Strain Fitness in Pseudomonas sp. RS175 around PFR28_01042

Experiment: D-Glucose (C) 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_01041 and PFR28_01042 are separated by 62 nucleotidesPFR28_01042 and PFR28_01043 are separated by 2 nucleotides PFR28_01041: PFR28_01041 - Zinc transport protein ZntB, at 1,139,271 to 1,140,266 _01041 PFR28_01042: PFR28_01042 - hypothetical protein, at 1,140,329 to 1,140,574 _01042 PFR28_01043: PFR28_01043 - hypothetical protein, at 1,140,577 to 1,141,401 _01043 Position (kb) 1140 1141Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1139.721 kb on + strand, within PFR28_01041at 1139.721 kb on + strand, within PFR28_01041at 1139.721 kb on + strand, within PFR28_01041at 1139.721 kb on + strand, within PFR28_01041at 1139.721 kb on + strand, within PFR28_01041at 1139.721 kb on + strand, within PFR28_01041at 1139.721 kb on + strand, within PFR28_01041at 1139.721 kb on + strand, within PFR28_01041at 1139.721 kb on + strand, within PFR28_01041at 1139.721 kb on + strand, within PFR28_01041at 1139.721 kb on + strand, within PFR28_01041at 1139.721 kb on + strand, within PFR28_01041at 1139.721 kb on + strand, within PFR28_01041at 1139.721 kb on + strand, within PFR28_01041at 1139.721 kb on + strand, within PFR28_01041at 1139.721 kb on + strand, within PFR28_01041at 1139.722 kb on - strand, within PFR28_01041at 1139.722 kb on - strand, within PFR28_01041at 1139.722 kb on - strand, within PFR28_01041at 1139.722 kb on - strand, within PFR28_01041at 1139.722 kb on - strand, within PFR28_01041at 1139.722 kb on - strand, within PFR28_01041at 1139.722 kb on - strand, within PFR28_01041at 1139.722 kb on - strand, within PFR28_01041at 1139.722 kb on - strand, within PFR28_01041at 1139.722 kb on - strand, within PFR28_01041at 1139.722 kb on - strand, within PFR28_01041at 1139.722 kb on - strand, within PFR28_01041at 1139.722 kb on - strand, within PFR28_01041at 1139.722 kb on - strand, within PFR28_01041at 1139.722 kb on - strand, within PFR28_01041at 1139.723 kb on + strand, within PFR28_01041at 1139.723 kb on + strand, within PFR28_01041at 1139.724 kb on - strand, within PFR28_01041at 1139.724 kb on - strand, within PFR28_01041at 1139.724 kb on - strand, within PFR28_01041at 1139.733 kb on + strand, within PFR28_01041at 1139.821 kb on - strand, within PFR28_01041at 1139.958 kb on + strand, within PFR28_01041at 1139.958 kb on + strand, within PFR28_01041at 1139.959 kb on - strand, within PFR28_01041at 1139.959 kb on - strand, within PFR28_01041at 1139.959 kb on - strand, within PFR28_01041at 1139.959 kb on - strand, within PFR28_01041at 1139.991 kb on + strand, within PFR28_01041at 1140.084 kb on + strand, within PFR28_01041at 1140.084 kb on + strand, within PFR28_01041at 1140.084 kb on + strand, within PFR28_01041at 1140.085 kb on - strand, within PFR28_01041at 1140.085 kb on - strand, within PFR28_01041at 1140.328 kb on + strandat 1140.328 kb on + strandat 1140.328 kb on + strandat 1140.328 kb on + strandat 1140.328 kb on + strandat 1140.329 kb on - strandat 1140.538 kb on + strand, within PFR28_01042at 1140.562 kb on + strandat 1140.576 kb on + strandat 1140.577 kb on - strandat 1140.642 kb on + strandat 1140.841 kb on + strand, within PFR28_01043at 1140.851 kb on + strand, within PFR28_01043at 1140.858 kb on + strand, within PFR28_01043at 1140.858 kb on + strand, within PFR28_01043at 1140.858 kb on + strand, within PFR28_01043at 1140.909 kb on + strand, within PFR28_01043at 1140.931 kb on + strand, within PFR28_01043at 1140.931 kb on + strand, within PFR28_01043at 1141.039 kb on + strand, within PFR28_01043at 1141.059 kb on + strand, within PFR28_01043at 1141.154 kb on + strand, within PFR28_01043at 1141.237 kb on + strand, within PFR28_01043at 1141.237 kb on + strand, within PFR28_01043at 1141.237 kb on + strand, within PFR28_01043at 1141.238 kb on - strand, within PFR28_01043at 1141.238 kb on - strand, within PFR28_01043at 1141.238 kb on - strand, within PFR28_01043at 1141.238 kb on - strand, within PFR28_01043at 1141.238 kb on - strand, within PFR28_01043at 1141.238 kb on - strand, within PFR28_01043at 1141.252 kb on + strand, within PFR28_01043at 1141.252 kb on + strand, within PFR28_01043at 1141.253 kb on - strand, within PFR28_01043at 1141.417 kb on + strandat 1141.422 kb on + strandat 1141.422 kb on + strandat 1141.422 kb on + strandat 1141.422 kb on + strandat 1141.422 kb on + strandat 1141.422 kb on + strandat 1141.422 kb on + strandat 1141.422 kb on + strandat 1141.422 kb on + strandat 1141.422 kb on + strandat 1141.471 kb on + strandat 1141.471 kb on + strandat 1141.471 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C) 10 mM
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1,139,721 + PFR28_01041 0.45 +1.1
1,139,721 + PFR28_01041 0.45 +0.4
1,139,721 + PFR28_01041 0.45 -0.5
1,139,721 + PFR28_01041 0.45 -0.3
1,139,721 + PFR28_01041 0.45 +0.9
1,139,721 + PFR28_01041 0.45 +0.3
1,139,721 + PFR28_01041 0.45 -0.2
1,139,721 + PFR28_01041 0.45 -0.9
1,139,721 + PFR28_01041 0.45 -1.2
1,139,721 + PFR28_01041 0.45 +0.1
1,139,721 + PFR28_01041 0.45 -0.1
1,139,721 + PFR28_01041 0.45 -0.0
1,139,721 + PFR28_01041 0.45 -0.2
1,139,721 + PFR28_01041 0.45 +0.7
1,139,721 + PFR28_01041 0.45 -0.3
1,139,721 + PFR28_01041 0.45 +0.1
1,139,722 - PFR28_01041 0.45 +1.5
1,139,722 - PFR28_01041 0.45 -0.2
1,139,722 - PFR28_01041 0.45 +0.1
1,139,722 - PFR28_01041 0.45 -1.6
1,139,722 - PFR28_01041 0.45 -0.1
1,139,722 - PFR28_01041 0.45 +1.1
1,139,722 - PFR28_01041 0.45 -1.4
1,139,722 - PFR28_01041 0.45 +0.1
1,139,722 - PFR28_01041 0.45 -0.0
1,139,722 - PFR28_01041 0.45 -0.7
1,139,722 - PFR28_01041 0.45 -0.8
1,139,722 - PFR28_01041 0.45 -0.0
1,139,722 - PFR28_01041 0.45 -0.1
1,139,722 - PFR28_01041 0.45 -0.0
1,139,722 - PFR28_01041 0.45 -0.4
1,139,723 + PFR28_01041 0.45 +0.5
1,139,723 + PFR28_01041 0.45 +0.4
1,139,724 - PFR28_01041 0.45 -0.4
1,139,724 - PFR28_01041 0.45 -0.9
1,139,724 - PFR28_01041 0.45 -0.4
1,139,733 + PFR28_01041 0.46 -0.1
1,139,821 - PFR28_01041 0.55 +0.7
1,139,958 + PFR28_01041 0.69 +0.5
1,139,958 + PFR28_01041 0.69 +0.4
1,139,959 - PFR28_01041 0.69 +0.7
1,139,959 - PFR28_01041 0.69 +0.3
1,139,959 - PFR28_01041 0.69 +1.1
1,139,959 - PFR28_01041 0.69 +1.1
1,139,991 + PFR28_01041 0.72 +1.1
1,140,084 + PFR28_01041 0.82 -0.6
1,140,084 + PFR28_01041 0.82 -0.9
1,140,084 + PFR28_01041 0.82 +0.1
1,140,085 - PFR28_01041 0.82 -1.1
1,140,085 - PFR28_01041 0.82 -1.2
1,140,328 + -0.7
1,140,328 + -1.0
1,140,328 + +0.0
1,140,328 + +0.7
1,140,328 + -0.1
1,140,329 - +1.1
1,140,538 + PFR28_01042 0.85 -0.9
1,140,562 + -2.6
1,140,576 + -0.0
1,140,577 - -0.4
1,140,642 + +1.7
1,140,841 + PFR28_01043 0.32 -2.2
1,140,851 + PFR28_01043 0.33 +0.4
1,140,858 + PFR28_01043 0.34 +1.1
1,140,858 + PFR28_01043 0.34 -0.6
1,140,858 + PFR28_01043 0.34 +1.1
1,140,909 + PFR28_01043 0.40 +2.7
1,140,931 + PFR28_01043 0.43 +0.3
1,140,931 + PFR28_01043 0.43 +0.1
1,141,039 + PFR28_01043 0.56 +1.1
1,141,059 + PFR28_01043 0.58 +0.1
1,141,154 + PFR28_01043 0.70 +0.8
1,141,237 + PFR28_01043 0.80 +1.1
1,141,237 + PFR28_01043 0.80 -1.9
1,141,237 + PFR28_01043 0.80 -0.4
1,141,238 - PFR28_01043 0.80 +0.1
1,141,238 - PFR28_01043 0.80 +0.6
1,141,238 - PFR28_01043 0.80 -1.4
1,141,238 - PFR28_01043 0.80 +1.1
1,141,238 - PFR28_01043 0.80 -0.4
1,141,238 - PFR28_01043 0.80 +0.6
1,141,252 + PFR28_01043 0.82 +1.1
1,141,252 + PFR28_01043 0.82 -0.4
1,141,253 - PFR28_01043 0.82 +3.1
1,141,417 + +0.3
1,141,422 + +1.3
1,141,422 + +1.4
1,141,422 + -1.4
1,141,422 + +0.1
1,141,422 + -0.2
1,141,422 + -0.4
1,141,422 + -0.7
1,141,422 + -1.0
1,141,422 + -0.9
1,141,422 + -0.3
1,141,471 + -0.1
1,141,471 + -0.1
1,141,471 + +0.3

Or see this region's nucleotide sequence