Experiment: D-Glucose (C) 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFR28_03855 and PFR28_03856 are separated by 89 nucleotides PFR28_03856 and PFR28_03857 are separated by 50 nucleotides
PFR28_03855: PFR28_03855 - Leucine--tRNA ligase, at 4,430,643 to 4,433,381
_03855
PFR28_03856: PFR28_03856 - LPS-assembly lipoprotein LptE, at 4,433,471 to 4,434,076
_03856
PFR28_03857: PFR28_03857 - DNA polymerase III subunit delta, at 4,434,127 to 4,435,164
_03857
Position (kb)
4433
4434
4435 Strain fitness (log2 ratio)
-2
-1
0
1 at 4433.379 kb on + strand at 4433.380 kb on - strand at 4433.380 kb on - strand at 4433.380 kb on - strand at 4433.380 kb on - strand at 4433.417 kb on + strand at 4433.417 kb on + strand at 4433.447 kb on + strand at 4433.482 kb on + strand at 4433.482 kb on + strand at 4433.482 kb on + strand at 4433.669 kb on + strand, within PFR28_03856 at 4433.669 kb on + strand, within PFR28_03856 at 4433.669 kb on + strand, within PFR28_03856 at 4433.744 kb on + strand, within PFR28_03856 at 4433.744 kb on + strand, within PFR28_03856 at 4433.768 kb on + strand, within PFR28_03856 at 4433.768 kb on + strand, within PFR28_03856 at 4433.895 kb on + strand, within PFR28_03856 at 4434.074 kb on + strand at 4434.075 kb on - strand at 4434.075 kb on - strand at 4434.075 kb on - strand at 4434.115 kb on + strand at 4434.115 kb on + strand at 4434.115 kb on + strand at 4434.115 kb on + strand at 4434.116 kb on - strand at 4434.126 kb on + strand at 4434.126 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C) 10 mM remove 4,433,379 + +0.3 4,433,380 - -0.3 4,433,380 - +0.4 4,433,380 - +0.1 4,433,380 - -0.7 4,433,417 + -1.2 4,433,417 + -0.0 4,433,447 + -1.0 4,433,482 + +1.3 4,433,482 + -0.3 4,433,482 + -1.9 4,433,669 + PFR28_03856 0.33 +0.3 4,433,669 + PFR28_03856 0.33 -1.0 4,433,669 + PFR28_03856 0.33 -0.7 4,433,744 + PFR28_03856 0.45 -1.5 4,433,744 + PFR28_03856 0.45 -0.3 4,433,768 + PFR28_03856 0.49 -0.3 4,433,768 + PFR28_03856 0.49 +0.3 4,433,895 + PFR28_03856 0.70 -0.3 4,434,074 + -0.1 4,434,075 - -1.5 4,434,075 - +0.3 4,434,075 - +0.4 4,434,115 + -0.6 4,434,115 + -0.1 4,434,115 + -0.1 4,434,115 + -0.5 4,434,116 - -0.7 4,434,126 + -0.7 4,434,126 + -1.3
Or see this region's nucleotide sequence