Strain Fitness in Pseudomonas sp. RS175 around PFR28_03856

Experiment: D-Glucose (C) 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_03855 and PFR28_03856 are separated by 89 nucleotidesPFR28_03856 and PFR28_03857 are separated by 50 nucleotides PFR28_03855: PFR28_03855 - Leucine--tRNA ligase, at 4,430,643 to 4,433,381 _03855 PFR28_03856: PFR28_03856 - LPS-assembly lipoprotein LptE, at 4,433,471 to 4,434,076 _03856 PFR28_03857: PFR28_03857 - DNA polymerase III subunit delta, at 4,434,127 to 4,435,164 _03857 Position (kb) 4433 4434 4435Strain fitness (log2 ratio) -2 -1 0 1at 4433.379 kb on + strandat 4433.380 kb on - strandat 4433.380 kb on - strandat 4433.380 kb on - strandat 4433.380 kb on - strandat 4433.417 kb on + strandat 4433.417 kb on + strandat 4433.447 kb on + strandat 4433.482 kb on + strandat 4433.482 kb on + strandat 4433.482 kb on + strandat 4433.669 kb on + strand, within PFR28_03856at 4433.669 kb on + strand, within PFR28_03856at 4433.669 kb on + strand, within PFR28_03856at 4433.744 kb on + strand, within PFR28_03856at 4433.744 kb on + strand, within PFR28_03856at 4433.768 kb on + strand, within PFR28_03856at 4433.768 kb on + strand, within PFR28_03856at 4433.895 kb on + strand, within PFR28_03856at 4434.074 kb on + strandat 4434.075 kb on - strandat 4434.075 kb on - strandat 4434.075 kb on - strandat 4434.115 kb on + strandat 4434.115 kb on + strandat 4434.115 kb on + strandat 4434.115 kb on + strandat 4434.116 kb on - strandat 4434.126 kb on + strandat 4434.126 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C) 10 mM
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4,433,379 + +0.3
4,433,380 - -0.3
4,433,380 - +0.4
4,433,380 - +0.1
4,433,380 - -0.7
4,433,417 + -1.2
4,433,417 + -0.0
4,433,447 + -1.0
4,433,482 + +1.3
4,433,482 + -0.3
4,433,482 + -1.9
4,433,669 + PFR28_03856 0.33 +0.3
4,433,669 + PFR28_03856 0.33 -1.0
4,433,669 + PFR28_03856 0.33 -0.7
4,433,744 + PFR28_03856 0.45 -1.5
4,433,744 + PFR28_03856 0.45 -0.3
4,433,768 + PFR28_03856 0.49 -0.3
4,433,768 + PFR28_03856 0.49 +0.3
4,433,895 + PFR28_03856 0.70 -0.3
4,434,074 + -0.1
4,434,075 - -1.5
4,434,075 - +0.3
4,434,075 - +0.4
4,434,115 + -0.6
4,434,115 + -0.1
4,434,115 + -0.1
4,434,115 + -0.5
4,434,116 - -0.7
4,434,126 + -0.7
4,434,126 + -1.3

Or see this region's nucleotide sequence