Strain Fitness in Pseudomonas sp. RS175 around PFR28_01156

Experiment: D-Glucose (C) 10 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPFR28_01152 and PFR28_01153 are separated by 6 nucleotidesPFR28_01153 and PFR28_01154 are separated by 75 nucleotidesPFR28_01154 and PFR28_01155 overlap by 4 nucleotidesPFR28_01155 and PFR28_01156 overlap by 4 nucleotidesPFR28_01156 and PFR28_01157 are separated by 40 nucleotidesPFR28_01157 and PFR28_01158 are separated by 101 nucleotides PFR28_01152: PFR28_01152 - hypothetical protein, at 1,269,789 to 1,272,518 _01152 PFR28_01153: PFR28_01153 - hypothetical protein, at 1,272,525 to 1,272,758 _01153 PFR28_01154: PFR28_01154 - hypothetical protein, at 1,272,834 to 1,273,205 _01154 PFR28_01155: PFR28_01155 - hypothetical protein, at 1,273,202 to 1,273,492 _01155 PFR28_01156: PFR28_01156 - hypothetical protein, at 1,273,489 to 1,273,962 _01156 PFR28_01157: PFR28_01157 - hypothetical protein, at 1,274,003 to 1,274,251 _01157 PFR28_01158: PFR28_01158 - hypothetical protein, at 1,274,353 to 1,274,760 _01158 Position (kb) 1273 1274Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 1272.526 kb on + strandat 1272.526 kb on + strandat 1272.526 kb on + strandat 1272.526 kb on + strandat 1272.527 kb on - strandat 1272.618 kb on + strand, within PFR28_01153at 1272.679 kb on + strand, within PFR28_01153at 1272.824 kb on + strandat 1272.888 kb on + strand, within PFR28_01154at 1273.056 kb on + strand, within PFR28_01154at 1273.057 kb on - strand, within PFR28_01154at 1273.076 kb on + strand, within PFR28_01154at 1273.076 kb on + strand, within PFR28_01154at 1273.076 kb on + strand, within PFR28_01154at 1273.076 kb on + strand, within PFR28_01154at 1273.076 kb on + strand, within PFR28_01154at 1273.077 kb on - strand, within PFR28_01154at 1273.096 kb on + strand, within PFR28_01154at 1273.096 kb on + strand, within PFR28_01154at 1273.096 kb on + strand, within PFR28_01154at 1273.097 kb on - strand, within PFR28_01154at 1273.097 kb on - strand, within PFR28_01154at 1273.097 kb on - strand, within PFR28_01154at 1273.097 kb on - strand, within PFR28_01154at 1273.298 kb on + strand, within PFR28_01155at 1273.401 kb on + strand, within PFR28_01155at 1273.401 kb on + strand, within PFR28_01155at 1273.482 kb on + strandat 1273.482 kb on + strandat 1273.482 kb on + strandat 1273.482 kb on + strandat 1273.482 kb on + strandat 1273.482 kb on + strandat 1273.482 kb on + strandat 1273.483 kb on - strandat 1273.483 kb on - strandat 1273.483 kb on - strandat 1273.483 kb on - strandat 1273.483 kb on - strandat 1273.483 kb on - strandat 1273.483 kb on - strandat 1273.483 kb on - strandat 1273.556 kb on + strand, within PFR28_01156at 1273.557 kb on - strand, within PFR28_01156at 1273.604 kb on - strand, within PFR28_01156at 1273.604 kb on - strand, within PFR28_01156at 1273.604 kb on - strand, within PFR28_01156at 1273.644 kb on - strand, within PFR28_01156at 1273.644 kb on - strand, within PFR28_01156at 1273.644 kb on - strand, within PFR28_01156at 1273.644 kb on - strand, within PFR28_01156at 1273.666 kb on + strand, within PFR28_01156at 1273.666 kb on + strand, within PFR28_01156at 1273.666 kb on + strand, within PFR28_01156at 1273.666 kb on + strand, within PFR28_01156at 1273.666 kb on + strand, within PFR28_01156at 1273.666 kb on + strand, within PFR28_01156at 1273.667 kb on - strand, within PFR28_01156at 1273.667 kb on - strand, within PFR28_01156at 1273.667 kb on - strand, within PFR28_01156at 1273.679 kb on + strand, within PFR28_01156at 1273.680 kb on - strand, within PFR28_01156at 1273.680 kb on - strand, within PFR28_01156at 1273.680 kb on - strand, within PFR28_01156at 1273.680 kb on - strand, within PFR28_01156at 1273.736 kb on + strand, within PFR28_01156at 1273.736 kb on + strand, within PFR28_01156at 1273.736 kb on + strand, within PFR28_01156at 1273.736 kb on + strand, within PFR28_01156at 1273.736 kb on + strand, within PFR28_01156at 1273.736 kb on + strand, within PFR28_01156at 1273.736 kb on + strand, within PFR28_01156at 1273.736 kb on + strand, within PFR28_01156at 1273.736 kb on + strand, within PFR28_01156at 1273.737 kb on - strand, within PFR28_01156at 1273.737 kb on - strand, within PFR28_01156at 1273.737 kb on - strand, within PFR28_01156at 1273.737 kb on - strand, within PFR28_01156at 1273.737 kb on - strand, within PFR28_01156at 1273.737 kb on - strand, within PFR28_01156at 1273.737 kb on - strand, within PFR28_01156at 1273.737 kb on - strand, within PFR28_01156at 1273.737 kb on - strand, within PFR28_01156at 1273.737 kb on - strand, within PFR28_01156at 1273.737 kb on - strand, within PFR28_01156at 1273.737 kb on - strand, within PFR28_01156at 1273.751 kb on + strand, within PFR28_01156at 1273.752 kb on - strand, within PFR28_01156at 1273.752 kb on - strand, within PFR28_01156at 1273.752 kb on - strand, within PFR28_01156at 1273.752 kb on - strand, within PFR28_01156at 1273.835 kb on + strand, within PFR28_01156at 1273.945 kb on + strandat 1273.946 kb on - strandat 1273.946 kb on - strandat 1273.946 kb on - strandat 1273.948 kb on + strandat 1273.949 kb on - strandat 1273.949 kb on - strandat 1273.993 kb on + strandat 1274.069 kb on + strand, within PFR28_01157at 1274.150 kb on + strand, within PFR28_01157at 1274.150 kb on + strand, within PFR28_01157at 1274.278 kb on + strandat 1274.278 kb on + strandat 1274.278 kb on + strandat 1274.278 kb on + strandat 1274.278 kb on + strandat 1274.278 kb on + strandat 1274.293 kb on + strandat 1274.293 kb on + strandat 1274.758 kb on + strandat 1274.759 kb on - strandat 1274.759 kb on - strandat 1274.766 kb on - strandat 1274.772 kb on + strandat 1274.773 kb on - strandat 1274.773 kb on - strandat 1274.828 kb on - strandat 1274.828 kb on - strandat 1274.873 kb on + strandat 1274.921 kb on + strandat 1274.936 kb on - strandat 1274.940 kb on - strandat 1274.940 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C) 10 mM
remove
1,272,526 + -1.5
1,272,526 + +0.5
1,272,526 + +0.4
1,272,526 + -0.0
1,272,527 - -0.1
1,272,618 + PFR28_01153 0.40 -2.3
1,272,679 + PFR28_01153 0.66 +0.1
1,272,824 + +0.4
1,272,888 + PFR28_01154 0.15 -0.1
1,273,056 + PFR28_01154 0.60 -0.8
1,273,057 - PFR28_01154 0.60 -5.3
1,273,076 + PFR28_01154 0.65 +0.4
1,273,076 + PFR28_01154 0.65 +0.1
1,273,076 + PFR28_01154 0.65 -1.4
1,273,076 + PFR28_01154 0.65 +0.7
1,273,076 + PFR28_01154 0.65 -0.8
1,273,077 - PFR28_01154 0.65 -3.2
1,273,096 + PFR28_01154 0.70 +0.1
1,273,096 + PFR28_01154 0.70 +1.3
1,273,096 + PFR28_01154 0.70 -0.1
1,273,097 - PFR28_01154 0.71 -5.6
1,273,097 - PFR28_01154 0.71 -4.8
1,273,097 - PFR28_01154 0.71 -0.5
1,273,097 - PFR28_01154 0.71 -0.9
1,273,298 + PFR28_01155 0.33 +0.2
1,273,401 + PFR28_01155 0.68 +0.1
1,273,401 + PFR28_01155 0.68 +0.5
1,273,482 + +1.2
1,273,482 + -0.7
1,273,482 + +0.0
1,273,482 + -0.3
1,273,482 + -0.6
1,273,482 + -0.4
1,273,482 + +0.5
1,273,483 - -5.1
1,273,483 - -5.8
1,273,483 - -4.6
1,273,483 - +1.1
1,273,483 - +1.1
1,273,483 - -5.7
1,273,483 - -5.3
1,273,483 - -1.9
1,273,556 + PFR28_01156 0.14 +0.7
1,273,557 - PFR28_01156 0.14 +1.7
1,273,604 - PFR28_01156 0.24 -4.5
1,273,604 - PFR28_01156 0.24 +1.1
1,273,604 - PFR28_01156 0.24 -3.0
1,273,644 - PFR28_01156 0.33 -0.5
1,273,644 - PFR28_01156 0.33 -1.7
1,273,644 - PFR28_01156 0.33 +1.1
1,273,644 - PFR28_01156 0.33 +1.1
1,273,666 + PFR28_01156 0.37 +0.4
1,273,666 + PFR28_01156 0.37 +0.0
1,273,666 + PFR28_01156 0.37 -0.6
1,273,666 + PFR28_01156 0.37 -0.2
1,273,666 + PFR28_01156 0.37 +0.2
1,273,666 + PFR28_01156 0.37 -0.6
1,273,667 - PFR28_01156 0.38 -4.1
1,273,667 - PFR28_01156 0.38 -2.3
1,273,667 - PFR28_01156 0.38 -3.7
1,273,679 + PFR28_01156 0.40 -0.2
1,273,680 - PFR28_01156 0.40 +1.1
1,273,680 - PFR28_01156 0.40 -1.7
1,273,680 - PFR28_01156 0.40 -5.9
1,273,680 - PFR28_01156 0.40 -0.9
1,273,736 + PFR28_01156 0.52 -1.0
1,273,736 + PFR28_01156 0.52 +0.9
1,273,736 + PFR28_01156 0.52 -0.9
1,273,736 + PFR28_01156 0.52 +0.2
1,273,736 + PFR28_01156 0.52 -0.6
1,273,736 + PFR28_01156 0.52 +0.3
1,273,736 + PFR28_01156 0.52 -0.6
1,273,736 + PFR28_01156 0.52 -0.3
1,273,736 + PFR28_01156 0.52 -0.1
1,273,737 - PFR28_01156 0.52 -3.7
1,273,737 - PFR28_01156 0.52 -3.6
1,273,737 - PFR28_01156 0.52 -4.8
1,273,737 - PFR28_01156 0.52 -2.4
1,273,737 - PFR28_01156 0.52 -2.7
1,273,737 - PFR28_01156 0.52 -3.2
1,273,737 - PFR28_01156 0.52 -4.1
1,273,737 - PFR28_01156 0.52 -3.0
1,273,737 - PFR28_01156 0.52 -2.4
1,273,737 - PFR28_01156 0.52 -3.6
1,273,737 - PFR28_01156 0.52 -3.7
1,273,737 - PFR28_01156 0.52 -1.5
1,273,751 + PFR28_01156 0.55 +1.1
1,273,752 - PFR28_01156 0.55 -3.1
1,273,752 - PFR28_01156 0.55 -2.6
1,273,752 - PFR28_01156 0.55 -5.0
1,273,752 - PFR28_01156 0.55 -3.0
1,273,835 + PFR28_01156 0.73 +0.2
1,273,945 + +0.7
1,273,946 - -2.5
1,273,946 - +0.2
1,273,946 - -1.2
1,273,948 + +0.3
1,273,949 - -0.3
1,273,949 - -1.1
1,273,993 + -1.7
1,274,069 + PFR28_01157 0.27 +0.3
1,274,150 + PFR28_01157 0.59 -0.3
1,274,150 + PFR28_01157 0.59 +1.1
1,274,278 + -0.3
1,274,278 + +0.1
1,274,278 + -0.3
1,274,278 + +0.1
1,274,278 + +0.3
1,274,278 + +0.7
1,274,293 + +0.4
1,274,293 + +0.9
1,274,758 + +0.4
1,274,759 - -0.7
1,274,759 - -0.3
1,274,766 - +0.1
1,274,772 + -0.9
1,274,773 - -1.2
1,274,773 - +0.1
1,274,828 - +0.0
1,274,828 - +0.5
1,274,873 + +0.1
1,274,921 + -0.1
1,274,936 - +1.6
1,274,940 - +0.3
1,274,940 - +0.5

Or see this region's nucleotide sequence