Strain Fitness in Pseudomonas sp. RS175 around PFR28_03203

Experiment: D-Glucose (C) 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_03202 and PFR28_03203 overlap by 4 nucleotidesPFR28_03203 and PFR28_03204 are separated by 150 nucleotides PFR28_03202: PFR28_03202 - Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase, at 3,710,029 to 3,711,084 _03202 PFR28_03203: PFR28_03203 - Bifunctional adenosylcobalamin biosynthesis protein CobP, at 3,711,081 to 3,711,602 _03203 PFR28_03204: PFR28_03204 - Cobyric acid synthase, at 3,711,753 to 3,713,204 _03204 Position (kb) 3711 3712Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 3710.337 kb on - strand, within PFR28_03202at 3710.337 kb on - strand, within PFR28_03202at 3710.860 kb on + strand, within PFR28_03202at 3710.860 kb on + strand, within PFR28_03202at 3711.093 kb on - strandat 3711.188 kb on - strand, within PFR28_03203at 3711.396 kb on + strand, within PFR28_03203at 3711.397 kb on - strand, within PFR28_03203at 3711.397 kb on - strand, within PFR28_03203at 3711.514 kb on + strand, within PFR28_03203at 3711.514 kb on + strand, within PFR28_03203at 3711.514 kb on + strand, within PFR28_03203at 3711.514 kb on + strand, within PFR28_03203at 3711.514 kb on + strand, within PFR28_03203at 3711.515 kb on - strand, within PFR28_03203at 3711.515 kb on - strand, within PFR28_03203at 3711.515 kb on - strand, within PFR28_03203at 3711.515 kb on - strand, within PFR28_03203at 3711.515 kb on - strand, within PFR28_03203at 3711.515 kb on - strand, within PFR28_03203at 3711.515 kb on - strand, within PFR28_03203at 3711.515 kb on - strand, within PFR28_03203at 3711.515 kb on - strand, within PFR28_03203at 3711.515 kb on - strand, within PFR28_03203at 3711.515 kb on - strand, within PFR28_03203at 3711.611 kb on - strandat 3711.611 kb on - strandat 3711.616 kb on + strandat 3711.616 kb on + strandat 3711.616 kb on + strandat 3711.616 kb on + strandat 3711.617 kb on - strandat 3711.617 kb on - strandat 3711.617 kb on - strandat 3711.617 kb on - strandat 3711.754 kb on + strandat 3711.754 kb on + strandat 3711.754 kb on + strandat 3711.754 kb on + strandat 3711.754 kb on + strandat 3711.754 kb on + strandat 3711.754 kb on + strandat 3711.754 kb on + strandat 3711.755 kb on - strandat 3711.755 kb on - strandat 3711.755 kb on - strandat 3711.755 kb on - strandat 3711.755 kb on - strandat 3711.755 kb on - strandat 3711.870 kb on + strandat 3711.931 kb on + strand, within PFR28_03204at 3711.931 kb on + strand, within PFR28_03204at 3711.931 kb on + strand, within PFR28_03204at 3711.931 kb on + strand, within PFR28_03204at 3711.931 kb on + strand, within PFR28_03204at 3711.932 kb on - strand, within PFR28_03204at 3711.932 kb on - strand, within PFR28_03204at 3711.932 kb on - strand, within PFR28_03204at 3711.991 kb on + strand, within PFR28_03204at 3711.991 kb on + strand, within PFR28_03204at 3711.991 kb on + strand, within PFR28_03204at 3711.991 kb on + strand, within PFR28_03204at 3712.045 kb on + strand, within PFR28_03204at 3712.091 kb on + strand, within PFR28_03204at 3712.091 kb on + strand, within PFR28_03204at 3712.092 kb on - strand, within PFR28_03204at 3712.092 kb on - strand, within PFR28_03204at 3712.092 kb on - strand, within PFR28_03204at 3712.092 kb on - strand, within PFR28_03204at 3712.092 kb on - strand, within PFR28_03204at 3712.291 kb on + strand, within PFR28_03204at 3712.291 kb on + strand, within PFR28_03204at 3712.292 kb on - strand, within PFR28_03204at 3712.531 kb on + strand, within PFR28_03204at 3712.531 kb on + strand, within PFR28_03204at 3712.532 kb on - strand, within PFR28_03204at 3712.532 kb on - strand, within PFR28_03204

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C) 10 mM
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3,710,337 - PFR28_03202 0.29 -1.1
3,710,337 - PFR28_03202 0.29 -2.3
3,710,860 + PFR28_03202 0.79 -0.8
3,710,860 + PFR28_03202 0.79 -0.3
3,711,093 - -0.3
3,711,188 - PFR28_03203 0.20 -1.3
3,711,396 + PFR28_03203 0.60 +1.2
3,711,397 - PFR28_03203 0.61 -0.4
3,711,397 - PFR28_03203 0.61 -0.6
3,711,514 + PFR28_03203 0.83 -1.0
3,711,514 + PFR28_03203 0.83 -1.0
3,711,514 + PFR28_03203 0.83 -1.6
3,711,514 + PFR28_03203 0.83 -0.3
3,711,514 + PFR28_03203 0.83 -0.9
3,711,515 - PFR28_03203 0.83 -0.2
3,711,515 - PFR28_03203 0.83 -0.8
3,711,515 - PFR28_03203 0.83 -1.1
3,711,515 - PFR28_03203 0.83 -0.8
3,711,515 - PFR28_03203 0.83 -1.0
3,711,515 - PFR28_03203 0.83 -0.6
3,711,515 - PFR28_03203 0.83 -2.0
3,711,515 - PFR28_03203 0.83 -0.1
3,711,515 - PFR28_03203 0.83 -4.1
3,711,515 - PFR28_03203 0.83 -1.6
3,711,515 - PFR28_03203 0.83 -0.7
3,711,611 - +0.3
3,711,611 - -0.7
3,711,616 + +0.3
3,711,616 + -0.8
3,711,616 + -0.7
3,711,616 + +0.8
3,711,617 - -0.8
3,711,617 - -0.2
3,711,617 - -1.3
3,711,617 - -2.3
3,711,754 + +0.6
3,711,754 + -1.1
3,711,754 + -0.3
3,711,754 + +0.3
3,711,754 + -0.5
3,711,754 + +0.6
3,711,754 + -0.2
3,711,754 + -0.2
3,711,755 - +0.8
3,711,755 - +0.2
3,711,755 - +0.7
3,711,755 - +0.9
3,711,755 - -0.8
3,711,755 - -0.1
3,711,870 + +0.2
3,711,931 + PFR28_03204 0.12 +0.2
3,711,931 + PFR28_03204 0.12 -1.8
3,711,931 + PFR28_03204 0.12 -0.1
3,711,931 + PFR28_03204 0.12 -0.0
3,711,931 + PFR28_03204 0.12 +0.4
3,711,932 - PFR28_03204 0.12 -1.0
3,711,932 - PFR28_03204 0.12 -0.1
3,711,932 - PFR28_03204 0.12 -1.4
3,711,991 + PFR28_03204 0.16 -2.0
3,711,991 + PFR28_03204 0.16 +1.2
3,711,991 + PFR28_03204 0.16 -1.6
3,711,991 + PFR28_03204 0.16 +0.6
3,712,045 + PFR28_03204 0.20 -2.7
3,712,091 + PFR28_03204 0.23 -0.9
3,712,091 + PFR28_03204 0.23 -0.1
3,712,092 - PFR28_03204 0.23 -0.5
3,712,092 - PFR28_03204 0.23 +0.2
3,712,092 - PFR28_03204 0.23 -1.2
3,712,092 - PFR28_03204 0.23 -1.0
3,712,092 - PFR28_03204 0.23 -0.1
3,712,291 + PFR28_03204 0.37 +0.5
3,712,291 + PFR28_03204 0.37 -1.0
3,712,292 - PFR28_03204 0.37 -2.4
3,712,531 + PFR28_03204 0.54 -1.8
3,712,531 + PFR28_03204 0.54 +0.4
3,712,532 - PFR28_03204 0.54 -2.3
3,712,532 - PFR28_03204 0.54 -0.8

Or see this region's nucleotide sequence