Strain Fitness in Pseudomonas sp. RS175 around PFR28_01182

Experiment: D-Glucose (C) 10 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPFR28_01180 and PFR28_01181 overlap by 4 nucleotidesPFR28_01181 and PFR28_01182 are separated by 45 nucleotidesPFR28_01182 and PFR28_01183 overlap by 1 nucleotidesPFR28_01183 and PFR28_01184 are separated by 104 nucleotides PFR28_01180: PFR28_01180 - hypothetical protein, at 1,291,560 to 1,292,402 _01180 PFR28_01181: PFR28_01181 - hypothetical protein, at 1,292,399 to 1,292,722 _01181 PFR28_01182: PFR28_01182 - hypothetical protein, at 1,292,768 to 1,292,980 _01182 PFR28_01183: PFR28_01183 - hypothetical protein, at 1,292,980 to 1,293,441 _01183 PFR28_01184: PFR28_01184 - hypothetical protein, at 1,293,546 to 1,294,244 _01184 Position (kb) 1292 1293Strain fitness (log2 ratio) -2 -1 0 1at 1291.927 kb on + strand, within PFR28_01180at 1291.927 kb on + strand, within PFR28_01180at 1292.041 kb on + strand, within PFR28_01180at 1292.042 kb on - strand, within PFR28_01180at 1292.042 kb on - strand, within PFR28_01180at 1292.272 kb on + strand, within PFR28_01180at 1292.273 kb on - strand, within PFR28_01180at 1292.402 kb on + strandat 1292.402 kb on + strandat 1292.411 kb on + strandat 1292.411 kb on + strandat 1292.411 kb on + strandat 1292.411 kb on + strandat 1292.412 kb on - strandat 1292.412 kb on - strandat 1292.412 kb on - strandat 1292.462 kb on + strand, within PFR28_01181at 1292.463 kb on - strand, within PFR28_01181at 1292.475 kb on - strand, within PFR28_01181at 1292.602 kb on - strand, within PFR28_01181at 1292.602 kb on - strand, within PFR28_01181at 1292.646 kb on + strand, within PFR28_01181at 1292.646 kb on + strand, within PFR28_01181at 1292.646 kb on + strand, within PFR28_01181at 1292.646 kb on + strand, within PFR28_01181at 1292.647 kb on - strand, within PFR28_01181at 1292.648 kb on + strand, within PFR28_01181at 1292.741 kb on + strandat 1292.742 kb on - strandat 1292.778 kb on - strandat 1292.778 kb on - strandat 1292.919 kb on + strand, within PFR28_01182at 1292.920 kb on - strand, within PFR28_01182at 1292.986 kb on + strandat 1292.987 kb on - strandat 1292.987 kb on - strandat 1293.051 kb on - strand, within PFR28_01183at 1293.399 kb on + strandat 1293.400 kb on - strandat 1293.400 kb on - strandat 1293.459 kb on + strandat 1293.460 kb on - strandat 1293.922 kb on + strand, within PFR28_01184at 1293.922 kb on + strand, within PFR28_01184at 1293.922 kb on + strand, within PFR28_01184at 1293.923 kb on - strand, within PFR28_01184at 1293.923 kb on - strand, within PFR28_01184at 1293.923 kb on - strand, within PFR28_01184at 1293.923 kb on - strand, within PFR28_01184

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C) 10 mM
remove
1,291,927 + PFR28_01180 0.44 +0.2
1,291,927 + PFR28_01180 0.44 -0.7
1,292,041 + PFR28_01180 0.57 -0.3
1,292,042 - PFR28_01180 0.57 +1.4
1,292,042 - PFR28_01180 0.57 +0.3
1,292,272 + PFR28_01180 0.84 +0.6
1,292,273 - PFR28_01180 0.85 -0.8
1,292,402 + +0.2
1,292,402 + -1.6
1,292,411 + -0.2
1,292,411 + +0.0
1,292,411 + +0.1
1,292,411 + +0.7
1,292,412 - -0.6
1,292,412 - -1.0
1,292,412 - +0.4
1,292,462 + PFR28_01181 0.19 -0.4
1,292,463 - PFR28_01181 0.20 -1.7
1,292,475 - PFR28_01181 0.23 -0.8
1,292,602 - PFR28_01181 0.63 -0.5
1,292,602 - PFR28_01181 0.63 -0.9
1,292,646 + PFR28_01181 0.76 -1.1
1,292,646 + PFR28_01181 0.76 -0.1
1,292,646 + PFR28_01181 0.76 +0.3
1,292,646 + PFR28_01181 0.76 +0.1
1,292,647 - PFR28_01181 0.77 -1.7
1,292,648 + PFR28_01181 0.77 -1.3
1,292,741 + +0.2
1,292,742 - -0.5
1,292,778 - -2.3
1,292,778 - -0.9
1,292,919 + PFR28_01182 0.71 -0.7
1,292,920 - PFR28_01182 0.71 -2.1
1,292,986 + -1.8
1,292,987 - +0.2
1,292,987 - +0.4
1,293,051 - PFR28_01183 0.15 -1.3
1,293,399 + +0.5
1,293,400 - +0.1
1,293,400 - -1.2
1,293,459 + -0.8
1,293,460 - +0.0
1,293,922 + PFR28_01184 0.54 -0.7
1,293,922 + PFR28_01184 0.54 -0.1
1,293,922 + PFR28_01184 0.54 -0.1
1,293,923 - PFR28_01184 0.54 +0.4
1,293,923 - PFR28_01184 0.54 -1.2
1,293,923 - PFR28_01184 0.54 -2.3
1,293,923 - PFR28_01184 0.54 -0.5

Or see this region's nucleotide sequence