Strain Fitness in Pseudomonas sp. RS175 around PFR28_04100

Experiment: D-Glucose (C) 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_04098 and PFR28_04099 are separated by 118 nucleotidesPFR28_04099 and PFR28_04100 overlap by 4 nucleotidesPFR28_04100 and PFR28_04101 overlap by 8 nucleotidesPFR28_04101 and PFR28_04102 overlap by 8 nucleotides PFR28_04098: PFR28_04098 - hypothetical protein, at 4,684,939 to 4,685,235 _04098 PFR28_04099: PFR28_04099 - ATP-dependent dethiobiotin synthetase BioD 1, at 4,685,354 to 4,686,034 _04099 PFR28_04100: PFR28_04100 - Malonyl-[acyl-carrier protein] O-methyltransferase, at 4,686,031 to 4,686,840 _04100 PFR28_04101: PFR28_04101 - Pimeloyl-[acyl-carrier protein] methyl ester esterase, at 4,686,833 to 4,687,564 _04101 PFR28_04102: PFR28_04102 - 8-amino-7-oxononanoate synthase, at 4,687,557 to 4,688,735 _04102 Position (kb) 4686 4687Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 4685.098 kb on + strand, within PFR28_04098at 4685.098 kb on + strand, within PFR28_04098at 4685.098 kb on + strand, within PFR28_04098at 4685.098 kb on + strand, within PFR28_04098at 4685.098 kb on + strand, within PFR28_04098at 4685.098 kb on + strand, within PFR28_04098at 4685.098 kb on + strand, within PFR28_04098at 4685.099 kb on - strand, within PFR28_04098at 4685.099 kb on - strand, within PFR28_04098at 4685.099 kb on - strand, within PFR28_04098at 4685.099 kb on - strand, within PFR28_04098at 4685.099 kb on - strand, within PFR28_04098at 4685.099 kb on - strand, within PFR28_04098at 4685.099 kb on - strand, within PFR28_04098at 4685.099 kb on - strand, within PFR28_04098at 4685.099 kb on - strand, within PFR28_04098at 4685.136 kb on + strand, within PFR28_04098at 4685.137 kb on - strand, within PFR28_04098at 4685.137 kb on - strand, within PFR28_04098at 4685.137 kb on - strand, within PFR28_04098at 4685.137 kb on - strand, within PFR28_04098at 4685.190 kb on + strand, within PFR28_04098at 4685.190 kb on + strand, within PFR28_04098at 4685.207 kb on + strandat 4685.207 kb on + strandat 4685.218 kb on - strandat 4685.270 kb on + strandat 4685.270 kb on + strandat 4685.270 kb on + strandat 4685.270 kb on + strandat 4685.271 kb on - strandat 4686.021 kb on + strandat 4686.021 kb on + strandat 4686.022 kb on - strandat 4686.022 kb on - strandat 4686.022 kb on - strandat 4686.022 kb on - strandat 4686.022 kb on - strandat 4686.057 kb on - strandat 4686.057 kb on - strandat 4686.057 kb on - strandat 4686.068 kb on + strandat 4686.068 kb on + strandat 4686.068 kb on + strandat 4686.068 kb on + strandat 4686.069 kb on - strandat 4686.107 kb on + strandat 4686.108 kb on - strandat 4686.108 kb on - strandat 4686.232 kb on + strand, within PFR28_04100at 4686.232 kb on + strand, within PFR28_04100at 4686.232 kb on + strand, within PFR28_04100at 4686.232 kb on + strand, within PFR28_04100at 4686.232 kb on + strand, within PFR28_04100at 4686.232 kb on + strand, within PFR28_04100at 4686.232 kb on + strand, within PFR28_04100at 4686.232 kb on + strand, within PFR28_04100at 4686.232 kb on + strand, within PFR28_04100at 4686.232 kb on + strand, within PFR28_04100at 4686.233 kb on - strand, within PFR28_04100at 4686.233 kb on - strand, within PFR28_04100at 4686.233 kb on - strand, within PFR28_04100at 4686.233 kb on - strand, within PFR28_04100at 4686.233 kb on - strand, within PFR28_04100at 4686.233 kb on - strand, within PFR28_04100at 4686.233 kb on - strand, within PFR28_04100at 4686.233 kb on - strand, within PFR28_04100at 4686.233 kb on - strand, within PFR28_04100at 4686.260 kb on - strand, within PFR28_04100at 4686.260 kb on - strand, within PFR28_04100at 4686.543 kb on - strand, within PFR28_04100at 4686.580 kb on - strand, within PFR28_04100at 4686.648 kb on - strand, within PFR28_04100at 4686.690 kb on + strand, within PFR28_04100at 4686.690 kb on + strand, within PFR28_04100at 4686.690 kb on + strand, within PFR28_04100at 4686.690 kb on + strand, within PFR28_04100at 4686.690 kb on + strand, within PFR28_04100at 4686.690 kb on + strand, within PFR28_04100at 4686.690 kb on + strand, within PFR28_04100at 4686.690 kb on + strand, within PFR28_04100at 4686.690 kb on + strand, within PFR28_04100at 4686.690 kb on + strand, within PFR28_04100at 4686.690 kb on + strand, within PFR28_04100at 4686.690 kb on + strand, within PFR28_04100at 4686.690 kb on + strand, within PFR28_04100at 4686.690 kb on + strand, within PFR28_04100at 4686.690 kb on + strand, within PFR28_04100at 4686.691 kb on - strand, within PFR28_04100at 4686.691 kb on - strand, within PFR28_04100at 4686.691 kb on - strand, within PFR28_04100at 4686.691 kb on - strand, within PFR28_04100at 4686.691 kb on - strand, within PFR28_04100at 4686.691 kb on - strand, within PFR28_04100at 4686.691 kb on - strand, within PFR28_04100at 4686.691 kb on - strand, within PFR28_04100at 4686.691 kb on - strand, within PFR28_04100at 4686.691 kb on - strand, within PFR28_04100at 4686.691 kb on - strand, within PFR28_04100at 4686.691 kb on - strand, within PFR28_04100at 4686.691 kb on - strand, within PFR28_04100at 4686.691 kb on - strand, within PFR28_04100at 4686.691 kb on - strand, within PFR28_04100at 4686.752 kb on + strand, within PFR28_04100at 4686.753 kb on - strand, within PFR28_04100at 4686.753 kb on - strand, within PFR28_04100at 4686.983 kb on + strand, within PFR28_04101at 4687.124 kb on + strand, within PFR28_04101at 4687.617 kb on + strandat 4687.617 kb on + strandat 4687.617 kb on + strandat 4687.617 kb on + strandat 4687.617 kb on + strandat 4687.617 kb on + strandat 4687.618 kb on - strandat 4687.618 kb on - strandat 4687.618 kb on - strandat 4687.618 kb on - strandat 4687.618 kb on - strandat 4687.618 kb on - strandat 4687.618 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C) 10 mM
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4,685,098 + PFR28_04098 0.54 +0.2
4,685,098 + PFR28_04098 0.54 +0.8
4,685,098 + PFR28_04098 0.54 +0.6
4,685,098 + PFR28_04098 0.54 +0.2
4,685,098 + PFR28_04098 0.54 -0.4
4,685,098 + PFR28_04098 0.54 +0.1
4,685,098 + PFR28_04098 0.54 -0.8
4,685,099 - PFR28_04098 0.54 -0.4
4,685,099 - PFR28_04098 0.54 -1.4
4,685,099 - PFR28_04098 0.54 +0.3
4,685,099 - PFR28_04098 0.54 -0.4
4,685,099 - PFR28_04098 0.54 +0.0
4,685,099 - PFR28_04098 0.54 -0.0
4,685,099 - PFR28_04098 0.54 +0.1
4,685,099 - PFR28_04098 0.54 +0.4
4,685,099 - PFR28_04098 0.54 +0.6
4,685,136 + PFR28_04098 0.66 +0.1
4,685,137 - PFR28_04098 0.67 +0.5
4,685,137 - PFR28_04098 0.67 -0.3
4,685,137 - PFR28_04098 0.67 -0.1
4,685,137 - PFR28_04098 0.67 +0.1
4,685,190 + PFR28_04098 0.85 +0.9
4,685,190 + PFR28_04098 0.85 +1.2
4,685,207 + -0.2
4,685,207 + -0.4
4,685,218 - +0.8
4,685,270 + +0.3
4,685,270 + +0.5
4,685,270 + +0.6
4,685,270 + +1.1
4,685,271 - +1.0
4,686,021 + -1.9
4,686,021 + -1.3
4,686,022 - -0.1
4,686,022 - +0.6
4,686,022 - -0.2
4,686,022 - +0.2
4,686,022 - -0.9
4,686,057 - -0.7
4,686,057 - -2.0
4,686,057 - -1.0
4,686,068 + -1.3
4,686,068 + -0.7
4,686,068 + -1.9
4,686,068 + -0.8
4,686,069 - -0.9
4,686,107 + -1.2
4,686,108 - +0.3
4,686,108 - -2.8
4,686,232 + PFR28_04100 0.25 -1.5
4,686,232 + PFR28_04100 0.25 -0.3
4,686,232 + PFR28_04100 0.25 -2.3
4,686,232 + PFR28_04100 0.25 +0.5
4,686,232 + PFR28_04100 0.25 -1.0
4,686,232 + PFR28_04100 0.25 -0.3
4,686,232 + PFR28_04100 0.25 -0.7
4,686,232 + PFR28_04100 0.25 -2.0
4,686,232 + PFR28_04100 0.25 -1.3
4,686,232 + PFR28_04100 0.25 +0.7
4,686,233 - PFR28_04100 0.25 +1.0
4,686,233 - PFR28_04100 0.25 -1.7
4,686,233 - PFR28_04100 0.25 -2.0
4,686,233 - PFR28_04100 0.25 -2.0
4,686,233 - PFR28_04100 0.25 -1.0
4,686,233 - PFR28_04100 0.25 +2.3
4,686,233 - PFR28_04100 0.25 -1.0
4,686,233 - PFR28_04100 0.25 -1.9
4,686,233 - PFR28_04100 0.25 -0.3
4,686,260 - PFR28_04100 0.28 -0.7
4,686,260 - PFR28_04100 0.28 -2.0
4,686,543 - PFR28_04100 0.63 -2.4
4,686,580 - PFR28_04100 0.68 -0.9
4,686,648 - PFR28_04100 0.76 -2.9
4,686,690 + PFR28_04100 0.81 -0.7
4,686,690 + PFR28_04100 0.81 -2.5
4,686,690 + PFR28_04100 0.81 -1.3
4,686,690 + PFR28_04100 0.81 -2.2
4,686,690 + PFR28_04100 0.81 -2.2
4,686,690 + PFR28_04100 0.81 -3.8
4,686,690 + PFR28_04100 0.81 -0.5
4,686,690 + PFR28_04100 0.81 -1.7
4,686,690 + PFR28_04100 0.81 +0.3
4,686,690 + PFR28_04100 0.81 -2.0
4,686,690 + PFR28_04100 0.81 -2.3
4,686,690 + PFR28_04100 0.81 -1.6
4,686,690 + PFR28_04100 0.81 -0.4
4,686,690 + PFR28_04100 0.81 -0.3
4,686,690 + PFR28_04100 0.81 +0.3
4,686,691 - PFR28_04100 0.81 +0.3
4,686,691 - PFR28_04100 0.81 -1.7
4,686,691 - PFR28_04100 0.81 +0.3
4,686,691 - PFR28_04100 0.81 -0.3
4,686,691 - PFR28_04100 0.81 -1.7
4,686,691 - PFR28_04100 0.81 -1.0
4,686,691 - PFR28_04100 0.81 -1.3
4,686,691 - PFR28_04100 0.81 -0.5
4,686,691 - PFR28_04100 0.81 -1.5
4,686,691 - PFR28_04100 0.81 -0.7
4,686,691 - PFR28_04100 0.81 -1.9
4,686,691 - PFR28_04100 0.81 -0.0
4,686,691 - PFR28_04100 0.81 -1.5
4,686,691 - PFR28_04100 0.81 -0.3
4,686,691 - PFR28_04100 0.81 -0.3
4,686,752 + PFR28_04100 0.89 +0.3
4,686,753 - PFR28_04100 0.89 -2.2
4,686,753 - PFR28_04100 0.89 -1.0
4,686,983 + PFR28_04101 0.20 -0.3
4,687,124 + PFR28_04101 0.40 -2.0
4,687,617 + -1.0
4,687,617 + -2.3
4,687,617 + +0.4
4,687,617 + +0.3
4,687,617 + +0.3
4,687,617 + +0.3
4,687,618 - -1.5
4,687,618 - -2.2
4,687,618 - -1.0
4,687,618 - -0.7
4,687,618 - -0.7
4,687,618 - -1.9
4,687,618 - -0.3

Or see this region's nucleotide sequence