Experiment: D-Glucose (C) 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFR28_01854 and PFR28_01855 are separated by 50 nucleotides PFR28_01855 and PFR28_01856 are separated by 516 nucleotides
PFR28_01853: PFR28_01853 - Trehalose synthase/amylase TreS, at 2,081,518 to 2,083,158
_01853
PFR28_01854: PFR28_01854 - hypothetical protein, at 2,083,111 to 2,084,094
_01854
PFR28_01855: PFR28_01855 - Hypoxic response protein 1, at 2,084,145 to 2,084,558
_01855
PFR28_01856: PFR28_01856 - Nitrite reductase [NAD(P)H], at 2,085,075 to 2,087,660
_01856
Position (kb)
2084
2085 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2083.156 kb on + strand at 2083.157 kb on - strand at 2083.360 kb on - strand, within PFR28_01854 at 2083.417 kb on + strand, within PFR28_01854 at 2083.418 kb on - strand, within PFR28_01854 at 2083.495 kb on - strand, within PFR28_01854 at 2083.752 kb on - strand, within PFR28_01854 at 2083.752 kb on - strand, within PFR28_01854 at 2083.752 kb on - strand, within PFR28_01854 at 2083.752 kb on - strand, within PFR28_01854 at 2084.254 kb on - strand, within PFR28_01855 at 2084.642 kb on + strand at 2084.642 kb on + strand at 2084.642 kb on + strand at 2084.642 kb on + strand at 2084.643 kb on - strand at 2084.643 kb on - strand at 2084.643 kb on - strand at 2084.694 kb on + strand at 2084.694 kb on + strand at 2084.694 kb on + strand at 2084.694 kb on + strand at 2084.695 kb on - strand at 2084.706 kb on + strand at 2084.706 kb on + strand at 2084.707 kb on - strand at 2084.968 kb on + strand at 2084.968 kb on + strand at 2084.968 kb on + strand at 2084.968 kb on + strand at 2085.096 kb on + strand at 2085.096 kb on + strand at 2085.096 kb on + strand at 2085.096 kb on + strand at 2085.096 kb on + strand at 2085.096 kb on + strand at 2085.097 kb on - strand at 2085.097 kb on - strand at 2085.097 kb on - strand at 2085.097 kb on - strand at 2085.097 kb on - strand at 2085.097 kb on - strand at 2085.097 kb on - strand at 2085.097 kb on - strand at 2085.097 kb on - strand at 2085.097 kb on - strand at 2085.097 kb on - strand at 2085.098 kb on + strand at 2085.098 kb on + strand at 2085.098 kb on + strand at 2085.098 kb on + strand at 2085.098 kb on + strand at 2085.099 kb on - strand at 2085.099 kb on - strand at 2085.423 kb on + strand, within PFR28_01856 at 2085.436 kb on + strand, within PFR28_01856 at 2085.504 kb on + strand, within PFR28_01856 at 2085.504 kb on + strand, within PFR28_01856
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C) 10 mM remove 2,083,156 + -0.9 2,083,157 - +0.8 2,083,360 - PFR28_01854 0.25 +0.1 2,083,417 + PFR28_01854 0.31 -0.1 2,083,418 - PFR28_01854 0.31 -1.3 2,083,495 - PFR28_01854 0.39 -0.3 2,083,752 - PFR28_01854 0.65 -0.5 2,083,752 - PFR28_01854 0.65 -0.2 2,083,752 - PFR28_01854 0.65 -0.4 2,083,752 - PFR28_01854 0.65 +0.5 2,084,254 - PFR28_01855 0.26 -0.8 2,084,642 + -0.9 2,084,642 + -0.4 2,084,642 + -0.5 2,084,642 + -0.3 2,084,643 - -0.4 2,084,643 - +0.6 2,084,643 - +0.1 2,084,694 + +0.3 2,084,694 + -0.3 2,084,694 + +0.4 2,084,694 + +0.1 2,084,695 - -0.0 2,084,706 + +0.7 2,084,706 + +1.1 2,084,707 - -0.2 2,084,968 + -0.2 2,084,968 + -1.0 2,084,968 + +1.5 2,084,968 + -1.0 2,085,096 + +0.3 2,085,096 + -0.1 2,085,096 + +0.7 2,085,096 + +0.7 2,085,096 + +0.3 2,085,096 + +0.0 2,085,097 - +0.2 2,085,097 - -0.2 2,085,097 - -1.6 2,085,097 - +0.2 2,085,097 - -0.3 2,085,097 - +0.1 2,085,097 - +0.4 2,085,097 - +0.7 2,085,097 - -0.2 2,085,097 - -1.1 2,085,097 - +0.5 2,085,098 + -2.3 2,085,098 + -0.0 2,085,098 + -0.2 2,085,098 + +2.1 2,085,098 + +0.1 2,085,099 - +0.7 2,085,099 - +0.2 2,085,423 + PFR28_01856 0.13 +0.4 2,085,436 + PFR28_01856 0.14 -0.6 2,085,504 + PFR28_01856 0.17 -0.1 2,085,504 + PFR28_01856 0.17 +0.1
Or see this region's nucleotide sequence