Experiment: D-Glucose (C) 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFR28_01180 and PFR28_01181 overlap by 4 nucleotides PFR28_01181 and PFR28_01182 are separated by 45 nucleotides PFR28_01182 and PFR28_01183 overlap by 1 nucleotides PFR28_01183 and PFR28_01184 are separated by 104 nucleotides
PFR28_01180: PFR28_01180 - hypothetical protein, at 1,291,560 to 1,292,402
_01180
PFR28_01181: PFR28_01181 - hypothetical protein, at 1,292,399 to 1,292,722
_01181
PFR28_01182: PFR28_01182 - hypothetical protein, at 1,292,768 to 1,292,980
_01182
PFR28_01183: PFR28_01183 - hypothetical protein, at 1,292,980 to 1,293,441
_01183
PFR28_01184: PFR28_01184 - hypothetical protein, at 1,293,546 to 1,294,244
_01184
Position (kb)
1292
1293 Strain fitness (log2 ratio)
-2
-1
0
1 at 1291.927 kb on + strand, within PFR28_01180 at 1291.927 kb on + strand, within PFR28_01180 at 1292.041 kb on + strand, within PFR28_01180 at 1292.042 kb on - strand, within PFR28_01180 at 1292.042 kb on - strand, within PFR28_01180 at 1292.272 kb on + strand, within PFR28_01180 at 1292.273 kb on - strand, within PFR28_01180 at 1292.402 kb on + strand at 1292.402 kb on + strand at 1292.411 kb on + strand at 1292.411 kb on + strand at 1292.411 kb on + strand at 1292.411 kb on + strand at 1292.412 kb on - strand at 1292.412 kb on - strand at 1292.412 kb on - strand at 1292.462 kb on + strand, within PFR28_01181 at 1292.463 kb on - strand, within PFR28_01181 at 1292.475 kb on - strand, within PFR28_01181 at 1292.602 kb on - strand, within PFR28_01181 at 1292.602 kb on - strand, within PFR28_01181 at 1292.646 kb on + strand, within PFR28_01181 at 1292.646 kb on + strand, within PFR28_01181 at 1292.646 kb on + strand, within PFR28_01181 at 1292.646 kb on + strand, within PFR28_01181 at 1292.647 kb on - strand, within PFR28_01181 at 1292.648 kb on + strand, within PFR28_01181 at 1292.741 kb on + strand at 1292.742 kb on - strand at 1292.778 kb on - strand at 1292.778 kb on - strand at 1292.919 kb on + strand, within PFR28_01182 at 1292.920 kb on - strand, within PFR28_01182 at 1292.986 kb on + strand at 1292.987 kb on - strand at 1292.987 kb on - strand at 1293.051 kb on - strand, within PFR28_01183 at 1293.399 kb on + strand at 1293.400 kb on - strand at 1293.400 kb on - strand at 1293.459 kb on + strand at 1293.460 kb on - strand at 1293.922 kb on + strand, within PFR28_01184 at 1293.922 kb on + strand, within PFR28_01184 at 1293.922 kb on + strand, within PFR28_01184 at 1293.923 kb on - strand, within PFR28_01184 at 1293.923 kb on - strand, within PFR28_01184 at 1293.923 kb on - strand, within PFR28_01184 at 1293.923 kb on - strand, within PFR28_01184
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C) 10 mM remove 1,291,927 + PFR28_01180 0.44 +0.2 1,291,927 + PFR28_01180 0.44 -0.7 1,292,041 + PFR28_01180 0.57 -0.3 1,292,042 - PFR28_01180 0.57 +1.4 1,292,042 - PFR28_01180 0.57 +0.3 1,292,272 + PFR28_01180 0.84 +0.6 1,292,273 - PFR28_01180 0.85 -0.8 1,292,402 + +0.2 1,292,402 + -1.6 1,292,411 + -0.2 1,292,411 + +0.0 1,292,411 + +0.1 1,292,411 + +0.7 1,292,412 - -0.6 1,292,412 - -1.0 1,292,412 - +0.4 1,292,462 + PFR28_01181 0.19 -0.4 1,292,463 - PFR28_01181 0.20 -1.7 1,292,475 - PFR28_01181 0.23 -0.8 1,292,602 - PFR28_01181 0.63 -0.5 1,292,602 - PFR28_01181 0.63 -0.9 1,292,646 + PFR28_01181 0.76 -1.1 1,292,646 + PFR28_01181 0.76 -0.1 1,292,646 + PFR28_01181 0.76 +0.3 1,292,646 + PFR28_01181 0.76 +0.1 1,292,647 - PFR28_01181 0.77 -1.7 1,292,648 + PFR28_01181 0.77 -1.3 1,292,741 + +0.2 1,292,742 - -0.5 1,292,778 - -2.3 1,292,778 - -0.9 1,292,919 + PFR28_01182 0.71 -0.7 1,292,920 - PFR28_01182 0.71 -2.1 1,292,986 + -1.8 1,292,987 - +0.2 1,292,987 - +0.4 1,293,051 - PFR28_01183 0.15 -1.3 1,293,399 + +0.5 1,293,400 - +0.1 1,293,400 - -1.2 1,293,459 + -0.8 1,293,460 - +0.0 1,293,922 + PFR28_01184 0.54 -0.7 1,293,922 + PFR28_01184 0.54 -0.1 1,293,922 + PFR28_01184 0.54 -0.1 1,293,923 - PFR28_01184 0.54 +0.4 1,293,923 - PFR28_01184 0.54 -1.2 1,293,923 - PFR28_01184 0.54 -2.3 1,293,923 - PFR28_01184 0.54 -0.5
Or see this region's nucleotide sequence