Experiment: D-Glucose (C) 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFR28_00855 and PFR28_00856 are separated by 47 nucleotides PFR28_00856 and PFR28_00857 overlap by 1 nucleotides PFR28_00857 and PFR28_00858 are separated by 15 nucleotides
PFR28_00855: PFR28_00855 - hypothetical protein, at 927,352 to 929,634
_00855
PFR28_00856: PFR28_00856 - Protein-glutamate methylesterase/protein-glutamine glutaminase 1, at 929,682 to 930,812
_00856
PFR28_00857: PFR28_00857 - Chemotaxis protein PomA, at 930,812 to 931,552
_00857
PFR28_00858: PFR28_00858 - Motility protein B, at 931,568 to 932,452
_00858
Position (kb) 929
930
931 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 928.698 kb on - strand, within PFR28_00855 at 928.964 kb on + strand, within PFR28_00855 at 928.965 kb on - strand, within PFR28_00855 at 928.965 kb on - strand, within PFR28_00855 at 929.038 kb on + strand, within PFR28_00855 at 929.038 kb on + strand, within PFR28_00855 at 929.038 kb on + strand, within PFR28_00855 at 929.038 kb on + strand, within PFR28_00855 at 929.039 kb on - strand, within PFR28_00855 at 929.039 kb on - strand, within PFR28_00855 at 929.039 kb on - strand, within PFR28_00855 at 929.039 kb on - strand, within PFR28_00855 at 929.039 kb on - strand, within PFR28_00855 at 929.039 kb on - strand, within PFR28_00855 at 929.039 kb on - strand, within PFR28_00855 at 929.091 kb on - strand, within PFR28_00855 at 929.371 kb on + strand, within PFR28_00855 at 929.628 kb on + strand at 929.628 kb on + strand at 929.628 kb on + strand at 929.628 kb on + strand at 929.629 kb on - strand at 929.629 kb on - strand at 929.629 kb on - strand at 929.681 kb on + strand at 929.681 kb on + strand at 929.682 kb on - strand at 929.686 kb on + strand at 929.686 kb on + strand at 929.686 kb on + strand at 929.686 kb on + strand at 929.686 kb on + strand at 929.687 kb on - strand at 929.687 kb on - strand at 929.687 kb on - strand at 929.687 kb on - strand at 929.687 kb on - strand at 929.687 kb on - strand at 929.690 kb on + strand at 929.690 kb on + strand at 929.690 kb on + strand at 929.690 kb on + strand at 929.690 kb on + strand at 929.690 kb on + strand at 929.690 kb on + strand at 929.691 kb on - strand at 929.691 kb on - strand at 929.691 kb on - strand at 929.691 kb on - strand at 929.691 kb on - strand at 929.691 kb on - strand at 929.691 kb on - strand at 929.691 kb on - strand at 929.762 kb on + strand at 929.763 kb on - strand at 929.847 kb on + strand, within PFR28_00856 at 929.848 kb on - strand, within PFR28_00856 at 929.888 kb on + strand, within PFR28_00856 at 929.888 kb on + strand, within PFR28_00856 at 929.888 kb on + strand, within PFR28_00856 at 929.888 kb on + strand, within PFR28_00856 at 929.889 kb on - strand, within PFR28_00856 at 929.889 kb on - strand, within PFR28_00856 at 929.889 kb on - strand, within PFR28_00856 at 929.889 kb on - strand, within PFR28_00856 at 930.096 kb on + strand, within PFR28_00856 at 930.096 kb on + strand, within PFR28_00856 at 930.097 kb on - strand, within PFR28_00856 at 930.097 kb on - strand, within PFR28_00856 at 930.097 kb on - strand, within PFR28_00856 at 930.097 kb on - strand, within PFR28_00856 at 930.256 kb on - strand, within PFR28_00856 at 930.549 kb on + strand, within PFR28_00856 at 930.549 kb on + strand, within PFR28_00856 at 930.549 kb on + strand, within PFR28_00856 at 930.549 kb on + strand, within PFR28_00856 at 930.549 kb on + strand, within PFR28_00856 at 930.549 kb on + strand, within PFR28_00856 at 930.550 kb on - strand, within PFR28_00856 at 930.550 kb on - strand, within PFR28_00856 at 930.717 kb on + strand at 930.717 kb on + strand at 930.717 kb on + strand at 930.717 kb on + strand at 930.717 kb on + strand at 930.717 kb on + strand at 930.717 kb on + strand at 930.717 kb on + strand at 930.718 kb on - strand at 930.718 kb on - strand at 930.718 kb on - strand at 930.718 kb on - strand at 930.718 kb on - strand at 930.718 kb on - strand at 930.718 kb on - strand at 930.718 kb on - strand at 930.763 kb on + strand at 930.763 kb on + strand at 930.763 kb on + strand at 930.763 kb on + strand at 930.763 kb on + strand at 930.763 kb on + strand at 930.763 kb on + strand at 930.763 kb on + strand at 930.764 kb on - strand at 930.764 kb on - strand at 930.764 kb on - strand at 930.764 kb on - strand at 930.764 kb on - strand at 930.764 kb on - strand at 930.765 kb on + strand at 930.765 kb on + strand at 930.765 kb on + strand at 930.765 kb on + strand at 930.765 kb on + strand at 930.765 kb on + strand at 930.765 kb on + strand at 930.765 kb on + strand at 930.765 kb on + strand at 930.766 kb on - strand at 930.766 kb on - strand at 930.766 kb on - strand at 930.766 kb on - strand at 930.766 kb on - strand at 930.766 kb on - strand at 930.766 kb on - strand at 930.766 kb on - strand at 930.766 kb on - strand at 930.766 kb on - strand at 930.766 kb on - strand at 930.873 kb on - strand at 930.873 kb on - strand at 930.873 kb on - strand at 931.130 kb on + strand, within PFR28_00857 at 931.130 kb on + strand, within PFR28_00857 at 931.130 kb on + strand, within PFR28_00857 at 931.130 kb on + strand, within PFR28_00857 at 931.130 kb on + strand, within PFR28_00857 at 931.130 kb on + strand, within PFR28_00857 at 931.131 kb on - strand, within PFR28_00857 at 931.131 kb on - strand, within PFR28_00857 at 931.131 kb on - strand, within PFR28_00857 at 931.208 kb on + strand, within PFR28_00857 at 931.209 kb on - strand, within PFR28_00857 at 931.209 kb on - strand, within PFR28_00857 at 931.209 kb on - strand, within PFR28_00857 at 931.209 kb on - strand, within PFR28_00857 at 931.209 kb on - strand, within PFR28_00857 at 931.273 kb on + strand, within PFR28_00857 at 931.273 kb on + strand, within PFR28_00857 at 931.273 kb on + strand, within PFR28_00857 at 931.273 kb on + strand, within PFR28_00857 at 931.273 kb on + strand, within PFR28_00857 at 931.273 kb on + strand, within PFR28_00857 at 931.273 kb on + strand, within PFR28_00857 at 931.273 kb on + strand, within PFR28_00857 at 931.273 kb on + strand, within PFR28_00857 at 931.273 kb on + strand, within PFR28_00857 at 931.273 kb on + strand, within PFR28_00857 at 931.273 kb on + strand, within PFR28_00857 at 931.273 kb on + strand, within PFR28_00857 at 931.274 kb on - strand, within PFR28_00857 at 931.274 kb on - strand, within PFR28_00857 at 931.274 kb on - strand, within PFR28_00857 at 931.274 kb on - strand, within PFR28_00857 at 931.274 kb on - strand, within PFR28_00857 at 931.382 kb on + strand, within PFR28_00857 at 931.382 kb on + strand, within PFR28_00857 at 931.382 kb on + strand, within PFR28_00857 at 931.382 kb on + strand, within PFR28_00857 at 931.383 kb on - strand, within PFR28_00857 at 931.383 kb on - strand, within PFR28_00857 at 931.626 kb on - strand at 931.670 kb on + strand, within PFR28_00858 at 931.671 kb on - strand, within PFR28_00858 at 931.671 kb on - strand, within PFR28_00858 at 931.671 kb on - strand, within PFR28_00858 at 931.671 kb on - strand, within PFR28_00858 at 931.671 kb on - strand, within PFR28_00858 at 931.671 kb on - strand, within PFR28_00858 at 931.671 kb on - strand, within PFR28_00858 at 931.700 kb on + strand, within PFR28_00858 at 931.700 kb on + strand, within PFR28_00858 at 931.700 kb on + strand, within PFR28_00858 at 931.700 kb on + strand, within PFR28_00858 at 931.700 kb on + strand, within PFR28_00858 at 931.700 kb on + strand, within PFR28_00858 at 931.700 kb on + strand, within PFR28_00858 at 931.700 kb on + strand, within PFR28_00858 at 931.700 kb on + strand, within PFR28_00858 at 931.700 kb on + strand, within PFR28_00858 at 931.700 kb on + strand, within PFR28_00858 at 931.700 kb on + strand, within PFR28_00858 at 931.701 kb on - strand, within PFR28_00858 at 931.701 kb on - strand, within PFR28_00858 at 931.701 kb on - strand, within PFR28_00858 at 931.701 kb on - strand, within PFR28_00858 at 931.701 kb on - strand, within PFR28_00858 at 931.701 kb on - strand, within PFR28_00858 at 931.701 kb on - strand, within PFR28_00858 at 931.701 kb on - strand, within PFR28_00858 at 931.701 kb on - strand, within PFR28_00858 at 931.701 kb on - strand, within PFR28_00858 at 931.701 kb on - strand, within PFR28_00858 at 931.701 kb on - strand, within PFR28_00858 at 931.701 kb on - strand, within PFR28_00858 at 931.701 kb on - strand, within PFR28_00858 at 931.701 kb on - strand, within PFR28_00858 at 931.701 kb on - strand, within PFR28_00858 at 931.701 kb on - strand, within PFR28_00858 at 931.736 kb on - strand, within PFR28_00858 at 931.762 kb on + strand, within PFR28_00858
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C) 10 mM remove 928,698 - PFR28_00855 0.59 -1.5 928,964 + PFR28_00855 0.71 -0.4 928,965 - PFR28_00855 0.71 -0.7 928,965 - PFR28_00855 0.71 -1.0 929,038 + PFR28_00855 0.74 -1.0 929,038 + PFR28_00855 0.74 -2.9 929,038 + PFR28_00855 0.74 -0.5 929,038 + PFR28_00855 0.74 -1.7 929,039 - PFR28_00855 0.74 -1.3 929,039 - PFR28_00855 0.74 -2.6 929,039 - PFR28_00855 0.74 -0.6 929,039 - PFR28_00855 0.74 -0.7 929,039 - PFR28_00855 0.74 -0.5 929,039 - PFR28_00855 0.74 -0.0 929,039 - PFR28_00855 0.74 -0.3 929,091 - PFR28_00855 0.76 -2.0 929,371 + PFR28_00855 0.88 -0.4 929,628 + -1.0 929,628 + +0.1 929,628 + -0.5 929,628 + +0.5 929,629 - -0.2 929,629 - -1.3 929,629 - +0.7 929,681 + -0.8 929,681 + -1.2 929,682 - -1.0 929,686 + -0.7 929,686 + +0.1 929,686 + -0.5 929,686 + -0.3 929,686 + +0.1 929,687 - -0.6 929,687 - -0.6 929,687 - -0.3 929,687 - -0.9 929,687 - -1.3 929,687 - -1.9 929,690 + -0.6 929,690 + -0.6 929,690 + -0.3 929,690 + -0.4 929,690 + +0.7 929,690 + -0.2 929,690 + -0.6 929,691 - -0.1 929,691 - -2.2 929,691 - -1.5 929,691 - -0.5 929,691 - -0.1 929,691 - -0.1 929,691 - -1.0 929,691 - +0.2 929,762 + -0.0 929,763 - -1.6 929,847 + PFR28_00856 0.15 -0.6 929,848 - PFR28_00856 0.15 -1.3 929,888 + PFR28_00856 0.18 -1.6 929,888 + PFR28_00856 0.18 -0.9 929,888 + PFR28_00856 0.18 -2.2 929,888 + PFR28_00856 0.18 -1.1 929,889 - PFR28_00856 0.18 -1.2 929,889 - PFR28_00856 0.18 -2.3 929,889 - PFR28_00856 0.18 -0.8 929,889 - PFR28_00856 0.18 -1.1 930,096 + PFR28_00856 0.37 -1.4 930,096 + PFR28_00856 0.37 -1.7 930,097 - PFR28_00856 0.37 -1.3 930,097 - PFR28_00856 0.37 -0.8 930,097 - PFR28_00856 0.37 -0.7 930,097 - PFR28_00856 0.37 -1.2 930,256 - PFR28_00856 0.51 -0.6 930,549 + PFR28_00856 0.77 -1.7 930,549 + PFR28_00856 0.77 +0.2 930,549 + PFR28_00856 0.77 -1.3 930,549 + PFR28_00856 0.77 +0.1 930,549 + PFR28_00856 0.77 -1.8 930,549 + PFR28_00856 0.77 +0.1 930,550 - PFR28_00856 0.77 -0.0 930,550 - PFR28_00856 0.77 -1.4 930,717 + +0.5 930,717 + +0.1 930,717 + -2.9 930,717 + -1.7 930,717 + -1.5 930,717 + -0.3 930,717 + +0.9 930,717 + -2.8 930,718 - +0.1 930,718 - -0.2 930,718 - -1.5 930,718 - -1.5 930,718 - -0.4 930,718 - -0.5 930,718 - -0.1 930,718 - +0.0 930,763 + -2.4 930,763 + -0.3 930,763 + -1.1 930,763 + -0.8 930,763 + -0.4 930,763 + -0.7 930,763 + -0.4 930,763 + +0.2 930,764 - +2.8 930,764 - -1.4 930,764 - -2.1 930,764 - -0.9 930,764 - +0.4 930,764 - -0.3 930,765 + -0.6 930,765 + -1.0 930,765 + +1.8 930,765 + -2.0 930,765 + -1.6 930,765 + +0.5 930,765 + -1.7 930,765 + -0.8 930,765 + -1.4 930,766 - -1.4 930,766 - -0.4 930,766 - -1.2 930,766 - -2.1 930,766 - -1.8 930,766 - +0.0 930,766 - +1.0 930,766 - -0.2 930,766 - -1.2 930,766 - -1.0 930,766 - -1.2 930,873 - -1.0 930,873 - -0.5 930,873 - -1.1 931,130 + PFR28_00857 0.43 -1.2 931,130 + PFR28_00857 0.43 -1.2 931,130 + PFR28_00857 0.43 -1.3 931,130 + PFR28_00857 0.43 +0.0 931,130 + PFR28_00857 0.43 +0.1 931,130 + PFR28_00857 0.43 -1.2 931,131 - PFR28_00857 0.43 -0.5 931,131 - PFR28_00857 0.43 -0.2 931,131 - PFR28_00857 0.43 -0.6 931,208 + PFR28_00857 0.53 -0.0 931,209 - PFR28_00857 0.54 +0.4 931,209 - PFR28_00857 0.54 -0.6 931,209 - PFR28_00857 0.54 +0.2 931,209 - PFR28_00857 0.54 -0.7 931,209 - PFR28_00857 0.54 -0.4 931,273 + PFR28_00857 0.62 +0.6 931,273 + PFR28_00857 0.62 -0.8 931,273 + PFR28_00857 0.62 -1.4 931,273 + PFR28_00857 0.62 +0.1 931,273 + PFR28_00857 0.62 -0.6 931,273 + PFR28_00857 0.62 -0.6 931,273 + PFR28_00857 0.62 -0.3 931,273 + PFR28_00857 0.62 -1.0 931,273 + PFR28_00857 0.62 -0.8 931,273 + PFR28_00857 0.62 -0.2 931,273 + PFR28_00857 0.62 -2.4 931,273 + PFR28_00857 0.62 -0.7 931,273 + PFR28_00857 0.62 -0.6 931,274 - PFR28_00857 0.62 -0.3 931,274 - PFR28_00857 0.62 -2.4 931,274 - PFR28_00857 0.62 -0.3 931,274 - PFR28_00857 0.62 -2.0 931,274 - PFR28_00857 0.62 -0.5 931,382 + PFR28_00857 0.77 +0.0 931,382 + PFR28_00857 0.77 +2.2 931,382 + PFR28_00857 0.77 -1.4 931,382 + PFR28_00857 0.77 -1.5 931,383 - PFR28_00857 0.77 -0.6 931,383 - PFR28_00857 0.77 +0.3 931,626 - -1.8 931,670 + PFR28_00858 0.12 -0.6 931,671 - PFR28_00858 0.12 -0.2 931,671 - PFR28_00858 0.12 -0.1 931,671 - PFR28_00858 0.12 -0.6 931,671 - PFR28_00858 0.12 -0.3 931,671 - PFR28_00858 0.12 -0.4 931,671 - PFR28_00858 0.12 -1.4 931,671 - PFR28_00858 0.12 +1.0 931,700 + PFR28_00858 0.15 -1.3 931,700 + PFR28_00858 0.15 -0.8 931,700 + PFR28_00858 0.15 -0.9 931,700 + PFR28_00858 0.15 -0.7 931,700 + PFR28_00858 0.15 -0.4 931,700 + PFR28_00858 0.15 +0.2 931,700 + PFR28_00858 0.15 -0.5 931,700 + PFR28_00858 0.15 -1.4 931,700 + PFR28_00858 0.15 -0.3 931,700 + PFR28_00858 0.15 +0.6 931,700 + PFR28_00858 0.15 -0.8 931,700 + PFR28_00858 0.15 -1.4 931,701 - PFR28_00858 0.15 -1.0 931,701 - PFR28_00858 0.15 -1.4 931,701 - PFR28_00858 0.15 -0.3 931,701 - PFR28_00858 0.15 +1.0 931,701 - PFR28_00858 0.15 -0.5 931,701 - PFR28_00858 0.15 -0.7 931,701 - PFR28_00858 0.15 -1.1 931,701 - PFR28_00858 0.15 +0.0 931,701 - PFR28_00858 0.15 -0.1 931,701 - PFR28_00858 0.15 -1.4 931,701 - PFR28_00858 0.15 -2.6 931,701 - PFR28_00858 0.15 +1.2 931,701 - PFR28_00858 0.15 -1.7 931,701 - PFR28_00858 0.15 +0.3 931,701 - PFR28_00858 0.15 +0.4 931,701 - PFR28_00858 0.15 -0.8 931,701 - PFR28_00858 0.15 +0.4 931,736 - PFR28_00858 0.19 -0.8 931,762 + PFR28_00858 0.22 -0.1
Or see this region's nucleotide sequence