Strain Fitness in Pseudomonas sp. RS175 around PFR28_03266

Experiment: D-Glucose (C) 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_03265 and PFR28_03266 are separated by 529 nucleotidesPFR28_03266 and PFR28_03267 are separated by 184 nucleotides PFR28_03265: PFR28_03265 - tRNA-Arg, at 3,775,789 to 3,775,865 _03265 PFR28_03266: PFR28_03266 - hypothetical protein, at 3,776,395 to 3,776,721 _03266 PFR28_03267: PFR28_03267 - Magnesium transporter MgtE, at 3,776,906 to 3,778,348 _03267 Position (kb) 3776 3777Strain fitness (log2 ratio) -1 0 1 2 3at 3775.642 kb on + strandat 3775.642 kb on + strandat 3775.642 kb on + strandat 3775.643 kb on - strandat 3775.643 kb on - strandat 3775.643 kb on - strandat 3775.643 kb on - strandat 3775.644 kb on + strandat 3775.644 kb on + strandat 3775.644 kb on + strandat 3775.645 kb on - strandat 3775.645 kb on - strandat 3775.659 kb on + strandat 3775.660 kb on - strandat 3775.660 kb on - strandat 3775.728 kb on + strandat 3775.728 kb on + strandat 3775.729 kb on - strandat 3775.729 kb on - strandat 3775.729 kb on - strandat 3775.744 kb on + strandat 3775.745 kb on - strandat 3775.745 kb on - strandat 3775.745 kb on - strandat 3775.783 kb on + strandat 3775.783 kb on + strandat 3775.784 kb on - strandat 3775.784 kb on - strandat 3775.784 kb on - strandat 3775.784 kb on - strandat 3775.784 kb on - strandat 3775.784 kb on - strandat 3775.785 kb on + strandat 3775.785 kb on + strandat 3775.785 kb on + strandat 3775.785 kb on + strandat 3775.785 kb on + strandat 3775.785 kb on + strandat 3775.785 kb on + strandat 3775.785 kb on + strandat 3775.785 kb on + strandat 3775.785 kb on + strandat 3775.785 kb on + strandat 3775.785 kb on + strandat 3775.785 kb on + strandat 3775.785 kb on + strandat 3775.786 kb on - strandat 3775.786 kb on - strandat 3775.786 kb on - strandat 3775.786 kb on - strandat 3775.786 kb on - strandat 3775.786 kb on - strandat 3775.786 kb on - strandat 3775.786 kb on - strandat 3775.786 kb on - strandat 3775.786 kb on - strandat 3775.786 kb on - strandat 3775.786 kb on - strandat 3775.786 kb on - strandat 3775.786 kb on - strandat 3775.786 kb on - strandat 3775.786 kb on - strandat 3775.786 kb on - strandat 3775.880 kb on - strandat 3775.912 kb on - strandat 3775.944 kb on + strandat 3775.944 kb on + strandat 3775.945 kb on - strandat 3775.952 kb on + strandat 3775.952 kb on + strandat 3775.952 kb on + strandat 3775.958 kb on + strandat 3775.958 kb on + strandat 3775.958 kb on + strandat 3775.959 kb on - strandat 3775.959 kb on - strandat 3775.966 kb on + strandat 3775.967 kb on - strandat 3776.048 kb on - strandat 3776.071 kb on + strandat 3776.071 kb on + strandat 3776.071 kb on + strandat 3776.072 kb on - strandat 3776.072 kb on - strandat 3776.072 kb on - strandat 3776.072 kb on - strandat 3776.072 kb on - strandat 3776.072 kb on - strandat 3776.073 kb on + strandat 3776.078 kb on + strandat 3776.078 kb on + strandat 3776.078 kb on + strandat 3776.078 kb on + strandat 3776.078 kb on + strandat 3776.079 kb on - strandat 3776.079 kb on - strandat 3776.079 kb on - strandat 3776.146 kb on + strandat 3776.298 kb on + strandat 3776.337 kb on + strandat 3776.338 kb on - strandat 3776.393 kb on - strandat 3776.393 kb on - strandat 3776.393 kb on - strandat 3776.394 kb on + strandat 3776.395 kb on - strandat 3776.419 kb on + strandat 3776.419 kb on + strandat 3776.450 kb on + strand, within PFR28_03266at 3776.450 kb on + strand, within PFR28_03266at 3776.450 kb on + strand, within PFR28_03266at 3776.450 kb on + strand, within PFR28_03266at 3776.451 kb on - strand, within PFR28_03266at 3776.451 kb on - strand, within PFR28_03266at 3776.451 kb on - strand, within PFR28_03266at 3776.826 kb on + strandat 3776.826 kb on + strandat 3776.826 kb on + strandat 3776.827 kb on - strandat 3776.827 kb on - strandat 3776.827 kb on - strandat 3776.839 kb on + strandat 3776.839 kb on + strandat 3776.839 kb on + strandat 3776.839 kb on + strandat 3776.840 kb on - strandat 3776.840 kb on - strandat 3776.840 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C) 10 mM
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3,775,642 + -0.1
3,775,642 + -0.6
3,775,642 + -0.1
3,775,643 - -0.0
3,775,643 - +0.2
3,775,643 - -0.5
3,775,643 - +1.2
3,775,644 + -1.3
3,775,644 + +0.5
3,775,644 + -1.5
3,775,645 - -0.3
3,775,645 - +0.1
3,775,659 + +0.6
3,775,660 - +0.1
3,775,660 - +0.4
3,775,728 + -0.4
3,775,728 + -0.1
3,775,729 - -0.0
3,775,729 - +2.8
3,775,729 - -0.5
3,775,744 + -1.4
3,775,745 - -0.1
3,775,745 - -1.0
3,775,745 - -0.6
3,775,783 + -0.2
3,775,783 + -0.1
3,775,784 - +0.2
3,775,784 - +0.2
3,775,784 - -0.1
3,775,784 - -1.6
3,775,784 - -1.6
3,775,784 - -0.1
3,775,785 + +0.4
3,775,785 + -0.5
3,775,785 + -1.6
3,775,785 + -0.5
3,775,785 + -0.0
3,775,785 + -0.1
3,775,785 + -0.0
3,775,785 + -0.7
3,775,785 + +0.0
3,775,785 + +0.6
3,775,785 + -0.9
3,775,785 + +0.4
3,775,785 + +0.2
3,775,785 + +0.9
3,775,786 - +0.8
3,775,786 - +1.7
3,775,786 - +0.2
3,775,786 - -0.5
3,775,786 - -0.3
3,775,786 - +0.3
3,775,786 - -0.4
3,775,786 - +0.1
3,775,786 - +0.4
3,775,786 - -0.7
3,775,786 - +0.3
3,775,786 - -0.8
3,775,786 - +1.2
3,775,786 - -0.5
3,775,786 - +0.6
3,775,786 - -0.3
3,775,786 - +0.7
3,775,880 - -0.6
3,775,912 - -0.2
3,775,944 + +0.8
3,775,944 + +0.6
3,775,945 - +0.5
3,775,952 + +0.3
3,775,952 + -0.3
3,775,952 + +0.1
3,775,958 + -0.1
3,775,958 + -0.6
3,775,958 + -0.1
3,775,959 - -0.2
3,775,959 - -1.0
3,775,966 + +0.0
3,775,967 - -0.1
3,776,048 - -0.5
3,776,071 + +1.2
3,776,071 + +1.2
3,776,071 + +0.9
3,776,072 - +0.2
3,776,072 - +0.1
3,776,072 - -0.4
3,776,072 - +0.0
3,776,072 - +0.3
3,776,072 - +0.6
3,776,073 + -0.4
3,776,078 + +0.4
3,776,078 + -0.7
3,776,078 + -0.3
3,776,078 + +0.0
3,776,078 + +1.2
3,776,079 - -1.0
3,776,079 - +0.2
3,776,079 - +0.0
3,776,146 + +0.4
3,776,298 + +1.6
3,776,337 + +0.4
3,776,338 - -1.0
3,776,393 - -0.4
3,776,393 - -0.5
3,776,393 - -1.2
3,776,394 + -0.4
3,776,395 - -0.9
3,776,419 + -0.9
3,776,419 + -1.2
3,776,450 + PFR28_03266 0.17 -0.1
3,776,450 + PFR28_03266 0.17 -1.5
3,776,450 + PFR28_03266 0.17 -0.8
3,776,450 + PFR28_03266 0.17 -1.4
3,776,451 - PFR28_03266 0.17 -1.4
3,776,451 - PFR28_03266 0.17 -0.8
3,776,451 - PFR28_03266 0.17 +0.2
3,776,826 + -0.5
3,776,826 + +0.7
3,776,826 + +0.1
3,776,827 - +0.4
3,776,827 - +0.2
3,776,827 - -0.9
3,776,839 + +0.0
3,776,839 + -0.7
3,776,839 + +0.1
3,776,839 + -1.5
3,776,840 - +0.5
3,776,840 - +0.5
3,776,840 - -0.0

Or see this region's nucleotide sequence