Strain Fitness in Pseudomonas sp. RS175 around PFR28_01312

Experiment: D-Glucose (C) 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_01310 and PFR28_01311 are separated by 76 nucleotidesPFR28_01311 and PFR28_01312 are separated by 63 nucleotidesPFR28_01312 and PFR28_01313 are separated by 84 nucleotides PFR28_01310: PFR28_01310 - Dye-decolorizing peroxidase YfeX, at 1,423,565 to 1,424,443 _01310 PFR28_01311: PFR28_01311 - putative oxidoreductase YgfF, at 1,424,520 to 1,425,266 _01311 PFR28_01312: PFR28_01312 - HTH-type transcriptional regulator NorG, at 1,425,330 to 1,426,739 _01312 PFR28_01313: PFR28_01313 - hypothetical protein, at 1,426,824 to 1,428,236 _01313 Position (kb) 1425 1426 1427Strain fitness (log2 ratio) -2 -1 0 1 2at 1424.384 kb on + strandat 1424.387 kb on + strandat 1424.387 kb on + strandat 1424.387 kb on + strandat 1424.387 kb on + strandat 1424.388 kb on - strandat 1424.388 kb on - strandat 1424.388 kb on - strandat 1424.388 kb on - strandat 1424.388 kb on - strandat 1424.441 kb on + strandat 1424.478 kb on + strandat 1424.479 kb on - strandat 1424.479 kb on - strandat 1424.497 kb on + strandat 1424.526 kb on - strandat 1424.617 kb on - strand, within PFR28_01311at 1424.617 kb on - strand, within PFR28_01311at 1424.617 kb on - strand, within PFR28_01311at 1424.979 kb on + strand, within PFR28_01311at 1424.979 kb on + strand, within PFR28_01311at 1424.979 kb on + strand, within PFR28_01311at 1424.979 kb on + strand, within PFR28_01311at 1424.980 kb on - strand, within PFR28_01311at 1424.988 kb on + strand, within PFR28_01311at 1424.989 kb on - strand, within PFR28_01311at 1425.084 kb on + strand, within PFR28_01311at 1425.086 kb on + strand, within PFR28_01311at 1425.086 kb on + strand, within PFR28_01311at 1425.086 kb on + strand, within PFR28_01311at 1425.086 kb on + strand, within PFR28_01311at 1425.086 kb on + strand, within PFR28_01311at 1425.086 kb on + strand, within PFR28_01311at 1425.086 kb on + strand, within PFR28_01311at 1425.086 kb on + strand, within PFR28_01311at 1425.086 kb on + strand, within PFR28_01311at 1425.086 kb on + strand, within PFR28_01311at 1425.086 kb on + strand, within PFR28_01311at 1425.086 kb on + strand, within PFR28_01311at 1425.086 kb on + strand, within PFR28_01311at 1425.086 kb on + strand, within PFR28_01311at 1425.086 kb on + strand, within PFR28_01311at 1425.086 kb on + strand, within PFR28_01311at 1425.086 kb on + strand, within PFR28_01311at 1425.086 kb on + strand, within PFR28_01311at 1425.086 kb on + strand, within PFR28_01311at 1425.086 kb on + strand, within PFR28_01311at 1425.087 kb on - strand, within PFR28_01311at 1425.087 kb on - strand, within PFR28_01311at 1425.087 kb on - strand, within PFR28_01311at 1425.087 kb on - strand, within PFR28_01311at 1425.087 kb on - strand, within PFR28_01311at 1425.087 kb on - strand, within PFR28_01311at 1425.087 kb on - strand, within PFR28_01311at 1425.087 kb on - strand, within PFR28_01311at 1425.087 kb on - strand, within PFR28_01311at 1425.087 kb on - strand, within PFR28_01311at 1425.087 kb on - strand, within PFR28_01311at 1425.087 kb on - strand, within PFR28_01311at 1425.087 kb on - strand, within PFR28_01311at 1425.087 kb on - strand, within PFR28_01311at 1425.087 kb on - strand, within PFR28_01311at 1425.087 kb on - strand, within PFR28_01311at 1425.087 kb on - strand, within PFR28_01311at 1425.087 kb on - strand, within PFR28_01311at 1425.087 kb on - strand, within PFR28_01311at 1425.087 kb on - strand, within PFR28_01311at 1425.087 kb on - strand, within PFR28_01311at 1425.087 kb on - strand, within PFR28_01311at 1425.087 kb on - strand, within PFR28_01311at 1425.090 kb on + strand, within PFR28_01311at 1425.090 kb on + strand, within PFR28_01311at 1425.090 kb on + strand, within PFR28_01311at 1425.090 kb on + strand, within PFR28_01311at 1425.090 kb on + strand, within PFR28_01311at 1425.090 kb on + strand, within PFR28_01311at 1425.090 kb on + strand, within PFR28_01311at 1425.090 kb on + strand, within PFR28_01311at 1425.090 kb on + strand, within PFR28_01311at 1425.090 kb on + strand, within PFR28_01311at 1425.090 kb on + strand, within PFR28_01311at 1425.090 kb on + strand, within PFR28_01311at 1425.090 kb on + strand, within PFR28_01311at 1425.091 kb on - strand, within PFR28_01311at 1425.091 kb on - strand, within PFR28_01311at 1425.091 kb on - strand, within PFR28_01311at 1425.091 kb on - strand, within PFR28_01311at 1425.091 kb on - strand, within PFR28_01311at 1425.091 kb on - strand, within PFR28_01311at 1425.091 kb on - strand, within PFR28_01311at 1425.225 kb on + strandat 1425.225 kb on + strandat 1425.316 kb on - strandat 1425.401 kb on - strandat 1425.538 kb on + strand, within PFR28_01312at 1425.539 kb on - strand, within PFR28_01312at 1425.673 kb on + strand, within PFR28_01312at 1425.674 kb on - strand, within PFR28_01312at 1425.878 kb on - strand, within PFR28_01312at 1425.936 kb on + strand, within PFR28_01312at 1425.936 kb on + strand, within PFR28_01312at 1426.129 kb on + strand, within PFR28_01312at 1426.262 kb on - strand, within PFR28_01312at 1426.262 kb on - strand, within PFR28_01312at 1426.262 kb on - strand, within PFR28_01312at 1426.549 kb on + strand, within PFR28_01312at 1426.597 kb on + strand, within PFR28_01312at 1426.598 kb on - strand, within PFR28_01312at 1426.600 kb on + strandat 1426.601 kb on - strandat 1426.633 kb on + strandat 1426.634 kb on - strandat 1426.634 kb on - strandat 1426.634 kb on - strandat 1426.654 kb on - strandat 1426.817 kb on + strandat 1426.818 kb on - strandat 1426.960 kb on - strandat 1427.086 kb on + strand, within PFR28_01313at 1427.086 kb on + strand, within PFR28_01313at 1427.086 kb on + strand, within PFR28_01313at 1427.086 kb on + strand, within PFR28_01313at 1427.086 kb on + strand, within PFR28_01313at 1427.086 kb on + strand, within PFR28_01313at 1427.086 kb on + strand, within PFR28_01313at 1427.086 kb on + strand, within PFR28_01313at 1427.086 kb on + strand, within PFR28_01313at 1427.087 kb on - strand, within PFR28_01313at 1427.087 kb on - strand, within PFR28_01313at 1427.087 kb on - strand, within PFR28_01313at 1427.087 kb on - strand, within PFR28_01313at 1427.282 kb on - strand, within PFR28_01313at 1427.282 kb on - strand, within PFR28_01313at 1427.558 kb on - strand, within PFR28_01313at 1427.704 kb on + strand, within PFR28_01313

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C) 10 mM
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1,424,384 + -0.0
1,424,387 + +0.4
1,424,387 + -0.9
1,424,387 + -1.9
1,424,387 + +0.4
1,424,388 - -0.4
1,424,388 - -0.0
1,424,388 - -0.3
1,424,388 - +0.8
1,424,388 - +0.2
1,424,441 + -0.6
1,424,478 + +0.6
1,424,479 - +1.6
1,424,479 - +0.3
1,424,497 + -0.8
1,424,526 - -0.0
1,424,617 - PFR28_01311 0.13 -0.7
1,424,617 - PFR28_01311 0.13 -0.2
1,424,617 - PFR28_01311 0.13 +0.5
1,424,979 + PFR28_01311 0.61 -1.6
1,424,979 + PFR28_01311 0.61 +0.2
1,424,979 + PFR28_01311 0.61 +0.1
1,424,979 + PFR28_01311 0.61 -0.2
1,424,980 - PFR28_01311 0.62 +1.0
1,424,988 + PFR28_01311 0.63 -0.3
1,424,989 - PFR28_01311 0.63 -0.4
1,425,084 + PFR28_01311 0.76 +0.1
1,425,086 + PFR28_01311 0.76 +0.0
1,425,086 + PFR28_01311 0.76 -0.6
1,425,086 + PFR28_01311 0.76 +0.7
1,425,086 + PFR28_01311 0.76 -0.3
1,425,086 + PFR28_01311 0.76 +0.9
1,425,086 + PFR28_01311 0.76 -0.2
1,425,086 + PFR28_01311 0.76 +0.3
1,425,086 + PFR28_01311 0.76 +0.1
1,425,086 + PFR28_01311 0.76 -0.5
1,425,086 + PFR28_01311 0.76 -0.8
1,425,086 + PFR28_01311 0.76 -0.3
1,425,086 + PFR28_01311 0.76 +1.8
1,425,086 + PFR28_01311 0.76 -0.3
1,425,086 + PFR28_01311 0.76 +0.1
1,425,086 + PFR28_01311 0.76 +0.8
1,425,086 + PFR28_01311 0.76 +0.5
1,425,086 + PFR28_01311 0.76 -0.0
1,425,086 + PFR28_01311 0.76 -0.0
1,425,086 + PFR28_01311 0.76 -0.2
1,425,086 + PFR28_01311 0.76 +1.3
1,425,087 - PFR28_01311 0.76 +0.4
1,425,087 - PFR28_01311 0.76 +0.1
1,425,087 - PFR28_01311 0.76 -1.4
1,425,087 - PFR28_01311 0.76 -0.8
1,425,087 - PFR28_01311 0.76 -0.5
1,425,087 - PFR28_01311 0.76 -0.3
1,425,087 - PFR28_01311 0.76 +0.4
1,425,087 - PFR28_01311 0.76 +0.7
1,425,087 - PFR28_01311 0.76 -1.2
1,425,087 - PFR28_01311 0.76 -0.2
1,425,087 - PFR28_01311 0.76 -0.5
1,425,087 - PFR28_01311 0.76 +0.6
1,425,087 - PFR28_01311 0.76 -0.3
1,425,087 - PFR28_01311 0.76 -0.3
1,425,087 - PFR28_01311 0.76 +0.1
1,425,087 - PFR28_01311 0.76 +0.2
1,425,087 - PFR28_01311 0.76 +0.7
1,425,087 - PFR28_01311 0.76 -0.0
1,425,087 - PFR28_01311 0.76 -0.1
1,425,087 - PFR28_01311 0.76 +1.2
1,425,087 - PFR28_01311 0.76 +1.8
1,425,087 - PFR28_01311 0.76 -0.4
1,425,087 - PFR28_01311 0.76 +0.2
1,425,090 + PFR28_01311 0.76 -0.1
1,425,090 + PFR28_01311 0.76 +0.0
1,425,090 + PFR28_01311 0.76 -0.8
1,425,090 + PFR28_01311 0.76 +0.7
1,425,090 + PFR28_01311 0.76 -0.2
1,425,090 + PFR28_01311 0.76 -0.4
1,425,090 + PFR28_01311 0.76 +0.4
1,425,090 + PFR28_01311 0.76 -0.4
1,425,090 + PFR28_01311 0.76 +0.4
1,425,090 + PFR28_01311 0.76 +0.5
1,425,090 + PFR28_01311 0.76 +0.4
1,425,090 + PFR28_01311 0.76 -0.1
1,425,090 + PFR28_01311 0.76 +0.9
1,425,091 - PFR28_01311 0.76 +0.4
1,425,091 - PFR28_01311 0.76 +0.3
1,425,091 - PFR28_01311 0.76 -0.4
1,425,091 - PFR28_01311 0.76 -0.4
1,425,091 - PFR28_01311 0.76 -0.4
1,425,091 - PFR28_01311 0.76 -0.7
1,425,091 - PFR28_01311 0.76 +0.4
1,425,225 + +0.1
1,425,225 + -0.2
1,425,316 - +0.3
1,425,401 - +2.7
1,425,538 + PFR28_01312 0.15 +0.1
1,425,539 - PFR28_01312 0.15 +0.5
1,425,673 + PFR28_01312 0.24 +0.1
1,425,674 - PFR28_01312 0.24 -0.5
1,425,878 - PFR28_01312 0.39 -1.2
1,425,936 + PFR28_01312 0.43 -0.5
1,425,936 + PFR28_01312 0.43 +2.7
1,426,129 + PFR28_01312 0.57 +0.7
1,426,262 - PFR28_01312 0.66 +1.1
1,426,262 - PFR28_01312 0.66 -0.5
1,426,262 - PFR28_01312 0.66 -1.9
1,426,549 + PFR28_01312 0.86 +0.1
1,426,597 + PFR28_01312 0.90 +2.1
1,426,598 - PFR28_01312 0.90 -0.5
1,426,600 + +0.1
1,426,601 - -0.9
1,426,633 + +0.5
1,426,634 - -1.2
1,426,634 - -0.9
1,426,634 - +1.1
1,426,654 - -0.5
1,426,817 + +0.7
1,426,818 - -0.3
1,426,960 - -0.9
1,427,086 + PFR28_01313 0.19 +0.5
1,427,086 + PFR28_01313 0.19 +0.1
1,427,086 + PFR28_01313 0.19 +0.1
1,427,086 + PFR28_01313 0.19 -0.5
1,427,086 + PFR28_01313 0.19 +1.1
1,427,086 + PFR28_01313 0.19 +1.7
1,427,086 + PFR28_01313 0.19 -0.5
1,427,086 + PFR28_01313 0.19 +0.1
1,427,086 + PFR28_01313 0.19 -1.2
1,427,087 - PFR28_01313 0.19 -0.9
1,427,087 - PFR28_01313 0.19 +1.1
1,427,087 - PFR28_01313 0.19 +1.1
1,427,087 - PFR28_01313 0.19 -0.9
1,427,282 - PFR28_01313 0.32 -1.7
1,427,282 - PFR28_01313 0.32 -1.5
1,427,558 - PFR28_01313 0.52 +0.1
1,427,704 + PFR28_01313 0.62 +0.1

Or see this region's nucleotide sequence