Strain Fitness in Pseudomonas sp. RS175 around PFR28_03860

Experiment: D-Glucose (C) 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_03859 and PFR28_03860 are separated by 104 nucleotidesPFR28_03860 and PFR28_03861 are separated by 167 nucleotides PFR28_03859: PFR28_03859 - Tn3 family transposase TnXax1, at 4,435,768 to 4,437,090 _03859 PFR28_03860: PFR28_03860 - putative murein peptide carboxypeptidase, at 4,437,195 to 4,438,151 _03860 PFR28_03861: PFR28_03861 - Lipoyl synthase, at 4,438,319 to 4,439,341 _03861 Position (kb) 4437 4438 4439Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 4436.320 kb on + strand, within PFR28_03859at 4436.321 kb on - strand, within PFR28_03859at 4436.461 kb on + strand, within PFR28_03859at 4436.461 kb on + strand, within PFR28_03859at 4436.461 kb on + strand, within PFR28_03859at 4436.462 kb on - strand, within PFR28_03859at 4436.462 kb on - strand, within PFR28_03859at 4436.462 kb on - strand, within PFR28_03859at 4436.462 kb on - strand, within PFR28_03859at 4436.462 kb on - strand, within PFR28_03859at 4436.462 kb on - strand, within PFR28_03859at 4436.462 kb on - strand, within PFR28_03859at 4436.548 kb on + strand, within PFR28_03859at 4436.548 kb on + strand, within PFR28_03859at 4436.549 kb on - strand, within PFR28_03859at 4436.549 kb on - strand, within PFR28_03859at 4436.549 kb on - strand, within PFR28_03859at 4436.620 kb on + strand, within PFR28_03859at 4436.620 kb on + strand, within PFR28_03859at 4436.621 kb on - strand, within PFR28_03859at 4436.803 kb on + strand, within PFR28_03859at 4436.803 kb on + strand, within PFR28_03859at 4436.803 kb on + strand, within PFR28_03859at 4436.804 kb on - strand, within PFR28_03859at 4436.804 kb on - strand, within PFR28_03859at 4436.804 kb on - strand, within PFR28_03859at 4436.804 kb on - strand, within PFR28_03859at 4436.875 kb on + strand, within PFR28_03859at 4436.876 kb on - strand, within PFR28_03859at 4436.876 kb on - strand, within PFR28_03859at 4436.876 kb on - strand, within PFR28_03859at 4436.956 kb on + strand, within PFR28_03859at 4436.957 kb on - strand, within PFR28_03859at 4437.232 kb on - strandat 4437.232 kb on - strandat 4437.337 kb on + strand, within PFR28_03860at 4437.472 kb on + strand, within PFR28_03860at 4437.620 kb on - strand, within PFR28_03860at 4437.620 kb on - strand, within PFR28_03860at 4437.789 kb on - strand, within PFR28_03860at 4437.789 kb on - strand, within PFR28_03860at 4437.791 kb on + strand, within PFR28_03860at 4437.792 kb on - strand, within PFR28_03860at 4437.979 kb on + strand, within PFR28_03860at 4437.979 kb on + strand, within PFR28_03860at 4437.979 kb on + strand, within PFR28_03860at 4437.993 kb on + strand, within PFR28_03860at 4438.186 kb on + strandat 4438.187 kb on - strandat 4438.187 kb on - strandat 4438.187 kb on - strandat 4438.229 kb on + strandat 4438.229 kb on + strandat 4438.229 kb on + strandat 4438.230 kb on - strandat 4438.247 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C) 10 mM
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4,436,320 + PFR28_03859 0.42 +2.3
4,436,321 - PFR28_03859 0.42 +0.1
4,436,461 + PFR28_03859 0.52 -1.2
4,436,461 + PFR28_03859 0.52 -1.3
4,436,461 + PFR28_03859 0.52 -0.5
4,436,462 - PFR28_03859 0.52 -0.6
4,436,462 - PFR28_03859 0.52 -1.1
4,436,462 - PFR28_03859 0.52 -0.7
4,436,462 - PFR28_03859 0.52 -0.6
4,436,462 - PFR28_03859 0.52 +0.2
4,436,462 - PFR28_03859 0.52 +0.1
4,436,462 - PFR28_03859 0.52 +0.1
4,436,548 + PFR28_03859 0.59 -0.9
4,436,548 + PFR28_03859 0.59 +0.0
4,436,549 - PFR28_03859 0.59 -0.2
4,436,549 - PFR28_03859 0.59 +1.0
4,436,549 - PFR28_03859 0.59 -0.4
4,436,620 + PFR28_03859 0.64 -0.0
4,436,620 + PFR28_03859 0.64 +0.6
4,436,621 - PFR28_03859 0.64 +0.1
4,436,803 + PFR28_03859 0.78 -0.1
4,436,803 + PFR28_03859 0.78 -1.0
4,436,803 + PFR28_03859 0.78 -1.3
4,436,804 - PFR28_03859 0.78 +1.3
4,436,804 - PFR28_03859 0.78 +0.5
4,436,804 - PFR28_03859 0.78 +1.3
4,436,804 - PFR28_03859 0.78 +0.1
4,436,875 + PFR28_03859 0.84 -0.2
4,436,876 - PFR28_03859 0.84 +1.0
4,436,876 - PFR28_03859 0.84 -0.6
4,436,876 - PFR28_03859 0.84 +0.5
4,436,956 + PFR28_03859 0.90 -0.3
4,436,957 - PFR28_03859 0.90 +0.9
4,437,232 - -1.7
4,437,232 - -1.4
4,437,337 + PFR28_03860 0.15 -3.8
4,437,472 + PFR28_03860 0.29 -1.9
4,437,620 - PFR28_03860 0.44 -0.0
4,437,620 - PFR28_03860 0.44 -1.0
4,437,789 - PFR28_03860 0.62 -2.0
4,437,789 - PFR28_03860 0.62 -4.1
4,437,791 + PFR28_03860 0.62 -2.5
4,437,792 - PFR28_03860 0.62 -2.6
4,437,979 + PFR28_03860 0.82 -2.2
4,437,979 + PFR28_03860 0.82 -4.0
4,437,979 + PFR28_03860 0.82 -2.0
4,437,993 + PFR28_03860 0.83 -2.1
4,438,186 + -0.7
4,438,187 - -0.0
4,438,187 - -0.0
4,438,187 - +0.1
4,438,229 + +0.1
4,438,229 + -1.5
4,438,229 + +1.1
4,438,230 - +0.9
4,438,247 + +0.2

Or see this region's nucleotide sequence