Experiment: D-Glucose (C) 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFR28_00808 and PFR28_00809 are separated by 10 nucleotides PFR28_00809 and PFR28_00810 are separated by 13 nucleotides
PFR28_00808: PFR28_00808 - hypothetical protein, at 875,438 to 876,754
_00808
PFR28_00809: PFR28_00809 - hypothetical protein, at 876,765 to 878,831
_00809
PFR28_00810: PFR28_00810 - hypothetical protein, at 878,845 to 880,410
_00810
Position (kb) 876
877
878
879 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 876.057 kb on + strand, within PFR28_00808 at 876.210 kb on - strand, within PFR28_00808 at 876.338 kb on + strand, within PFR28_00808 at 876.527 kb on + strand, within PFR28_00808 at 876.528 kb on - strand, within PFR28_00808 at 876.528 kb on - strand, within PFR28_00808 at 876.528 kb on - strand, within PFR28_00808 at 876.536 kb on + strand, within PFR28_00808 at 876.536 kb on + strand, within PFR28_00808 at 876.536 kb on + strand, within PFR28_00808 at 876.671 kb on + strand at 876.671 kb on + strand at 876.671 kb on + strand at 876.672 kb on - strand at 876.672 kb on - strand at 876.693 kb on + strand at 876.693 kb on + strand at 876.694 kb on - strand at 876.694 kb on - strand at 876.714 kb on - strand at 876.722 kb on + strand at 876.750 kb on + strand at 876.750 kb on + strand at 876.750 kb on + strand at 876.750 kb on + strand at 876.750 kb on + strand at 876.750 kb on + strand at 876.751 kb on - strand at 876.751 kb on - strand at 876.751 kb on - strand at 876.751 kb on - strand at 876.751 kb on - strand at 876.752 kb on + strand at 876.752 kb on + strand at 876.753 kb on - strand at 876.753 kb on - strand at 876.753 kb on - strand at 876.753 kb on - strand at 876.958 kb on + strand at 876.959 kb on - strand at 876.960 kb on + strand at 876.960 kb on + strand at 876.960 kb on + strand at 876.960 kb on + strand at 876.960 kb on + strand at 876.960 kb on + strand at 876.960 kb on + strand at 876.960 kb on + strand at 876.960 kb on + strand at 876.960 kb on + strand at 876.961 kb on - strand at 876.961 kb on - strand at 876.961 kb on - strand at 876.961 kb on - strand at 876.961 kb on - strand at 876.961 kb on - strand at 876.961 kb on - strand at 876.961 kb on - strand at 876.961 kb on - strand at 876.961 kb on - strand at 876.961 kb on - strand at 876.961 kb on - strand at 876.962 kb on + strand at 876.962 kb on + strand at 876.962 kb on + strand at 876.962 kb on + strand at 876.962 kb on + strand at 876.962 kb on + strand at 876.962 kb on + strand at 876.962 kb on + strand at 876.962 kb on + strand at 876.962 kb on + strand at 876.962 kb on + strand at 876.963 kb on - strand at 876.963 kb on - strand at 876.963 kb on - strand at 876.963 kb on - strand at 876.963 kb on - strand at 876.963 kb on - strand at 876.963 kb on - strand at 876.963 kb on - strand at 876.963 kb on - strand at 876.963 kb on - strand at 876.963 kb on - strand at 876.963 kb on - strand at 876.969 kb on + strand at 876.969 kb on + strand at 876.969 kb on + strand at 876.970 kb on - strand at 876.970 kb on - strand at 876.970 kb on - strand at 877.434 kb on + strand, within PFR28_00809 at 877.434 kb on + strand, within PFR28_00809 at 877.434 kb on + strand, within PFR28_00809 at 877.434 kb on + strand, within PFR28_00809 at 877.434 kb on + strand, within PFR28_00809 at 877.434 kb on + strand, within PFR28_00809 at 877.435 kb on - strand, within PFR28_00809 at 877.435 kb on - strand, within PFR28_00809 at 877.435 kb on - strand, within PFR28_00809 at 877.435 kb on - strand, within PFR28_00809 at 877.435 kb on - strand, within PFR28_00809 at 877.435 kb on - strand, within PFR28_00809 at 877.435 kb on - strand, within PFR28_00809 at 877.435 kb on - strand, within PFR28_00809 at 877.435 kb on - strand, within PFR28_00809 at 877.435 kb on - strand, within PFR28_00809 at 877.435 kb on - strand, within PFR28_00809 at 877.435 kb on - strand, within PFR28_00809 at 877.435 kb on - strand, within PFR28_00809 at 877.469 kb on + strand, within PFR28_00809 at 877.470 kb on - strand, within PFR28_00809 at 877.470 kb on - strand, within PFR28_00809 at 877.478 kb on + strand, within PFR28_00809 at 877.478 kb on + strand, within PFR28_00809 at 877.479 kb on - strand, within PFR28_00809 at 877.572 kb on - strand, within PFR28_00809 at 877.615 kb on + strand, within PFR28_00809 at 877.616 kb on - strand, within PFR28_00809 at 877.676 kb on + strand, within PFR28_00809 at 877.676 kb on + strand, within PFR28_00809 at 877.676 kb on + strand, within PFR28_00809 at 877.676 kb on + strand, within PFR28_00809 at 877.677 kb on - strand, within PFR28_00809 at 877.677 kb on - strand, within PFR28_00809 at 877.677 kb on - strand, within PFR28_00809 at 877.677 kb on - strand, within PFR28_00809 at 877.784 kb on + strand, within PFR28_00809 at 877.851 kb on + strand, within PFR28_00809 at 877.851 kb on + strand, within PFR28_00809 at 877.851 kb on + strand, within PFR28_00809 at 877.853 kb on + strand, within PFR28_00809 at 877.853 kb on + strand, within PFR28_00809 at 877.853 kb on + strand, within PFR28_00809 at 877.853 kb on + strand, within PFR28_00809 at 877.853 kb on + strand, within PFR28_00809 at 877.854 kb on - strand, within PFR28_00809 at 877.854 kb on - strand, within PFR28_00809 at 877.854 kb on - strand, within PFR28_00809 at 877.881 kb on + strand, within PFR28_00809 at 877.881 kb on + strand, within PFR28_00809 at 877.882 kb on - strand, within PFR28_00809 at 877.882 kb on - strand, within PFR28_00809 at 877.883 kb on + strand, within PFR28_00809 at 877.883 kb on + strand, within PFR28_00809 at 877.883 kb on + strand, within PFR28_00809 at 877.883 kb on + strand, within PFR28_00809 at 877.883 kb on + strand, within PFR28_00809 at 877.883 kb on + strand, within PFR28_00809 at 877.883 kb on + strand, within PFR28_00809 at 877.883 kb on + strand, within PFR28_00809 at 877.884 kb on - strand, within PFR28_00809 at 877.884 kb on - strand, within PFR28_00809 at 877.884 kb on - strand, within PFR28_00809 at 877.884 kb on - strand, within PFR28_00809 at 877.884 kb on - strand, within PFR28_00809 at 877.884 kb on - strand, within PFR28_00809 at 877.884 kb on - strand, within PFR28_00809 at 877.884 kb on - strand, within PFR28_00809 at 877.888 kb on + strand, within PFR28_00809 at 877.888 kb on + strand, within PFR28_00809 at 877.888 kb on + strand, within PFR28_00809 at 877.888 kb on + strand, within PFR28_00809 at 877.889 kb on - strand, within PFR28_00809 at 877.889 kb on - strand, within PFR28_00809 at 877.889 kb on - strand, within PFR28_00809 at 877.889 kb on - strand, within PFR28_00809 at 877.889 kb on - strand, within PFR28_00809 at 877.889 kb on - strand, within PFR28_00809 at 877.889 kb on - strand, within PFR28_00809 at 877.889 kb on - strand, within PFR28_00809 at 878.178 kb on + strand, within PFR28_00809 at 878.178 kb on + strand, within PFR28_00809 at 878.178 kb on + strand, within PFR28_00809 at 878.178 kb on + strand, within PFR28_00809 at 878.178 kb on + strand, within PFR28_00809 at 878.178 kb on + strand, within PFR28_00809 at 878.178 kb on + strand, within PFR28_00809 at 878.179 kb on - strand, within PFR28_00809 at 878.179 kb on - strand, within PFR28_00809 at 878.179 kb on - strand, within PFR28_00809 at 878.179 kb on - strand, within PFR28_00809 at 878.280 kb on + strand, within PFR28_00809 at 878.280 kb on + strand, within PFR28_00809 at 878.280 kb on + strand, within PFR28_00809 at 878.281 kb on - strand, within PFR28_00809 at 878.288 kb on - strand, within PFR28_00809 at 878.307 kb on - strand, within PFR28_00809 at 878.602 kb on - strand, within PFR28_00809 at 878.614 kb on + strand, within PFR28_00809 at 878.615 kb on - strand, within PFR28_00809 at 878.615 kb on - strand, within PFR28_00809 at 878.760 kb on + strand at 878.760 kb on + strand at 878.760 kb on + strand at 878.761 kb on - strand at 878.761 kb on - strand at 878.761 kb on - strand at 878.761 kb on - strand at 878.763 kb on + strand at 878.763 kb on + strand at 878.763 kb on + strand at 878.763 kb on + strand at 878.763 kb on + strand at 878.763 kb on + strand at 878.763 kb on + strand at 878.764 kb on - strand at 878.764 kb on - strand at 878.764 kb on - strand at 878.764 kb on - strand at 878.764 kb on - strand at 878.764 kb on - strand at 878.764 kb on - strand at 878.840 kb on - strand at 878.840 kb on - strand at 878.856 kb on + strand at 878.856 kb on + strand at 878.857 kb on - strand at 878.857 kb on - strand at 878.857 kb on - strand at 878.857 kb on - strand at 878.870 kb on - strand at 878.890 kb on + strand at 878.890 kb on + strand at 878.890 kb on + strand at 878.891 kb on - strand at 878.912 kb on + strand at 878.999 kb on + strand at 878.999 kb on + strand at 879.000 kb on - strand at 879.000 kb on - strand at 879.148 kb on + strand, within PFR28_00810 at 879.149 kb on - strand, within PFR28_00810 at 879.149 kb on - strand, within PFR28_00810 at 879.149 kb on - strand, within PFR28_00810 at 879.244 kb on + strand, within PFR28_00810 at 879.244 kb on + strand, within PFR28_00810 at 879.244 kb on + strand, within PFR28_00810 at 879.244 kb on + strand, within PFR28_00810 at 879.244 kb on + strand, within PFR28_00810 at 879.244 kb on + strand, within PFR28_00810 at 879.244 kb on + strand, within PFR28_00810 at 879.244 kb on + strand, within PFR28_00810 at 879.244 kb on + strand, within PFR28_00810 at 879.244 kb on + strand, within PFR28_00810 at 879.245 kb on - strand, within PFR28_00810 at 879.245 kb on - strand, within PFR28_00810 at 879.245 kb on - strand, within PFR28_00810 at 879.245 kb on - strand, within PFR28_00810 at 879.245 kb on - strand, within PFR28_00810 at 879.245 kb on - strand, within PFR28_00810 at 879.245 kb on - strand, within PFR28_00810 at 879.245 kb on - strand, within PFR28_00810 at 879.304 kb on + strand, within PFR28_00810 at 879.304 kb on + strand, within PFR28_00810 at 879.304 kb on + strand, within PFR28_00810 at 879.304 kb on + strand, within PFR28_00810 at 879.304 kb on + strand, within PFR28_00810 at 879.304 kb on + strand, within PFR28_00810 at 879.305 kb on - strand, within PFR28_00810 at 879.305 kb on - strand, within PFR28_00810 at 879.305 kb on - strand, within PFR28_00810 at 879.305 kb on - strand, within PFR28_00810 at 879.310 kb on + strand, within PFR28_00810 at 879.310 kb on + strand, within PFR28_00810 at 879.310 kb on + strand, within PFR28_00810 at 879.310 kb on + strand, within PFR28_00810 at 879.310 kb on + strand, within PFR28_00810 at 879.310 kb on + strand, within PFR28_00810 at 879.310 kb on + strand, within PFR28_00810 at 879.310 kb on + strand, within PFR28_00810 at 879.310 kb on + strand, within PFR28_00810 at 879.310 kb on + strand, within PFR28_00810 at 879.311 kb on - strand, within PFR28_00810 at 879.311 kb on - strand, within PFR28_00810 at 879.311 kb on - strand, within PFR28_00810 at 879.311 kb on - strand, within PFR28_00810 at 879.311 kb on - strand, within PFR28_00810 at 879.311 kb on - strand, within PFR28_00810 at 879.311 kb on - strand, within PFR28_00810 at 879.311 kb on - strand, within PFR28_00810 at 879.311 kb on - strand, within PFR28_00810 at 879.311 kb on - strand, within PFR28_00810 at 879.311 kb on - strand, within PFR28_00810 at 879.311 kb on - strand, within PFR28_00810 at 879.311 kb on - strand, within PFR28_00810 at 879.311 kb on - strand, within PFR28_00810 at 879.312 kb on + strand, within PFR28_00810 at 879.408 kb on + strand, within PFR28_00810 at 879.409 kb on - strand, within PFR28_00810 at 879.409 kb on - strand, within PFR28_00810 at 879.499 kb on + strand, within PFR28_00810 at 879.499 kb on + strand, within PFR28_00810 at 879.500 kb on - strand, within PFR28_00810 at 879.500 kb on - strand, within PFR28_00810 at 879.500 kb on - strand, within PFR28_00810 at 879.529 kb on + strand, within PFR28_00810 at 879.529 kb on + strand, within PFR28_00810 at 879.529 kb on + strand, within PFR28_00810 at 879.529 kb on + strand, within PFR28_00810 at 879.529 kb on + strand, within PFR28_00810 at 879.530 kb on - strand, within PFR28_00810 at 879.553 kb on - strand, within PFR28_00810 at 879.582 kb on + strand, within PFR28_00810 at 879.583 kb on - strand, within PFR28_00810 at 879.729 kb on + strand, within PFR28_00810 at 879.730 kb on - strand, within PFR28_00810 at 879.730 kb on - strand, within PFR28_00810 at 879.736 kb on - strand, within PFR28_00810 at 879.736 kb on - strand, within PFR28_00810
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C) 10 mM remove 876,057 + PFR28_00808 0.47 -0.9 876,210 - PFR28_00808 0.59 -0.6 876,338 + PFR28_00808 0.68 -1.1 876,527 + PFR28_00808 0.83 -1.7 876,528 - PFR28_00808 0.83 -0.9 876,528 - PFR28_00808 0.83 -0.9 876,528 - PFR28_00808 0.83 -0.1 876,536 + PFR28_00808 0.83 -0.6 876,536 + PFR28_00808 0.83 -1.6 876,536 + PFR28_00808 0.83 -2.7 876,671 + -0.4 876,671 + -3.0 876,671 + -0.9 876,672 - -0.4 876,672 - -0.9 876,693 + -0.5 876,693 + +0.4 876,694 - +0.7 876,694 - -0.8 876,714 - -1.2 876,722 + +0.2 876,750 + -0.4 876,750 + +0.2 876,750 + +0.3 876,750 + +0.4 876,750 + -0.2 876,750 + -2.0 876,751 - -1.6 876,751 - -0.9 876,751 - -2.4 876,751 - -1.0 876,751 - -0.6 876,752 + -0.3 876,752 + +2.3 876,753 - -1.6 876,753 - -0.2 876,753 - -0.3 876,753 - -0.4 876,958 + -1.1 876,959 - +0.6 876,960 + -1.0 876,960 + -0.6 876,960 + -0.8 876,960 + -0.1 876,960 + -2.4 876,960 + +0.2 876,960 + -0.3 876,960 + -2.0 876,960 + -0.8 876,960 + -1.0 876,961 - -1.5 876,961 - -0.8 876,961 - -0.1 876,961 - -0.8 876,961 - -1.2 876,961 - -0.7 876,961 - +0.2 876,961 - -0.5 876,961 - -0.8 876,961 - -2.3 876,961 - -1.6 876,961 - -0.3 876,962 + -0.3 876,962 + -0.3 876,962 + -1.4 876,962 + -0.9 876,962 + -0.9 876,962 + -1.6 876,962 + -1.6 876,962 + -0.4 876,962 + -1.1 876,962 + -1.0 876,962 + -0.6 876,963 - -2.5 876,963 - +0.4 876,963 - -1.1 876,963 - -0.8 876,963 - -1.5 876,963 - -1.0 876,963 - -1.7 876,963 - -0.6 876,963 - -0.8 876,963 - -0.6 876,963 - -0.2 876,963 - -1.8 876,969 + -1.8 876,969 + -0.7 876,969 + -0.2 876,970 - -1.2 876,970 - -0.7 876,970 - -0.3 877,434 + PFR28_00809 0.32 -1.2 877,434 + PFR28_00809 0.32 -1.0 877,434 + PFR28_00809 0.32 -2.2 877,434 + PFR28_00809 0.32 -0.5 877,434 + PFR28_00809 0.32 -2.4 877,434 + PFR28_00809 0.32 -0.9 877,435 - PFR28_00809 0.32 -0.1 877,435 - PFR28_00809 0.32 -0.7 877,435 - PFR28_00809 0.32 -1.0 877,435 - PFR28_00809 0.32 -0.4 877,435 - PFR28_00809 0.32 -1.2 877,435 - PFR28_00809 0.32 -0.0 877,435 - PFR28_00809 0.32 -0.8 877,435 - PFR28_00809 0.32 -1.3 877,435 - PFR28_00809 0.32 -0.1 877,435 - PFR28_00809 0.32 -1.0 877,435 - PFR28_00809 0.32 -0.4 877,435 - PFR28_00809 0.32 -1.1 877,435 - PFR28_00809 0.32 -0.7 877,469 + PFR28_00809 0.34 -1.1 877,470 - PFR28_00809 0.34 -1.1 877,470 - PFR28_00809 0.34 -0.8 877,478 + PFR28_00809 0.34 -0.8 877,478 + PFR28_00809 0.34 -0.6 877,479 - PFR28_00809 0.35 -0.5 877,572 - PFR28_00809 0.39 -0.9 877,615 + PFR28_00809 0.41 -0.8 877,616 - PFR28_00809 0.41 -1.1 877,676 + PFR28_00809 0.44 -1.3 877,676 + PFR28_00809 0.44 -1.3 877,676 + PFR28_00809 0.44 -0.4 877,676 + PFR28_00809 0.44 -3.1 877,677 - PFR28_00809 0.44 -0.7 877,677 - PFR28_00809 0.44 -2.6 877,677 - PFR28_00809 0.44 -1.8 877,677 - PFR28_00809 0.44 -1.4 877,784 + PFR28_00809 0.49 -0.6 877,851 + PFR28_00809 0.53 +0.3 877,851 + PFR28_00809 0.53 -1.0 877,851 + PFR28_00809 0.53 -1.5 877,853 + PFR28_00809 0.53 -0.2 877,853 + PFR28_00809 0.53 +0.2 877,853 + PFR28_00809 0.53 -1.5 877,853 + PFR28_00809 0.53 -0.6 877,853 + PFR28_00809 0.53 -1.3 877,854 - PFR28_00809 0.53 -1.4 877,854 - PFR28_00809 0.53 -1.1 877,854 - PFR28_00809 0.53 -0.4 877,881 + PFR28_00809 0.54 -0.7 877,881 + PFR28_00809 0.54 -0.2 877,882 - PFR28_00809 0.54 -1.5 877,882 - PFR28_00809 0.54 -0.7 877,883 + PFR28_00809 0.54 -1.4 877,883 + PFR28_00809 0.54 -1.2 877,883 + PFR28_00809 0.54 -1.2 877,883 + PFR28_00809 0.54 -0.8 877,883 + PFR28_00809 0.54 -0.4 877,883 + PFR28_00809 0.54 -1.1 877,883 + PFR28_00809 0.54 -1.4 877,883 + PFR28_00809 0.54 -2.7 877,884 - PFR28_00809 0.54 -0.3 877,884 - PFR28_00809 0.54 -0.1 877,884 - PFR28_00809 0.54 -0.3 877,884 - PFR28_00809 0.54 -0.4 877,884 - PFR28_00809 0.54 -0.8 877,884 - PFR28_00809 0.54 -0.7 877,884 - PFR28_00809 0.54 -1.2 877,884 - PFR28_00809 0.54 -0.3 877,888 + PFR28_00809 0.54 -0.2 877,888 + PFR28_00809 0.54 -0.8 877,888 + PFR28_00809 0.54 -0.7 877,888 + PFR28_00809 0.54 -1.9 877,889 - PFR28_00809 0.54 -0.5 877,889 - PFR28_00809 0.54 -0.8 877,889 - PFR28_00809 0.54 -0.8 877,889 - PFR28_00809 0.54 -0.4 877,889 - PFR28_00809 0.54 -0.3 877,889 - PFR28_00809 0.54 -0.8 877,889 - PFR28_00809 0.54 -0.9 877,889 - PFR28_00809 0.54 -1.1 878,178 + PFR28_00809 0.68 -0.2 878,178 + PFR28_00809 0.68 -1.1 878,178 + PFR28_00809 0.68 -0.3 878,178 + PFR28_00809 0.68 -0.2 878,178 + PFR28_00809 0.68 +0.3 878,178 + PFR28_00809 0.68 +0.2 878,178 + PFR28_00809 0.68 -1.4 878,179 - PFR28_00809 0.68 -0.9 878,179 - PFR28_00809 0.68 -0.8 878,179 - PFR28_00809 0.68 -1.8 878,179 - PFR28_00809 0.68 -0.8 878,280 + PFR28_00809 0.73 -0.6 878,280 + PFR28_00809 0.73 +0.2 878,280 + PFR28_00809 0.73 -1.5 878,281 - PFR28_00809 0.73 -0.5 878,288 - PFR28_00809 0.74 +0.3 878,307 - PFR28_00809 0.75 -2.4 878,602 - PFR28_00809 0.89 +0.6 878,614 + PFR28_00809 0.89 -0.8 878,615 - PFR28_00809 0.90 +0.6 878,615 - PFR28_00809 0.90 -0.9 878,760 + -1.3 878,760 + -0.1 878,760 + -0.9 878,761 - -0.2 878,761 - -0.7 878,761 - -0.6 878,761 - -0.8 878,763 + -0.1 878,763 + -0.9 878,763 + -1.0 878,763 + -1.4 878,763 + -0.9 878,763 + -0.1 878,763 + -0.4 878,764 - -0.2 878,764 - +0.7 878,764 - 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PFR28_00810 0.26 -1.5 879,304 + PFR28_00810 0.29 -1.2 879,304 + PFR28_00810 0.29 -1.4 879,304 + PFR28_00810 0.29 -0.2 879,304 + PFR28_00810 0.29 -0.1 879,304 + PFR28_00810 0.29 -1.4 879,304 + PFR28_00810 0.29 -1.0 879,305 - PFR28_00810 0.29 -0.8 879,305 - PFR28_00810 0.29 -0.7 879,305 - PFR28_00810 0.29 -0.8 879,305 - PFR28_00810 0.29 -0.6 879,310 + PFR28_00810 0.30 -0.4 879,310 + PFR28_00810 0.30 -0.4 879,310 + PFR28_00810 0.30 -0.3 879,310 + PFR28_00810 0.30 -1.4 879,310 + PFR28_00810 0.30 +0.2 879,310 + PFR28_00810 0.30 -1.0 879,310 + PFR28_00810 0.30 -1.0 879,310 + PFR28_00810 0.30 -0.4 879,310 + PFR28_00810 0.30 -0.5 879,310 + PFR28_00810 0.30 -1.1 879,311 - PFR28_00810 0.30 -0.8 879,311 - PFR28_00810 0.30 -0.9 879,311 - PFR28_00810 0.30 -1.7 879,311 - PFR28_00810 0.30 -0.7 879,311 - PFR28_00810 0.30 -0.3 879,311 - PFR28_00810 0.30 -0.9 879,311 - PFR28_00810 0.30 -0.5 879,311 - PFR28_00810 0.30 -0.2 879,311 - PFR28_00810 0.30 -1.3 879,311 - PFR28_00810 0.30 -0.8 879,311 - PFR28_00810 0.30 -0.7 879,311 - 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Or see this region's nucleotide sequence