Strain Fitness in Pseudomonas sp. RS175 around PFR28_02838

Experiment: D-Glucose (C) 10 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Glucose (C) 10 mM
3,311,295	+		PFR28_02837	0.70	-0.3
3,311,295	+		PFR28_02837	0.70	+0.4
3,311,295	+		PFR28_02837	0.70	+0.2
3,311,296	-		PFR28_02837	0.70	+0.4
3,311,296	-		PFR28_02837	0.70	-0.3
3,311,296	-		PFR28_02837	0.70	+1.0
3,311,296	-		PFR28_02837	0.70	-0.2
3,311,296	-		PFR28_02837	0.70	-1.2
3,311,296	-		PFR28_02837	0.70	-0.4
3,311,361	+		PFR28_02837	0.73	-0.4
3,311,361	+		PFR28_02837	0.73	-1.2
3,311,362	-		PFR28_02837	0.73	+0.3
3,311,362	-		PFR28_02837	0.73	+0.4
3,311,362	-		PFR28_02837	0.73	+0.1
3,311,362	-		PFR28_02837	0.73	+0.9
3,311,362	-		PFR28_02837	0.73	+0.2
3,311,362	-		PFR28_02837	0.73	-0.2
3,311,362	-		PFR28_02837	0.73	-0.8
3,311,362	-		PFR28_02837	0.73	+0.3
3,311,442	+		PFR28_02837	0.77	+0.8
3,311,443	-		PFR28_02837	0.77	-0.4
3,311,466	+		PFR28_02837	0.78	-0.3
3,311,466	+		PFR28_02837	0.78	+0.2
3,311,466	+		PFR28_02837	0.78	-0.6
3,311,466	+		PFR28_02837	0.78	-1.7
3,311,466	+		PFR28_02837	0.78	+0.2
3,311,467	-		PFR28_02837	0.79	-0.3
3,311,467	-		PFR28_02837	0.79	+1.0
3,311,467	-		PFR28_02837	0.79	+0.1
3,311,467	-		PFR28_02837	0.79	-0.4
3,311,467	-		PFR28_02837	0.79	-0.1
3,311,467	-		PFR28_02837	0.79	+0.3
3,311,601	+		PFR28_02837	0.85	-1.0
3,311,601	+		PFR28_02837	0.85	+1.1
3,311,601	+		PFR28_02837	0.85	+0.2
3,311,601	+		PFR28_02837	0.85	-0.7
3,311,601	+		PFR28_02837	0.85	-0.8
3,311,601	+		PFR28_02837	0.85	-1.4
3,311,601	+		PFR28_02837	0.85	-0.5
3,311,601	+		PFR28_02837	0.85	+0.2
3,311,601	+		PFR28_02837	0.85	+0.4
3,311,601	+		PFR28_02837	0.85	+0.4
3,311,602	-		PFR28_02837	0.85	-1.2
3,311,602	-		PFR28_02837	0.85	+0.5
3,311,602	-		PFR28_02837	0.85	+0.0
3,311,602	-		PFR28_02837	0.85	+0.9
3,311,602	-		PFR28_02837	0.85	-1.0
3,311,602	-		PFR28_02837	0.85	+1.2
3,311,616	+		PFR28_02837	0.86	+0.1
3,311,616	+		PFR28_02837	0.86	+0.2
3,311,617	-		PFR28_02837	0.86	-0.7
3,311,619	+		PFR28_02837	0.86	-0.5
3,311,619	+		PFR28_02837	0.86	+0.6
3,311,619	+		PFR28_02837	0.86	-0.4
3,311,620	-		PFR28_02837	0.86	+1.6
3,311,620	-		PFR28_02837	0.86	-1.8
3,311,625	+		PFR28_02837	0.86	-0.4
3,311,625	+		PFR28_02837	0.86	-0.4
3,311,625	+		PFR28_02837	0.86	+0.2
3,311,625	+		PFR28_02837	0.86	+0.2
3,311,625	+		PFR28_02837	0.86	-0.8
3,311,625	+		PFR28_02837	0.86	+0.2
3,311,625	+		PFR28_02837	0.86	+0.2
3,311,626	-		PFR28_02837	0.86	-0.6
3,311,626	-		PFR28_02837	0.86	-0.1
3,311,628	+		PFR28_02837	0.87	-0.5
3,311,629	-		PFR28_02837	0.87	+0.6
3,311,640	+		PFR28_02837	0.87	+0.7
3,311,640	+		PFR28_02837	0.87	+0.8
3,311,640	+		PFR28_02837	0.87	+1.3
3,311,640	+		PFR28_02837	0.87	-0.7
3,311,640	+		PFR28_02837	0.87	+0.1
3,311,640	+		PFR28_02837	0.87	-0.1
3,311,641	-		PFR28_02837	0.87	+1.2
3,311,641	-		PFR28_02837	0.87	-0.1
3,311,641	-		PFR28_02837	0.87	+0.2
3,311,641	-		PFR28_02837	0.87	-0.3
3,311,682	+		PFR28_02837	0.89	+0.1
3,311,682	+		PFR28_02837	0.89	-0.1
3,311,683	-		PFR28_02837	0.89	+0.2
3,311,683	-		PFR28_02837	0.89	-0.0
3,311,683	-		PFR28_02837	0.89	+0.5
3,311,683	-		PFR28_02837	0.89	-0.8
3,311,683	-		PFR28_02837	0.89	-1.4
3,311,717	+				-2.2
3,311,718	-				+0.7
3,311,718	-				-0.2
3,311,904	+				-2.9
3,311,904	+				-0.6
3,311,904	+				-0.4
3,311,904	+				-0.8
3,311,904	+				+0.0
3,311,904	+				-0.1
3,311,904	+				+0.4
3,311,905	-				-0.4
3,311,905	-				+0.3
3,311,905	-				-0.5
3,311,905	-				-0.4
3,311,905	-				+0.5
3,312,095	+				+0.4
3,312,095	+				-0.1
3,312,095	+				-0.2
3,312,095	+				-0.1
3,312,096	-				+0.8
3,312,096	-				+0.5
3,312,105	-				+0.2
3,312,105	-				-1.8
3,312,145	+				+0.0
3,312,145	+				+0.8
3,312,146	-				-0.8
3,312,146	-				-1.1
3,312,147	+				-1.4
3,312,147	+				-1.1
3,312,147	+				-0.3
3,312,147	+				-0.8
3,312,147	+				-0.0
3,312,147	+				-0.2
3,312,148	-				-1.4
3,312,148	-				-3.6
3,312,148	-				-2.5
3,312,148	-				-1.2
3,312,148	-				-1.6
3,312,150	+				-0.6
3,312,150	+				-0.3
3,312,150	+				-0.1
3,312,150	+				-1.3
3,312,150	+				-1.1
3,312,150	+				+1.2
3,312,150	+				-0.2
3,312,150	+				-0.8
3,312,150	+				-0.0
3,312,151	-				-3.8
3,312,151	-				-0.7
3,312,151	-				-1.0
3,312,151	-				-3.1
3,312,151	-				-2.3
3,312,151	-				-1.3
3,312,151	-				-0.8
3,312,151	-				-1.0
3,312,151	-				-0.7
3,312,174	+				-0.6
3,312,209	+				-0.8
3,312,209	+				-0.3
3,312,209	+				-0.6
3,312,209	+				-0.4
3,312,210	-				-0.4
3,312,210	-				-2.0
3,312,210	-				-2.2
3,312,210	-				-2.0
3,312,231	+				-1.7
3,312,336	+				-1.1
3,312,336	+				-3.2
3,312,336	+				-2.8
3,312,344	+				-1.6
3,312,344	+				-2.8
3,312,345	-				-1.8
3,312,345	-				-3.5
3,312,345	-				-2.3
3,312,364	+		PFR28_02838	0.11	-1.2
3,312,365	-		PFR28_02838	0.11	-1.7
3,312,365	-		PFR28_02838	0.11	-1.4
3,312,431	+		PFR28_02838	0.17	-2.3
3,312,431	+		PFR28_02838	0.17	-1.9
3,312,458	+		PFR28_02838	0.19	+0.6
3,312,458	+		PFR28_02838	0.19	-1.9
3,312,459	-		PFR28_02838	0.19	-3.2
3,312,677	+		PFR28_02838	0.37	-1.5
3,312,678	-		PFR28_02838	0.37	-2.4
3,312,678	-		PFR28_02838	0.37	-2.2
3,312,678	-		PFR28_02838	0.37	-2.5
3,312,678	-		PFR28_02838	0.37	-1.4
3,312,684	-		PFR28_02838	0.38	-2.2
3,312,686	+		PFR28_02838	0.38	-2.2
3,312,686	+		PFR28_02838	0.38	-2.7
3,312,686	+		PFR28_02838	0.38	-1.3
3,312,687	-		PFR28_02838	0.38	-1.8
3,312,687	-		PFR28_02838	0.38	-1.8
3,313,085	+		PFR28_02838	0.71	-2.2
3,313,085	+		PFR28_02838	0.71	-2.3
3,313,085	+		PFR28_02838	0.71	-2.9
3,313,085	+		PFR28_02838	0.71	-2.8
3,313,086	-		PFR28_02838	0.71	-0.5
3,313,086	-		PFR28_02838	0.71	-0.7
3,313,086	-		PFR28_02838	0.71	-2.9
3,313,086	-		PFR28_02838	0.71	-2.5
3,313,086	-		PFR28_02838	0.71	-1.5
3,313,091	-		PFR28_02838	0.72	-1.4
3,313,091	-		PFR28_02838	0.72	+0.3
3,313,276	+		PFR28_02838	0.87	-2.0
3,313,277	-		PFR28_02838	0.87	-2.8
3,313,277	-		PFR28_02838	0.87	-1.3
3,313,287	-		PFR28_02838	0.88	-2.6
3,313,287	-		PFR28_02838	0.88	-1.8
3,313,337	-				-1.8
3,313,340	+				-2.1
3,313,340	+				-2.2
3,313,341	-				-0.7
3,313,341	-				-1.3
3,313,341	-				-2.0
3,313,341	-				-2.4
3,313,341	-				-1.7
3,313,341	-				-2.4
3,313,341	-				-0.0
3,313,341	-				-1.5
3,313,425	+				-0.2
3,313,425	+				+0.2
3,313,425	+				-0.4
3,313,425	+				-0.6
3,313,425	+				+0.3
3,313,425	+				+0.7
3,313,426	-				-1.8
3,313,426	-				+0.4
3,313,426	-				-1.0
3,313,512	-				-0.4
3,313,528	+				+0.1
3,313,529	-				-0.2
3,313,660	-		PFR28_02839	0.47	+0.6
3,313,767	+				+0.7
3,313,767	+				+0.0
3,313,768	-				-1.0
3,313,820	+				+1.5
3,313,820	+				-0.2
3,313,820	+				+0.0
3,313,820	+				+1.2
3,313,873	-				-0.1
3,313,970	+				+0.2
3,313,970	+				+0.5
3,313,970	+				+1.3
3,313,970	+				+1.0
3,313,970	+				+0.6
3,313,970	+				+0.9
3,313,970	+				-0.8
3,313,971	-				+0.3
3,313,971	-				+0.6
3,313,971	-				+0.7
3,313,988	+				-0.4
3,313,988	+				+0.6
3,313,988	+				+4.0
3,313,988	+				-0.6
3,313,988	+				+0.6
3,313,989	-				-0.0
3,313,989	-				-0.3
3,313,989	-				+0.5
3,313,989	-				-0.2
3,313,989	-				-0.0
3,313,989	-				+0.9
3,313,989	-				-0.2
3,314,043	+		PFR28_02840	0.28	+0.3
3,314,043	+		PFR28_02840	0.28	+0.1
3,314,043	+		PFR28_02840	0.28	+0.5
3,314,043	+		PFR28_02840	0.28	-0.2
3,314,043	+		PFR28_02840	0.28	-0.4
3,314,043	+		PFR28_02840	0.28	+0.7
3,314,043	+		PFR28_02840	0.28	+0.1
3,314,043	+		PFR28_02840	0.28	-0.4
3,314,043	+		PFR28_02840	0.28	-0.0
3,314,043	+		PFR28_02840	0.28	-0.4
3,314,043	+		PFR28_02840	0.28	+0.3
3,314,043	+		PFR28_02840	0.28	-0.0
3,314,043	+		PFR28_02840	0.28	+0.4
3,314,044	-		PFR28_02840	0.28	+0.1
3,314,044	-		PFR28_02840	0.28	-0.0
3,314,044	-		PFR28_02840	0.28	-0.4
3,314,044	-		PFR28_02840	0.28	+0.5
3,314,044	-		PFR28_02840	0.28	+0.6
3,314,044	-		PFR28_02840	0.28	-0.8
3,314,044	-		PFR28_02840	0.28	-0.4
3,314,044	-		PFR28_02840	0.28	-0.6
3,314,044	-		PFR28_02840	0.28	+0.0
3,314,044	-		PFR28_02840	0.28	+0.3
3,314,045	+		PFR28_02840	0.29	-0.7
3,314,045	+		PFR28_02840	0.29	-0.2
3,314,045	+		PFR28_02840	0.29	+0.7
3,314,045	+		PFR28_02840	0.29	+0.4
3,314,045	+		PFR28_02840	0.29	-2.0
3,314,046	-		PFR28_02840	0.29	-0.3
3,314,046	-		PFR28_02840	0.29	+0.5
3,314,046	-		PFR28_02840	0.29	+0.8
3,314,046	-		PFR28_02840	0.29	-1.3
3,314,134	+		PFR28_02840	0.74	-0.2
3,314,134	+		PFR28_02840	0.74	-0.3
3,314,159	+		PFR28_02840	0.87	+0.3
3,314,159	+		PFR28_02840	0.87	+0.8
3,314,159	+		PFR28_02840	0.87	-0.7
3,314,159	+		PFR28_02840	0.87	-0.0
3,314,159	+		PFR28_02840	0.87	-0.6
3,314,159	+		PFR28_02840	0.87	+0.7
3,314,159	+		PFR28_02840	0.87	-1.2
3,314,159	+		PFR28_02840	0.87	+2.2
3,314,160	-		PFR28_02840	0.88	+0.2
3,314,160	-		PFR28_02840	0.88	-0.8
3,314,160	-		PFR28_02840	0.88	-0.4
3,314,160	-		PFR28_02840	0.88	+0.5
3,314,160	-		PFR28_02840	0.88	+0.3
3,314,160	-		PFR28_02840	0.88	+0.2
3,314,160	-		PFR28_02840	0.88	+1.2
3,314,160	-		PFR28_02840	0.88	+0.0
3,314,160	-		PFR28_02840	0.88	-0.2
3,314,160	-		PFR28_02840	0.88	-0.9
3,314,160	-		PFR28_02840	0.88	+0.8
3,314,160	-		PFR28_02840	0.88	-0.6
3,314,160	-		PFR28_02840	0.88	-0.7
3,314,160	-		PFR28_02840	0.88	-0.5
3,314,160	-		PFR28_02840	0.88	-1.4
3,314,160	-		PFR28_02840	0.88	-2.5
3,314,160	-		PFR28_02840	0.88	+0.9
3,314,160	-		PFR28_02840	0.88	-1.2
3,314,160	-		PFR28_02840	0.88	-0.3
3,314,160	-		PFR28_02840	0.88	-0.8
3,314,160	-		PFR28_02840	0.88	-0.8
3,314,198	+				+0.1
3,314,198	+				+0.8
3,314,198	+				-0.2
3,314,198	+				-0.2
3,314,198	+				+0.4
3,314,199	-				-0.8
3,314,199	-				-0.2
3,314,240	+				+1.7
3,314,240	+				-2.4
3,314,240	+				-0.4
3,314,245	+				-0.4
3,314,245	+				+0.6
3,314,245	+				+0.8
3,314,246	-				-0.6
3,314,246	-				+0.4
3,314,246	-				-0.2
3,314,246	-				-0.6
3,314,246	-				+0.9
3,314,246	-				+0.2
3,314,355	-		PFR28_02841	0.45	-0.1