Strain Fitness in Pseudomonas sp. RS175 around PFR28_01855

Experiment: D-Glucose (C) 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_01854 and PFR28_01855 are separated by 50 nucleotidesPFR28_01855 and PFR28_01856 are separated by 516 nucleotides PFR28_01853: PFR28_01853 - Trehalose synthase/amylase TreS, at 2,081,518 to 2,083,158 _01853 PFR28_01854: PFR28_01854 - hypothetical protein, at 2,083,111 to 2,084,094 _01854 PFR28_01855: PFR28_01855 - Hypoxic response protein 1, at 2,084,145 to 2,084,558 _01855 PFR28_01856: PFR28_01856 - Nitrite reductase [NAD(P)H], at 2,085,075 to 2,087,660 _01856 Position (kb) 2084 2085Strain fitness (log2 ratio) -2 -1 0 1 2at 2083.156 kb on + strandat 2083.157 kb on - strandat 2083.360 kb on - strand, within PFR28_01854at 2083.417 kb on + strand, within PFR28_01854at 2083.418 kb on - strand, within PFR28_01854at 2083.495 kb on - strand, within PFR28_01854at 2083.752 kb on - strand, within PFR28_01854at 2083.752 kb on - strand, within PFR28_01854at 2083.752 kb on - strand, within PFR28_01854at 2083.752 kb on - strand, within PFR28_01854at 2084.254 kb on - strand, within PFR28_01855at 2084.642 kb on + strandat 2084.642 kb on + strandat 2084.642 kb on + strandat 2084.642 kb on + strandat 2084.643 kb on - strandat 2084.643 kb on - strandat 2084.643 kb on - strandat 2084.694 kb on + strandat 2084.694 kb on + strandat 2084.694 kb on + strandat 2084.694 kb on + strandat 2084.695 kb on - strandat 2084.706 kb on + strandat 2084.706 kb on + strandat 2084.707 kb on - strandat 2084.968 kb on + strandat 2084.968 kb on + strandat 2084.968 kb on + strandat 2084.968 kb on + strandat 2085.096 kb on + strandat 2085.096 kb on + strandat 2085.096 kb on + strandat 2085.096 kb on + strandat 2085.096 kb on + strandat 2085.096 kb on + strandat 2085.097 kb on - strandat 2085.097 kb on - strandat 2085.097 kb on - strandat 2085.097 kb on - strandat 2085.097 kb on - strandat 2085.097 kb on - strandat 2085.097 kb on - strandat 2085.097 kb on - strandat 2085.097 kb on - strandat 2085.097 kb on - strandat 2085.097 kb on - strandat 2085.098 kb on + strandat 2085.098 kb on + strandat 2085.098 kb on + strandat 2085.098 kb on + strandat 2085.098 kb on + strandat 2085.099 kb on - strandat 2085.099 kb on - strandat 2085.423 kb on + strand, within PFR28_01856at 2085.436 kb on + strand, within PFR28_01856at 2085.504 kb on + strand, within PFR28_01856at 2085.504 kb on + strand, within PFR28_01856

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C) 10 mM
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2,083,156 + -0.9
2,083,157 - +0.8
2,083,360 - PFR28_01854 0.25 +0.1
2,083,417 + PFR28_01854 0.31 -0.1
2,083,418 - PFR28_01854 0.31 -1.3
2,083,495 - PFR28_01854 0.39 -0.3
2,083,752 - PFR28_01854 0.65 -0.5
2,083,752 - PFR28_01854 0.65 -0.2
2,083,752 - PFR28_01854 0.65 -0.4
2,083,752 - PFR28_01854 0.65 +0.5
2,084,254 - PFR28_01855 0.26 -0.8
2,084,642 + -0.9
2,084,642 + -0.4
2,084,642 + -0.5
2,084,642 + -0.3
2,084,643 - -0.4
2,084,643 - +0.6
2,084,643 - +0.1
2,084,694 + +0.3
2,084,694 + -0.3
2,084,694 + +0.4
2,084,694 + +0.1
2,084,695 - -0.0
2,084,706 + +0.7
2,084,706 + +1.1
2,084,707 - -0.2
2,084,968 + -0.2
2,084,968 + -1.0
2,084,968 + +1.5
2,084,968 + -1.0
2,085,096 + +0.3
2,085,096 + -0.1
2,085,096 + +0.7
2,085,096 + +0.7
2,085,096 + +0.3
2,085,096 + +0.0
2,085,097 - +0.2
2,085,097 - -0.2
2,085,097 - -1.6
2,085,097 - +0.2
2,085,097 - -0.3
2,085,097 - +0.1
2,085,097 - +0.4
2,085,097 - +0.7
2,085,097 - -0.2
2,085,097 - -1.1
2,085,097 - +0.5
2,085,098 + -2.3
2,085,098 + -0.0
2,085,098 + -0.2
2,085,098 + +2.1
2,085,098 + +0.1
2,085,099 - +0.7
2,085,099 - +0.2
2,085,423 + PFR28_01856 0.13 +0.4
2,085,436 + PFR28_01856 0.14 -0.6
2,085,504 + PFR28_01856 0.17 -0.1
2,085,504 + PFR28_01856 0.17 +0.1

Or see this region's nucleotide sequence