Experiment: D-Glucose (C) 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFR28_00860 and PFR28_00861 are separated by 70 nucleotides PFR28_00861 and PFR28_00862 are separated by 1 nucleotides PFR28_00862 and PFR28_00863 are separated by 280 nucleotides
PFR28_00860: PFR28_00860 - hypothetical protein, at 933,374 to 934,261
_00860
PFR28_00861: PFR28_00861 - Chemotaxis protein CheW, at 934,332 to 934,817
_00861
PFR28_00862: PFR28_00862 - hypothetical protein, at 934,819 to 935,214
_00862
PFR28_00863: PFR28_00863 - hypothetical protein, at 935,495 to 935,824
_00863
Position (kb) 934
935 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 933.426 kb on - strand at 933.519 kb on + strand, within PFR28_00860 at 933.519 kb on + strand, within PFR28_00860 at 933.519 kb on + strand, within PFR28_00860 at 933.519 kb on + strand, within PFR28_00860 at 933.519 kb on + strand, within PFR28_00860 at 933.520 kb on - strand, within PFR28_00860 at 933.624 kb on + strand, within PFR28_00860 at 933.652 kb on - strand, within PFR28_00860 at 933.866 kb on + strand, within PFR28_00860 at 933.867 kb on - strand, within PFR28_00860 at 933.867 kb on - strand, within PFR28_00860 at 933.867 kb on - strand, within PFR28_00860 at 934.022 kb on + strand, within PFR28_00860 at 934.022 kb on + strand, within PFR28_00860 at 934.022 kb on + strand, within PFR28_00860 at 934.022 kb on + strand, within PFR28_00860 at 934.023 kb on - strand, within PFR28_00860 at 934.023 kb on - strand, within PFR28_00860 at 934.023 kb on - strand, within PFR28_00860 at 934.023 kb on - strand, within PFR28_00860 at 934.023 kb on - strand, within PFR28_00860 at 934.023 kb on - strand, within PFR28_00860 at 934.044 kb on - strand, within PFR28_00860 at 934.259 kb on + strand at 934.259 kb on + strand at 934.260 kb on - strand at 934.260 kb on - strand at 934.260 kb on - strand at 934.260 kb on - strand at 934.340 kb on + strand at 934.340 kb on + strand at 934.341 kb on - strand at 934.413 kb on + strand, within PFR28_00861 at 934.414 kb on - strand, within PFR28_00861 at 934.414 kb on - strand, within PFR28_00861 at 934.414 kb on - strand, within PFR28_00861 at 934.414 kb on - strand, within PFR28_00861 at 934.452 kb on + strand, within PFR28_00861 at 934.452 kb on + strand, within PFR28_00861 at 934.452 kb on + strand, within PFR28_00861 at 934.453 kb on - strand, within PFR28_00861 at 934.453 kb on - strand, within PFR28_00861 at 934.454 kb on + strand, within PFR28_00861 at 934.488 kb on + strand, within PFR28_00861 at 934.488 kb on + strand, within PFR28_00861 at 934.488 kb on + strand, within PFR28_00861 at 934.488 kb on + strand, within PFR28_00861 at 934.488 kb on + strand, within PFR28_00861 at 934.488 kb on + strand, within PFR28_00861 at 934.488 kb on + strand, within PFR28_00861 at 934.488 kb on + strand, within PFR28_00861 at 934.488 kb on + strand, within PFR28_00861 at 934.488 kb on + strand, within PFR28_00861 at 934.488 kb on + strand, within PFR28_00861 at 934.488 kb on + strand, within PFR28_00861 at 934.488 kb on + strand, within PFR28_00861 at 934.488 kb on + strand, within PFR28_00861 at 934.489 kb on - strand, within PFR28_00861 at 934.489 kb on - strand, within PFR28_00861 at 934.489 kb on - strand, within PFR28_00861 at 934.489 kb on - strand, within PFR28_00861 at 934.489 kb on - strand, within PFR28_00861 at 934.489 kb on - strand, within PFR28_00861 at 934.499 kb on + strand, within PFR28_00861 at 934.522 kb on + strand, within PFR28_00861 at 934.522 kb on + strand, within PFR28_00861 at 934.522 kb on + strand, within PFR28_00861 at 934.522 kb on + strand, within PFR28_00861 at 934.522 kb on + strand, within PFR28_00861 at 934.522 kb on + strand, within PFR28_00861 at 934.523 kb on - strand, within PFR28_00861 at 934.523 kb on - strand, within PFR28_00861 at 934.523 kb on - strand, within PFR28_00861 at 934.523 kb on - strand, within PFR28_00861 at 934.523 kb on - strand, within PFR28_00861 at 934.523 kb on - strand, within PFR28_00861 at 934.523 kb on - strand, within PFR28_00861 at 934.523 kb on - strand, within PFR28_00861 at 934.523 kb on - strand, within PFR28_00861 at 934.523 kb on - strand, within PFR28_00861 at 934.523 kb on - strand, within PFR28_00861 at 934.523 kb on - strand, within PFR28_00861 at 934.657 kb on - strand, within PFR28_00861 at 934.657 kb on - strand, within PFR28_00861 at 934.811 kb on + strand at 934.811 kb on + strand at 934.811 kb on + strand at 934.812 kb on - strand at 934.812 kb on - strand at 934.832 kb on + strand at 934.832 kb on + strand at 934.832 kb on + strand at 934.832 kb on + strand at 934.832 kb on + strand at 934.833 kb on - strand at 934.888 kb on + strand, within PFR28_00862 at 934.888 kb on + strand, within PFR28_00862 at 934.888 kb on + strand, within PFR28_00862 at 934.889 kb on - strand, within PFR28_00862 at 934.889 kb on - strand, within PFR28_00862 at 934.889 kb on - strand, within PFR28_00862 at 934.889 kb on - strand, within PFR28_00862 at 934.889 kb on - strand, within PFR28_00862 at 935.202 kb on + strand at 935.202 kb on + strand at 935.203 kb on - strand at 935.437 kb on + strand at 935.437 kb on + strand at 935.438 kb on - strand at 935.438 kb on - strand at 935.441 kb on + strand at 935.441 kb on + strand at 935.441 kb on + strand at 935.441 kb on + strand at 935.442 kb on - strand at 935.442 kb on - strand at 935.442 kb on - strand at 935.442 kb on - strand at 935.442 kb on - strand at 935.442 kb on - strand at 935.500 kb on - strand at 935.616 kb on + strand, within PFR28_00863 at 935.616 kb on + strand, within PFR28_00863 at 935.616 kb on + strand, within PFR28_00863 at 935.617 kb on - strand, within PFR28_00863 at 935.617 kb on - strand, within PFR28_00863 at 935.617 kb on - strand, within PFR28_00863 at 935.617 kb on - strand, within PFR28_00863 at 935.617 kb on - strand, within PFR28_00863 at 935.685 kb on + strand, within PFR28_00863 at 935.685 kb on + strand, within PFR28_00863 at 935.685 kb on + strand, within PFR28_00863 at 935.686 kb on - strand, within PFR28_00863 at 935.686 kb on - strand, within PFR28_00863 at 935.686 kb on - strand, within PFR28_00863 at 935.693 kb on + strand, within PFR28_00863 at 935.693 kb on + strand, within PFR28_00863 at 935.694 kb on - strand, within PFR28_00863 at 935.694 kb on - strand, within PFR28_00863 at 935.781 kb on + strand, within PFR28_00863 at 935.781 kb on + strand, within PFR28_00863 at 935.781 kb on + strand, within PFR28_00863 at 935.781 kb on + strand, within PFR28_00863 at 935.781 kb on + strand, within PFR28_00863 at 935.782 kb on - strand, within PFR28_00863 at 935.782 kb on - strand, within PFR28_00863 at 935.782 kb on - strand, within PFR28_00863
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C) 10 mM remove 933,426 - -0.3 933,519 + PFR28_00860 0.16 -0.4 933,519 + PFR28_00860 0.16 +0.7 933,519 + PFR28_00860 0.16 +0.5 933,519 + PFR28_00860 0.16 +0.6 933,519 + PFR28_00860 0.16 +0.2 933,520 - PFR28_00860 0.16 -1.1 933,624 + PFR28_00860 0.28 -0.5 933,652 - PFR28_00860 0.31 -0.3 933,866 + PFR28_00860 0.55 -0.2 933,867 - PFR28_00860 0.56 -0.8 933,867 - PFR28_00860 0.56 -1.4 933,867 - PFR28_00860 0.56 +0.0 934,022 + PFR28_00860 0.73 -0.9 934,022 + PFR28_00860 0.73 -0.5 934,022 + PFR28_00860 0.73 -1.1 934,022 + PFR28_00860 0.73 -0.7 934,023 - PFR28_00860 0.73 -1.1 934,023 - PFR28_00860 0.73 -0.9 934,023 - PFR28_00860 0.73 -0.4 934,023 - PFR28_00860 0.73 -1.5 934,023 - PFR28_00860 0.73 -0.3 934,023 - PFR28_00860 0.73 -0.9 934,044 - PFR28_00860 0.75 -1.0 934,259 + -0.8 934,259 + +0.1 934,260 - -0.7 934,260 - -1.4 934,260 - -1.1 934,260 - -0.9 934,340 + -1.1 934,340 + -0.6 934,341 - -1.2 934,413 + PFR28_00861 0.17 -1.2 934,414 - PFR28_00861 0.17 -1.3 934,414 - PFR28_00861 0.17 +1.0 934,414 - PFR28_00861 0.17 -0.4 934,414 - PFR28_00861 0.17 -1.4 934,452 + PFR28_00861 0.25 -0.5 934,452 + PFR28_00861 0.25 -1.0 934,452 + PFR28_00861 0.25 -1.7 934,453 - PFR28_00861 0.25 -0.8 934,453 - PFR28_00861 0.25 -0.7 934,454 + PFR28_00861 0.25 -0.5 934,488 + PFR28_00861 0.32 -1.7 934,488 + PFR28_00861 0.32 -0.9 934,488 + PFR28_00861 0.32 -0.3 934,488 + PFR28_00861 0.32 -1.4 934,488 + PFR28_00861 0.32 -0.8 934,488 + PFR28_00861 0.32 -0.7 934,488 + PFR28_00861 0.32 -1.0 934,488 + PFR28_00861 0.32 -1.4 934,488 + PFR28_00861 0.32 -2.1 934,488 + PFR28_00861 0.32 -1.6 934,488 + PFR28_00861 0.32 -1.2 934,488 + PFR28_00861 0.32 -0.8 934,488 + PFR28_00861 0.32 -1.5 934,488 + PFR28_00861 0.32 -1.3 934,489 - PFR28_00861 0.32 -1.0 934,489 - PFR28_00861 0.32 -0.6 934,489 - PFR28_00861 0.32 -1.4 934,489 - PFR28_00861 0.32 -1.4 934,489 - PFR28_00861 0.32 +0.5 934,489 - PFR28_00861 0.32 -0.7 934,499 + PFR28_00861 0.34 -0.7 934,522 + PFR28_00861 0.39 -1.4 934,522 + PFR28_00861 0.39 -0.8 934,522 + PFR28_00861 0.39 -0.6 934,522 + PFR28_00861 0.39 -0.4 934,522 + PFR28_00861 0.39 -0.2 934,522 + PFR28_00861 0.39 -1.0 934,523 - PFR28_00861 0.39 -1.1 934,523 - PFR28_00861 0.39 -1.5 934,523 - PFR28_00861 0.39 -0.8 934,523 - PFR28_00861 0.39 -1.0 934,523 - PFR28_00861 0.39 -1.6 934,523 - PFR28_00861 0.39 -1.1 934,523 - PFR28_00861 0.39 -1.2 934,523 - PFR28_00861 0.39 -1.9 934,523 - PFR28_00861 0.39 -0.3 934,523 - PFR28_00861 0.39 -1.6 934,523 - PFR28_00861 0.39 -1.3 934,523 - PFR28_00861 0.39 -1.3 934,657 - PFR28_00861 0.67 -0.5 934,657 - PFR28_00861 0.67 -1.6 934,811 + +0.3 934,811 + +0.1 934,811 + -0.2 934,812 - -1.5 934,812 - -1.0 934,832 + -0.7 934,832 + -0.9 934,832 + +0.1 934,832 + -0.7 934,832 + -0.6 934,833 - -0.2 934,888 + PFR28_00862 0.17 -0.7 934,888 + PFR28_00862 0.17 -0.1 934,888 + PFR28_00862 0.17 -0.8 934,889 - PFR28_00862 0.18 +0.3 934,889 - PFR28_00862 0.18 -0.8 934,889 - PFR28_00862 0.18 -1.1 934,889 - PFR28_00862 0.18 -0.9 934,889 - PFR28_00862 0.18 -0.3 935,202 + -0.1 935,202 + -1.4 935,203 - -0.3 935,437 + +1.0 935,437 + +0.2 935,438 - -1.1 935,438 - -0.5 935,441 + +0.4 935,441 + -0.2 935,441 + +0.2 935,441 + +0.8 935,442 - -0.2 935,442 - +0.3 935,442 - +0.7 935,442 - -1.0 935,442 - +3.2 935,442 - -1.1 935,500 - +0.3 935,616 + PFR28_00863 0.37 -1.4 935,616 + PFR28_00863 0.37 -0.0 935,616 + PFR28_00863 0.37 +0.6 935,617 - PFR28_00863 0.37 -1.4 935,617 - PFR28_00863 0.37 -0.1 935,617 - PFR28_00863 0.37 -1.5 935,617 - PFR28_00863 0.37 +0.2 935,617 - PFR28_00863 0.37 +1.3 935,685 + PFR28_00863 0.58 -1.1 935,685 + PFR28_00863 0.58 +0.4 935,685 + PFR28_00863 0.58 +0.4 935,686 - PFR28_00863 0.58 +0.7 935,686 - PFR28_00863 0.58 +0.1 935,686 - PFR28_00863 0.58 +0.2 935,693 + PFR28_00863 0.60 +0.7 935,693 + PFR28_00863 0.60 -1.2 935,694 - PFR28_00863 0.60 -0.2 935,694 - PFR28_00863 0.60 -0.8 935,781 + PFR28_00863 0.87 -0.6 935,781 + PFR28_00863 0.87 -0.5 935,781 + PFR28_00863 0.87 -0.8 935,781 + PFR28_00863 0.87 -0.2 935,781 + PFR28_00863 0.87 +0.3 935,782 - PFR28_00863 0.87 -0.2 935,782 - PFR28_00863 0.87 +0.6 935,782 - PFR28_00863 0.87 +0.6
Or see this region's nucleotide sequence