Strain Fitness in Pseudomonas sp. RS175 around PFR28_03967

Experiment: D-Glucose (C) 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_03966 and PFR28_03967 overlap by 14 nucleotidesPFR28_03967 and PFR28_03968 are separated by 132 nucleotidesPFR28_03968 and PFR28_03969 overlap by 11 nucleotides PFR28_03966: PFR28_03966 - Cardiolipin synthase B, at 4,549,997 to 4,551,295 _03966 PFR28_03967: PFR28_03967 - Inner membrane protein YbhN, at 4,551,282 to 4,552,298 _03967 PFR28_03968: PFR28_03968 - hypothetical protein, at 4,552,431 to 4,553,189 _03968 PFR28_03969: PFR28_03969 - hypothetical protein, at 4,553,179 to 4,554,288 _03969 Position (kb) 4551 4552 4553Strain fitness (log2 ratio) -1 0 1 2at 4550.513 kb on + strand, within PFR28_03966at 4550.514 kb on - strand, within PFR28_03966at 4550.514 kb on - strand, within PFR28_03966at 4550.597 kb on + strand, within PFR28_03966at 4550.598 kb on - strand, within PFR28_03966at 4550.598 kb on - strand, within PFR28_03966at 4550.598 kb on - strand, within PFR28_03966at 4550.598 kb on - strand, within PFR28_03966at 4550.673 kb on - strand, within PFR28_03966at 4550.714 kb on + strand, within PFR28_03966at 4550.715 kb on - strand, within PFR28_03966at 4550.715 kb on - strand, within PFR28_03966at 4550.715 kb on - strand, within PFR28_03966at 4550.732 kb on - strand, within PFR28_03966at 4550.765 kb on + strand, within PFR28_03966at 4550.765 kb on + strand, within PFR28_03966at 4550.766 kb on - strand, within PFR28_03966at 4550.766 kb on - strand, within PFR28_03966at 4550.766 kb on - strand, within PFR28_03966at 4550.897 kb on + strand, within PFR28_03966at 4550.897 kb on + strand, within PFR28_03966at 4550.897 kb on + strand, within PFR28_03966at 4550.898 kb on - strand, within PFR28_03966at 4550.924 kb on + strand, within PFR28_03966at 4550.924 kb on + strand, within PFR28_03966at 4550.924 kb on + strand, within PFR28_03966at 4550.924 kb on + strand, within PFR28_03966at 4550.924 kb on + strand, within PFR28_03966at 4550.924 kb on + strand, within PFR28_03966at 4550.924 kb on + strand, within PFR28_03966at 4550.924 kb on + strand, within PFR28_03966at 4550.925 kb on - strand, within PFR28_03966at 4550.925 kb on - strand, within PFR28_03966at 4550.925 kb on - strand, within PFR28_03966at 4550.925 kb on - strand, within PFR28_03966at 4550.925 kb on - strand, within PFR28_03966at 4550.925 kb on - strand, within PFR28_03966at 4550.930 kb on + strand, within PFR28_03966at 4550.931 kb on - strand, within PFR28_03966at 4551.418 kb on + strand, within PFR28_03967at 4551.419 kb on - strand, within PFR28_03967at 4551.419 kb on - strand, within PFR28_03967at 4551.533 kb on + strand, within PFR28_03967at 4551.533 kb on + strand, within PFR28_03967at 4551.534 kb on - strand, within PFR28_03967at 4551.534 kb on - strand, within PFR28_03967at 4551.534 kb on - strand, within PFR28_03967at 4551.534 kb on - strand, within PFR28_03967at 4551.537 kb on + strand, within PFR28_03967at 4551.537 kb on + strand, within PFR28_03967at 4551.537 kb on + strand, within PFR28_03967at 4551.537 kb on + strand, within PFR28_03967at 4551.537 kb on + strand, within PFR28_03967at 4551.537 kb on + strand, within PFR28_03967at 4551.537 kb on + strand, within PFR28_03967at 4551.537 kb on + strand, within PFR28_03967at 4551.537 kb on + strand, within PFR28_03967at 4551.538 kb on - strand, within PFR28_03967at 4551.538 kb on - strand, within PFR28_03967at 4551.538 kb on - strand, within PFR28_03967at 4551.538 kb on - strand, within PFR28_03967at 4551.538 kb on - strand, within PFR28_03967at 4551.538 kb on - strand, within PFR28_03967at 4551.538 kb on - strand, within PFR28_03967at 4551.538 kb on - strand, within PFR28_03967at 4551.538 kb on - strand, within PFR28_03967at 4551.538 kb on - strand, within PFR28_03967at 4551.538 kb on - strand, within PFR28_03967at 4551.538 kb on - strand, within PFR28_03967at 4551.538 kb on - strand, within PFR28_03967at 4551.538 kb on - strand, within PFR28_03967at 4551.538 kb on - strand, within PFR28_03967at 4551.538 kb on - strand, within PFR28_03967at 4551.538 kb on - strand, within PFR28_03967at 4551.538 kb on - strand, within PFR28_03967at 4551.538 kb on - strand, within PFR28_03967at 4551.538 kb on - strand, within PFR28_03967at 4551.538 kb on - strand, within PFR28_03967at 4551.567 kb on + strand, within PFR28_03967at 4551.567 kb on + strand, within PFR28_03967at 4551.567 kb on + strand, within PFR28_03967at 4551.567 kb on + strand, within PFR28_03967at 4551.567 kb on + strand, within PFR28_03967at 4551.567 kb on + strand, within PFR28_03967at 4551.567 kb on + strand, within PFR28_03967at 4551.567 kb on + strand, within PFR28_03967at 4551.568 kb on - strand, within PFR28_03967at 4551.568 kb on - strand, within PFR28_03967at 4551.568 kb on - strand, within PFR28_03967at 4551.568 kb on - strand, within PFR28_03967at 4551.568 kb on - strand, within PFR28_03967at 4551.568 kb on - strand, within PFR28_03967at 4551.568 kb on - strand, within PFR28_03967at 4551.568 kb on - strand, within PFR28_03967at 4551.621 kb on + strand, within PFR28_03967at 4551.622 kb on - strand, within PFR28_03967at 4551.682 kb on - strand, within PFR28_03967at 4551.725 kb on - strand, within PFR28_03967at 4551.756 kb on + strand, within PFR28_03967at 4551.756 kb on + strand, within PFR28_03967at 4551.876 kb on + strand, within PFR28_03967at 4552.017 kb on - strand, within PFR28_03967at 4552.060 kb on + strand, within PFR28_03967at 4552.060 kb on + strand, within PFR28_03967at 4552.061 kb on - strand, within PFR28_03967at 4552.061 kb on - strand, within PFR28_03967at 4552.091 kb on + strand, within PFR28_03967at 4552.203 kb on + strandat 4552.203 kb on + strandat 4552.204 kb on - strandat 4552.204 kb on - strandat 4552.204 kb on - strandat 4552.204 kb on - strandat 4552.204 kb on - strandat 4552.204 kb on - strandat 4552.239 kb on + strandat 4552.239 kb on + strandat 4552.239 kb on + strandat 4552.239 kb on + strandat 4552.239 kb on + strandat 4552.240 kb on - strandat 4552.240 kb on - strandat 4552.240 kb on - strandat 4552.240 kb on - strandat 4552.240 kb on - strandat 4552.240 kb on - strandat 4552.240 kb on - strandat 4552.240 kb on - strandat 4552.240 kb on - strandat 4552.240 kb on - strandat 4552.504 kb on + strandat 4552.504 kb on + strandat 4552.504 kb on + strandat 4552.504 kb on + strandat 4552.504 kb on + strandat 4552.504 kb on + strandat 4552.504 kb on + strandat 4552.504 kb on + strandat 4552.504 kb on + strandat 4552.505 kb on - strandat 4552.505 kb on - strandat 4552.505 kb on - strandat 4552.505 kb on - strandat 4552.505 kb on - strandat 4552.505 kb on - strandat 4552.505 kb on - strandat 4552.505 kb on - strandat 4552.505 kb on - strandat 4552.620 kb on + strand, within PFR28_03968at 4552.620 kb on + strand, within PFR28_03968at 4552.620 kb on + strand, within PFR28_03968at 4552.621 kb on - strand, within PFR28_03968at 4552.697 kb on + strand, within PFR28_03968at 4552.763 kb on + strand, within PFR28_03968at 4552.764 kb on - strand, within PFR28_03968at 4552.764 kb on - strand, within PFR28_03968at 4552.764 kb on - strand, within PFR28_03968at 4552.858 kb on + strand, within PFR28_03968at 4552.858 kb on + strand, within PFR28_03968at 4552.921 kb on + strand, within PFR28_03968at 4552.922 kb on - strand, within PFR28_03968at 4552.922 kb on - strand, within PFR28_03968at 4553.089 kb on - strand, within PFR28_03968at 4553.180 kb on + strandat 4553.180 kb on + strandat 4553.203 kb on + strandat 4553.203 kb on + strandat 4553.204 kb on - strandat 4553.207 kb on + strandat 4553.207 kb on + strandat 4553.207 kb on + strandat 4553.207 kb on + strandat 4553.208 kb on - strandat 4553.208 kb on - strandat 4553.208 kb on - strandat 4553.208 kb on - strandat 4553.208 kb on - strandat 4553.215 kb on + strandat 4553.285 kb on + strandat 4553.285 kb on + strandat 4553.285 kb on + strandat 4553.285 kb on + strandat 4553.285 kb on + strandat 4553.285 kb on + strandat 4553.285 kb on + strandat 4553.285 kb on + strandat 4553.286 kb on - strandat 4553.286 kb on - strandat 4553.286 kb on - strandat 4553.286 kb on - strandat 4553.286 kb on - strandat 4553.286 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C) 10 mM
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4,550,513 + PFR28_03966 0.40 -0.1
4,550,514 - PFR28_03966 0.40 -0.5
4,550,514 - PFR28_03966 0.40 +0.6
4,550,597 + PFR28_03966 0.46 -0.3
4,550,598 - PFR28_03966 0.46 -0.3
4,550,598 - PFR28_03966 0.46 +0.3
4,550,598 - PFR28_03966 0.46 +0.2
4,550,598 - PFR28_03966 0.46 +0.4
4,550,673 - PFR28_03966 0.52 +0.3
4,550,714 + PFR28_03966 0.55 +0.3
4,550,715 - PFR28_03966 0.55 +1.3
4,550,715 - PFR28_03966 0.55 -0.2
4,550,715 - PFR28_03966 0.55 -0.2
4,550,732 - PFR28_03966 0.57 -1.3
4,550,765 + PFR28_03966 0.59 -0.4
4,550,765 + PFR28_03966 0.59 -0.4
4,550,766 - PFR28_03966 0.59 +1.6
4,550,766 - PFR28_03966 0.59 +0.4
4,550,766 - PFR28_03966 0.59 +0.0
4,550,897 + PFR28_03966 0.69 +0.1
4,550,897 + PFR28_03966 0.69 +0.2
4,550,897 + PFR28_03966 0.69 -0.6
4,550,898 - PFR28_03966 0.69 -0.5
4,550,924 + PFR28_03966 0.71 -0.3
4,550,924 + PFR28_03966 0.71 +0.6
4,550,924 + PFR28_03966 0.71 +0.2
4,550,924 + PFR28_03966 0.71 +0.3
4,550,924 + PFR28_03966 0.71 -0.3
4,550,924 + PFR28_03966 0.71 +0.6
4,550,924 + PFR28_03966 0.71 +0.1
4,550,924 + PFR28_03966 0.71 +1.3
4,550,925 - PFR28_03966 0.71 +0.1
4,550,925 - PFR28_03966 0.71 +0.6
4,550,925 - PFR28_03966 0.71 +0.5
4,550,925 - PFR28_03966 0.71 -0.6
4,550,925 - PFR28_03966 0.71 +0.7
4,550,925 - PFR28_03966 0.71 +0.3
4,550,930 + PFR28_03966 0.72 -0.5
4,550,931 - PFR28_03966 0.72 +0.2
4,551,418 + PFR28_03967 0.13 -1.7
4,551,419 - PFR28_03967 0.13 -0.1
4,551,419 - PFR28_03967 0.13 +0.7
4,551,533 + PFR28_03967 0.25 +0.3
4,551,533 + PFR28_03967 0.25 +0.1
4,551,534 - PFR28_03967 0.25 -0.0
4,551,534 - PFR28_03967 0.25 +0.4
4,551,534 - PFR28_03967 0.25 +0.1
4,551,534 - PFR28_03967 0.25 -0.0
4,551,537 + PFR28_03967 0.25 +0.2
4,551,537 + PFR28_03967 0.25 -0.1
4,551,537 + PFR28_03967 0.25 -0.3
4,551,537 + PFR28_03967 0.25 +2.3
4,551,537 + PFR28_03967 0.25 -0.1
4,551,537 + PFR28_03967 0.25 +1.1
4,551,537 + PFR28_03967 0.25 +0.6
4,551,537 + PFR28_03967 0.25 +0.3
4,551,537 + PFR28_03967 0.25 -0.4
4,551,538 - PFR28_03967 0.25 +0.1
4,551,538 - PFR28_03967 0.25 +0.8
4,551,538 - PFR28_03967 0.25 -1.5
4,551,538 - PFR28_03967 0.25 -0.7
4,551,538 - PFR28_03967 0.25 +0.3
4,551,538 - PFR28_03967 0.25 -0.6
4,551,538 - PFR28_03967 0.25 -0.0
4,551,538 - PFR28_03967 0.25 -0.7
4,551,538 - PFR28_03967 0.25 -0.5
4,551,538 - PFR28_03967 0.25 +0.6
4,551,538 - PFR28_03967 0.25 -0.0
4,551,538 - PFR28_03967 0.25 +0.4
4,551,538 - PFR28_03967 0.25 -0.7
4,551,538 - PFR28_03967 0.25 -0.3
4,551,538 - PFR28_03967 0.25 +0.5
4,551,538 - PFR28_03967 0.25 +1.3
4,551,538 - PFR28_03967 0.25 +0.6
4,551,538 - PFR28_03967 0.25 +1.3
4,551,538 - PFR28_03967 0.25 +0.2
4,551,538 - PFR28_03967 0.25 -1.0
4,551,538 - PFR28_03967 0.25 +0.2
4,551,567 + PFR28_03967 0.28 +0.6
4,551,567 + PFR28_03967 0.28 +0.4
4,551,567 + PFR28_03967 0.28 -1.0
4,551,567 + PFR28_03967 0.28 +0.1
4,551,567 + PFR28_03967 0.28 -1.1
4,551,567 + PFR28_03967 0.28 -0.3
4,551,567 + PFR28_03967 0.28 +1.0
4,551,567 + PFR28_03967 0.28 -1.5
4,551,568 - PFR28_03967 0.28 -0.4
4,551,568 - PFR28_03967 0.28 -0.2
4,551,568 - PFR28_03967 0.28 -0.3
4,551,568 - PFR28_03967 0.28 +0.0
4,551,568 - PFR28_03967 0.28 -0.8
4,551,568 - PFR28_03967 0.28 -0.3
4,551,568 - PFR28_03967 0.28 +0.1
4,551,568 - PFR28_03967 0.28 +1.8
4,551,621 + PFR28_03967 0.33 +0.2
4,551,622 - PFR28_03967 0.33 +0.3
4,551,682 - PFR28_03967 0.39 +0.1
4,551,725 - PFR28_03967 0.44 +0.0
4,551,756 + PFR28_03967 0.47 +0.9
4,551,756 + PFR28_03967 0.47 -0.5
4,551,876 + PFR28_03967 0.58 -0.8
4,552,017 - PFR28_03967 0.72 +0.1
4,552,060 + PFR28_03967 0.76 +0.4
4,552,060 + PFR28_03967 0.76 -0.7
4,552,061 - PFR28_03967 0.77 -0.4
4,552,061 - PFR28_03967 0.77 +0.3
4,552,091 + PFR28_03967 0.80 +0.4
4,552,203 + -0.0
4,552,203 + +0.2
4,552,204 - +0.2
4,552,204 - -1.5
4,552,204 - -0.2
4,552,204 - +0.0
4,552,204 - -0.5
4,552,204 - +0.4
4,552,239 + +0.2
4,552,239 + -0.2
4,552,239 + -1.0
4,552,239 + +0.2
4,552,239 + +0.3
4,552,240 - +0.9
4,552,240 - -0.2
4,552,240 - +0.3
4,552,240 - +0.4
4,552,240 - -0.9
4,552,240 - +0.6
4,552,240 - -0.0
4,552,240 - +1.3
4,552,240 - -0.5
4,552,240 - -0.1
4,552,504 + -0.2
4,552,504 + -0.3
4,552,504 + -0.4
4,552,504 + +0.3
4,552,504 + -0.1
4,552,504 + +1.3
4,552,504 + +0.2
4,552,504 + -0.0
4,552,504 + +1.1
4,552,505 - +0.4
4,552,505 - +0.3
4,552,505 - +0.6
4,552,505 - -0.7
4,552,505 - -0.4
4,552,505 - +0.9
4,552,505 - -0.4
4,552,505 - -0.7
4,552,505 - +1.1
4,552,620 + PFR28_03968 0.25 -0.5
4,552,620 + PFR28_03968 0.25 +0.4
4,552,620 + PFR28_03968 0.25 +1.3
4,552,621 - PFR28_03968 0.25 +1.2
4,552,697 + PFR28_03968 0.35 +0.2
4,552,763 + PFR28_03968 0.44 -0.1
4,552,764 - PFR28_03968 0.44 -0.4
4,552,764 - PFR28_03968 0.44 +0.9
4,552,764 - PFR28_03968 0.44 +0.4
4,552,858 + PFR28_03968 0.56 +0.0
4,552,858 + PFR28_03968 0.56 -0.0
4,552,921 + PFR28_03968 0.65 -0.8
4,552,922 - PFR28_03968 0.65 -1.2
4,552,922 - PFR28_03968 0.65 -0.2
4,553,089 - PFR28_03968 0.87 +0.1
4,553,180 + -0.7
4,553,180 + +0.7
4,553,203 + -0.2
4,553,203 + -0.1
4,553,204 - +0.5
4,553,207 + -0.0
4,553,207 + -0.5
4,553,207 + -0.2
4,553,207 + -1.4
4,553,208 - +0.1
4,553,208 - -1.4
4,553,208 - -0.3
4,553,208 - +0.2
4,553,208 - -0.4
4,553,215 + -0.1
4,553,285 + +0.1
4,553,285 + -0.4
4,553,285 + -0.7
4,553,285 + +0.2
4,553,285 + -0.2
4,553,285 + +0.5
4,553,285 + -0.1
4,553,285 + -0.1
4,553,286 - -0.6
4,553,286 - +0.3
4,553,286 - +0.1
4,553,286 - -0.1
4,553,286 - -0.1
4,553,286 - +0.3

Or see this region's nucleotide sequence