Experiment: D-Glucose (C) 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFR28_00854 and PFR28_00855 are separated by 258 nucleotides PFR28_00855 and PFR28_00856 are separated by 47 nucleotides
PFR28_00854: PFR28_00854 - Protein phosphatase CheZ, at 926,305 to 927,093
_00854
PFR28_00855: PFR28_00855 - hypothetical protein, at 927,352 to 929,634
_00855
PFR28_00856: PFR28_00856 - Protein-glutamate methylesterase/protein-glutamine glutaminase 1, at 929,682 to 930,812
_00856
Position (kb) 927
928
929
930 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 926.452 kb on + strand, within PFR28_00854 at 926.452 kb on + strand, within PFR28_00854 at 926.452 kb on + strand, within PFR28_00854 at 926.452 kb on + strand, within PFR28_00854 at 926.452 kb on + strand, within PFR28_00854 at 926.575 kb on + strand, within PFR28_00854 at 926.575 kb on + strand, within PFR28_00854 at 926.575 kb on + strand, within PFR28_00854 at 926.575 kb on + strand, within PFR28_00854 at 926.575 kb on + strand, within PFR28_00854 at 926.576 kb on - strand, within PFR28_00854 at 926.576 kb on - strand, within PFR28_00854 at 926.827 kb on + strand, within PFR28_00854 at 927.028 kb on - strand at 927.099 kb on + strand at 927.099 kb on + strand at 927.099 kb on + strand at 927.099 kb on + strand at 927.100 kb on - strand at 927.100 kb on - strand at 927.100 kb on - strand at 927.120 kb on - strand at 927.180 kb on + strand at 927.198 kb on + strand at 927.328 kb on + strand at 927.328 kb on + strand at 927.328 kb on + strand at 927.328 kb on + strand at 927.328 kb on + strand at 927.328 kb on + strand at 927.328 kb on + strand at 927.329 kb on - strand at 927.329 kb on - strand at 927.337 kb on + strand at 927.338 kb on - strand at 927.350 kb on + strand at 927.413 kb on + strand at 927.413 kb on + strand at 927.413 kb on + strand at 927.413 kb on + strand at 927.414 kb on - strand at 927.503 kb on + strand at 927.503 kb on + strand at 927.503 kb on + strand at 927.503 kb on + strand at 927.503 kb on + strand at 927.503 kb on + strand at 927.503 kb on + strand at 927.504 kb on - strand at 927.504 kb on - strand at 927.504 kb on - strand at 927.504 kb on - strand at 927.504 kb on - strand at 928.095 kb on - strand, within PFR28_00855 at 928.543 kb on - strand, within PFR28_00855 at 928.698 kb on - strand, within PFR28_00855 at 928.964 kb on + strand, within PFR28_00855 at 928.965 kb on - strand, within PFR28_00855 at 928.965 kb on - strand, within PFR28_00855 at 929.038 kb on + strand, within PFR28_00855 at 929.038 kb on + strand, within PFR28_00855 at 929.038 kb on + strand, within PFR28_00855 at 929.038 kb on + strand, within PFR28_00855 at 929.039 kb on - strand, within PFR28_00855 at 929.039 kb on - strand, within PFR28_00855 at 929.039 kb on - strand, within PFR28_00855 at 929.039 kb on - strand, within PFR28_00855 at 929.039 kb on - strand, within PFR28_00855 at 929.039 kb on - strand, within PFR28_00855 at 929.039 kb on - strand, within PFR28_00855 at 929.091 kb on - strand, within PFR28_00855 at 929.371 kb on + strand, within PFR28_00855 at 929.628 kb on + strand at 929.628 kb on + strand at 929.628 kb on + strand at 929.628 kb on + strand at 929.629 kb on - strand at 929.629 kb on - strand at 929.629 kb on - strand at 929.681 kb on + strand at 929.681 kb on + strand at 929.682 kb on - strand at 929.686 kb on + strand at 929.686 kb on + strand at 929.686 kb on + strand at 929.686 kb on + strand at 929.686 kb on + strand at 929.687 kb on - strand at 929.687 kb on - strand at 929.687 kb on - strand at 929.687 kb on - strand at 929.687 kb on - strand at 929.687 kb on - strand at 929.690 kb on + strand at 929.690 kb on + strand at 929.690 kb on + strand at 929.690 kb on + strand at 929.690 kb on + strand at 929.690 kb on + strand at 929.690 kb on + strand at 929.691 kb on - strand at 929.691 kb on - strand at 929.691 kb on - strand at 929.691 kb on - strand at 929.691 kb on - strand at 929.691 kb on - strand at 929.691 kb on - strand at 929.691 kb on - strand at 929.762 kb on + strand at 929.763 kb on - strand at 929.847 kb on + strand, within PFR28_00856 at 929.848 kb on - strand, within PFR28_00856 at 929.888 kb on + strand, within PFR28_00856 at 929.888 kb on + strand, within PFR28_00856 at 929.888 kb on + strand, within PFR28_00856 at 929.888 kb on + strand, within PFR28_00856 at 929.889 kb on - strand, within PFR28_00856 at 929.889 kb on - strand, within PFR28_00856 at 929.889 kb on - strand, within PFR28_00856 at 929.889 kb on - strand, within PFR28_00856 at 930.096 kb on + strand, within PFR28_00856 at 930.096 kb on + strand, within PFR28_00856 at 930.097 kb on - strand, within PFR28_00856 at 930.097 kb on - strand, within PFR28_00856 at 930.097 kb on - strand, within PFR28_00856 at 930.097 kb on - strand, within PFR28_00856 at 930.256 kb on - strand, within PFR28_00856 at 930.549 kb on + strand, within PFR28_00856 at 930.549 kb on + strand, within PFR28_00856 at 930.549 kb on + strand, within PFR28_00856 at 930.549 kb on + strand, within PFR28_00856 at 930.549 kb on + strand, within PFR28_00856 at 930.549 kb on + strand, within PFR28_00856 at 930.550 kb on - strand, within PFR28_00856 at 930.550 kb on - strand, within PFR28_00856
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C) 10 mM remove 926,452 + PFR28_00854 0.19 -0.7 926,452 + PFR28_00854 0.19 +1.0 926,452 + PFR28_00854 0.19 -0.5 926,452 + PFR28_00854 0.19 -0.1 926,452 + PFR28_00854 0.19 -0.5 926,575 + PFR28_00854 0.34 -0.5 926,575 + PFR28_00854 0.34 +0.3 926,575 + PFR28_00854 0.34 +0.4 926,575 + PFR28_00854 0.34 -0.7 926,575 + PFR28_00854 0.34 +0.5 926,576 - PFR28_00854 0.34 -1.3 926,576 - PFR28_00854 0.34 -1.6 926,827 + PFR28_00854 0.66 -1.1 927,028 - -1.0 927,099 + +1.2 927,099 + +0.8 927,099 + +0.0 927,099 + -0.0 927,100 - -1.8 927,100 - +1.8 927,100 - -2.3 927,120 - -0.1 927,180 + +0.2 927,198 + -1.6 927,328 + -0.8 927,328 + +0.3 927,328 + -0.3 927,328 + -0.2 927,328 + -0.3 927,328 + +0.3 927,328 + -0.0 927,329 - -1.8 927,329 - -0.1 927,337 + -0.2 927,338 - -1.0 927,350 + +1.2 927,413 + -0.8 927,413 + -0.6 927,413 + -1.5 927,413 + -1.0 927,414 - -1.5 927,503 + -1.5 927,503 + -1.0 927,503 + -0.0 927,503 + -1.9 927,503 + -1.0 927,503 + -1.7 927,503 + -0.6 927,504 - -1.1 927,504 - -0.5 927,504 - +0.2 927,504 - -1.4 927,504 - -0.8 928,095 - PFR28_00855 0.33 -1.1 928,543 - PFR28_00855 0.52 -1.4 928,698 - PFR28_00855 0.59 -1.5 928,964 + PFR28_00855 0.71 -0.4 928,965 - PFR28_00855 0.71 -0.7 928,965 - PFR28_00855 0.71 -1.0 929,038 + PFR28_00855 0.74 -1.0 929,038 + PFR28_00855 0.74 -2.9 929,038 + PFR28_00855 0.74 -0.5 929,038 + PFR28_00855 0.74 -1.7 929,039 - PFR28_00855 0.74 -1.3 929,039 - PFR28_00855 0.74 -2.6 929,039 - PFR28_00855 0.74 -0.6 929,039 - PFR28_00855 0.74 -0.7 929,039 - PFR28_00855 0.74 -0.5 929,039 - PFR28_00855 0.74 -0.0 929,039 - PFR28_00855 0.74 -0.3 929,091 - PFR28_00855 0.76 -2.0 929,371 + PFR28_00855 0.88 -0.4 929,628 + -1.0 929,628 + +0.1 929,628 + -0.5 929,628 + +0.5 929,629 - -0.2 929,629 - -1.3 929,629 - +0.7 929,681 + -0.8 929,681 + -1.2 929,682 - -1.0 929,686 + -0.7 929,686 + +0.1 929,686 + -0.5 929,686 + -0.3 929,686 + +0.1 929,687 - -0.6 929,687 - -0.6 929,687 - -0.3 929,687 - -0.9 929,687 - -1.3 929,687 - -1.9 929,690 + -0.6 929,690 + -0.6 929,690 + -0.3 929,690 + -0.4 929,690 + +0.7 929,690 + -0.2 929,690 + -0.6 929,691 - -0.1 929,691 - -2.2 929,691 - -1.5 929,691 - -0.5 929,691 - -0.1 929,691 - -0.1 929,691 - -1.0 929,691 - +0.2 929,762 + -0.0 929,763 - -1.6 929,847 + PFR28_00856 0.15 -0.6 929,848 - PFR28_00856 0.15 -1.3 929,888 + PFR28_00856 0.18 -1.6 929,888 + PFR28_00856 0.18 -0.9 929,888 + PFR28_00856 0.18 -2.2 929,888 + PFR28_00856 0.18 -1.1 929,889 - PFR28_00856 0.18 -1.2 929,889 - PFR28_00856 0.18 -2.3 929,889 - PFR28_00856 0.18 -0.8 929,889 - PFR28_00856 0.18 -1.1 930,096 + PFR28_00856 0.37 -1.4 930,096 + PFR28_00856 0.37 -1.7 930,097 - PFR28_00856 0.37 -1.3 930,097 - PFR28_00856 0.37 -0.8 930,097 - PFR28_00856 0.37 -0.7 930,097 - PFR28_00856 0.37 -1.2 930,256 - PFR28_00856 0.51 -0.6 930,549 + PFR28_00856 0.77 -1.7 930,549 + PFR28_00856 0.77 +0.2 930,549 + PFR28_00856 0.77 -1.3 930,549 + PFR28_00856 0.77 +0.1 930,549 + PFR28_00856 0.77 -1.8 930,549 + PFR28_00856 0.77 +0.1 930,550 - PFR28_00856 0.77 -0.0 930,550 - PFR28_00856 0.77 -1.4
Or see this region's nucleotide sequence