PFR28_04247	0.73	+0.1
4,852,051	+		PFR28_04247	0.73	-0.2
4,852,051	+		PFR28_04247	0.73	-0.3
4,852,052	-		PFR28_04247	0.73	+1.2
4,852,052	-		PFR28_04247	0.73	-1.4
4,852,052	-		PFR28_04247	0.73	+0.6
4,852,052	-		PFR28_04247	0.73	+0.1
4,852,070	+		PFR28_04247	0.77	+0.4
4,852,419	+		PFR28_04248	0.43	-0.7
4,852,419	+		PFR28_04248	0.43	+1.0
4,852,419	+		PFR28_04248	0.43	+0.6
4,852,419	+		PFR28_04248	0.43	-0.6
4,852,419	+		PFR28_04248	0.43	-0.7
4,852,419	+		PFR28_04248	0.43	-0.0
4,852,419	+		PFR28_04248	0.43	+1.2
4,852,420	-		PFR28_04248	0.43	-2.0
4,852,420	-		PFR28_04248	0.43	-0.6
4,852,431	+		PFR28_04248	0.45	-0.5
4,852,431	+		PFR28_04248	0.45	+0.3
4,852,432	-		PFR28_04248	0.45	-0.8
4,852,432	-		PFR28_04248	0.45	+0.3
4,852,492	+		PFR28_04248	0.55	+1.1
4,852,492	+		PFR28_04248	0.55	+1.0
4,852,493	-		PFR28_04248	0.55	-0.4
4,852,493	-		PFR28_04248	0.55	-0.5
4,852,493	-		PFR28_04248	0.55	-0.2
4,852,493	-		PFR28_04248	0.55	-1.5