Experiment: D-Glucose (C) 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFR28_03859 and PFR28_03860 are separated by 104 nucleotides PFR28_03860 and PFR28_03861 are separated by 167 nucleotides
PFR28_03859: PFR28_03859 - Tn3 family transposase TnXax1, at 4,435,768 to 4,437,090
_03859
PFR28_03860: PFR28_03860 - putative murein peptide carboxypeptidase, at 4,437,195 to 4,438,151
_03860
PFR28_03861: PFR28_03861 - Lipoyl synthase, at 4,438,319 to 4,439,341
_03861
Position (kb)
4437
4438
4439 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 4436.320 kb on + strand, within PFR28_03859 at 4436.321 kb on - strand, within PFR28_03859 at 4436.461 kb on + strand, within PFR28_03859 at 4436.461 kb on + strand, within PFR28_03859 at 4436.461 kb on + strand, within PFR28_03859 at 4436.462 kb on - strand, within PFR28_03859 at 4436.462 kb on - strand, within PFR28_03859 at 4436.462 kb on - strand, within PFR28_03859 at 4436.462 kb on - strand, within PFR28_03859 at 4436.462 kb on - strand, within PFR28_03859 at 4436.462 kb on - strand, within PFR28_03859 at 4436.462 kb on - strand, within PFR28_03859 at 4436.548 kb on + strand, within PFR28_03859 at 4436.548 kb on + strand, within PFR28_03859 at 4436.549 kb on - strand, within PFR28_03859 at 4436.549 kb on - strand, within PFR28_03859 at 4436.549 kb on - strand, within PFR28_03859 at 4436.620 kb on + strand, within PFR28_03859 at 4436.620 kb on + strand, within PFR28_03859 at 4436.621 kb on - strand, within PFR28_03859 at 4436.803 kb on + strand, within PFR28_03859 at 4436.803 kb on + strand, within PFR28_03859 at 4436.803 kb on + strand, within PFR28_03859 at 4436.804 kb on - strand, within PFR28_03859 at 4436.804 kb on - strand, within PFR28_03859 at 4436.804 kb on - strand, within PFR28_03859 at 4436.804 kb on - strand, within PFR28_03859 at 4436.875 kb on + strand, within PFR28_03859 at 4436.876 kb on - strand, within PFR28_03859 at 4436.876 kb on - strand, within PFR28_03859 at 4436.876 kb on - strand, within PFR28_03859 at 4436.956 kb on + strand, within PFR28_03859 at 4436.957 kb on - strand, within PFR28_03859 at 4437.232 kb on - strand at 4437.232 kb on - strand at 4437.337 kb on + strand, within PFR28_03860 at 4437.472 kb on + strand, within PFR28_03860 at 4437.620 kb on - strand, within PFR28_03860 at 4437.620 kb on - strand, within PFR28_03860 at 4437.789 kb on - strand, within PFR28_03860 at 4437.789 kb on - strand, within PFR28_03860 at 4437.791 kb on + strand, within PFR28_03860 at 4437.792 kb on - strand, within PFR28_03860 at 4437.979 kb on + strand, within PFR28_03860 at 4437.979 kb on + strand, within PFR28_03860 at 4437.979 kb on + strand, within PFR28_03860 at 4437.993 kb on + strand, within PFR28_03860 at 4438.186 kb on + strand at 4438.187 kb on - strand at 4438.187 kb on - strand at 4438.187 kb on - strand at 4438.229 kb on + strand at 4438.229 kb on + strand at 4438.229 kb on + strand at 4438.230 kb on - strand at 4438.247 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C) 10 mM remove 4,436,320 + PFR28_03859 0.42 +2.3 4,436,321 - PFR28_03859 0.42 +0.1 4,436,461 + PFR28_03859 0.52 -1.2 4,436,461 + PFR28_03859 0.52 -1.3 4,436,461 + PFR28_03859 0.52 -0.5 4,436,462 - PFR28_03859 0.52 -0.6 4,436,462 - PFR28_03859 0.52 -1.1 4,436,462 - PFR28_03859 0.52 -0.7 4,436,462 - PFR28_03859 0.52 -0.6 4,436,462 - PFR28_03859 0.52 +0.2 4,436,462 - PFR28_03859 0.52 +0.1 4,436,462 - PFR28_03859 0.52 +0.1 4,436,548 + PFR28_03859 0.59 -0.9 4,436,548 + PFR28_03859 0.59 +0.0 4,436,549 - PFR28_03859 0.59 -0.2 4,436,549 - PFR28_03859 0.59 +1.0 4,436,549 - PFR28_03859 0.59 -0.4 4,436,620 + PFR28_03859 0.64 -0.0 4,436,620 + PFR28_03859 0.64 +0.6 4,436,621 - PFR28_03859 0.64 +0.1 4,436,803 + PFR28_03859 0.78 -0.1 4,436,803 + PFR28_03859 0.78 -1.0 4,436,803 + PFR28_03859 0.78 -1.3 4,436,804 - PFR28_03859 0.78 +1.3 4,436,804 - PFR28_03859 0.78 +0.5 4,436,804 - PFR28_03859 0.78 +1.3 4,436,804 - PFR28_03859 0.78 +0.1 4,436,875 + PFR28_03859 0.84 -0.2 4,436,876 - PFR28_03859 0.84 +1.0 4,436,876 - PFR28_03859 0.84 -0.6 4,436,876 - PFR28_03859 0.84 +0.5 4,436,956 + PFR28_03859 0.90 -0.3 4,436,957 - PFR28_03859 0.90 +0.9 4,437,232 - -1.7 4,437,232 - -1.4 4,437,337 + PFR28_03860 0.15 -3.8 4,437,472 + PFR28_03860 0.29 -1.9 4,437,620 - PFR28_03860 0.44 -0.0 4,437,620 - PFR28_03860 0.44 -1.0 4,437,789 - PFR28_03860 0.62 -2.0 4,437,789 - PFR28_03860 0.62 -4.1 4,437,791 + PFR28_03860 0.62 -2.5 4,437,792 - PFR28_03860 0.62 -2.6 4,437,979 + PFR28_03860 0.82 -2.2 4,437,979 + PFR28_03860 0.82 -4.0 4,437,979 + PFR28_03860 0.82 -2.0 4,437,993 + PFR28_03860 0.83 -2.1 4,438,186 + -0.7 4,438,187 - -0.0 4,438,187 - -0.0 4,438,187 - +0.1 4,438,229 + +0.1 4,438,229 + -1.5 4,438,229 + +1.1 4,438,230 - +0.9 4,438,247 + +0.2
Or see this region's nucleotide sequence