Experiment: D-Glucose (C) 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFR28_00807 and PFR28_00808 are separated by 10 nucleotides PFR28_00808 and PFR28_00809 are separated by 10 nucleotides
PFR28_00807: PFR28_00807 - Flagellar P-ring protein, at 874,321 to 875,427
_00807
PFR28_00808: PFR28_00808 - hypothetical protein, at 875,438 to 876,754
_00808
PFR28_00809: PFR28_00809 - hypothetical protein, at 876,765 to 878,831
_00809
Position (kb) 875
876
877 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 874.663 kb on - strand, within PFR28_00807 at 874.663 kb on - strand, within PFR28_00807 at 874.730 kb on - strand, within PFR28_00807 at 874.730 kb on - strand, within PFR28_00807 at 875.035 kb on + strand, within PFR28_00807 at 875.035 kb on + strand, within PFR28_00807 at 875.035 kb on + strand, within PFR28_00807 at 875.035 kb on + strand, within PFR28_00807 at 875.035 kb on + strand, within PFR28_00807 at 875.035 kb on + strand, within PFR28_00807 at 875.036 kb on - strand, within PFR28_00807 at 875.036 kb on - strand, within PFR28_00807 at 875.426 kb on - strand at 875.426 kb on - strand at 875.444 kb on - strand at 875.444 kb on - strand at 875.483 kb on + strand at 875.638 kb on + strand, within PFR28_00808 at 875.638 kb on + strand, within PFR28_00808 at 875.638 kb on + strand, within PFR28_00808 at 875.638 kb on + strand, within PFR28_00808 at 875.638 kb on + strand, within PFR28_00808 at 875.639 kb on - strand, within PFR28_00808 at 875.639 kb on - strand, within PFR28_00808 at 875.639 kb on - strand, within PFR28_00808 at 875.639 kb on - strand, within PFR28_00808 at 875.639 kb on - strand, within PFR28_00808 at 875.639 kb on - strand, within PFR28_00808 at 875.639 kb on - strand, within PFR28_00808 at 875.663 kb on + strand, within PFR28_00808 at 875.675 kb on + strand, within PFR28_00808 at 875.675 kb on + strand, within PFR28_00808 at 875.675 kb on + strand, within PFR28_00808 at 875.675 kb on + strand, within PFR28_00808 at 875.676 kb on - strand, within PFR28_00808 at 876.057 kb on + strand, within PFR28_00808 at 876.210 kb on - strand, within PFR28_00808 at 876.338 kb on + strand, within PFR28_00808 at 876.527 kb on + strand, within PFR28_00808 at 876.528 kb on - strand, within PFR28_00808 at 876.528 kb on - strand, within PFR28_00808 at 876.528 kb on - strand, within PFR28_00808 at 876.536 kb on + strand, within PFR28_00808 at 876.536 kb on + strand, within PFR28_00808 at 876.536 kb on + strand, within PFR28_00808 at 876.671 kb on + strand at 876.671 kb on + strand at 876.671 kb on + strand at 876.672 kb on - strand at 876.672 kb on - strand at 876.693 kb on + strand at 876.693 kb on + strand at 876.694 kb on - strand at 876.694 kb on - strand at 876.714 kb on - strand at 876.722 kb on + strand at 876.750 kb on + strand at 876.750 kb on + strand at 876.750 kb on + strand at 876.750 kb on + strand at 876.750 kb on + strand at 876.750 kb on + strand at 876.751 kb on - strand at 876.751 kb on - strand at 876.751 kb on - strand at 876.751 kb on - strand at 876.751 kb on - strand at 876.752 kb on + strand at 876.752 kb on + strand at 876.753 kb on - strand at 876.753 kb on - strand at 876.753 kb on - strand at 876.753 kb on - strand at 876.958 kb on + strand at 876.959 kb on - strand at 876.960 kb on + strand at 876.960 kb on + strand at 876.960 kb on + strand at 876.960 kb on + strand at 876.960 kb on + strand at 876.960 kb on + strand at 876.960 kb on + strand at 876.960 kb on + strand at 876.960 kb on + strand at 876.960 kb on + strand at 876.961 kb on - strand at 876.961 kb on - strand at 876.961 kb on - strand at 876.961 kb on - strand at 876.961 kb on - strand at 876.961 kb on - strand at 876.961 kb on - strand at 876.961 kb on - strand at 876.961 kb on - strand at 876.961 kb on - strand at 876.961 kb on - strand at 876.961 kb on - strand at 876.962 kb on + strand at 876.962 kb on + strand at 876.962 kb on + strand at 876.962 kb on + strand at 876.962 kb on + strand at 876.962 kb on + strand at 876.962 kb on + strand at 876.962 kb on + strand at 876.962 kb on + strand at 876.962 kb on + strand at 876.962 kb on + strand at 876.963 kb on - strand at 876.963 kb on - strand at 876.963 kb on - strand at 876.963 kb on - strand at 876.963 kb on - strand at 876.963 kb on - strand at 876.963 kb on - strand at 876.963 kb on - strand at 876.963 kb on - strand at 876.963 kb on - strand at 876.963 kb on - strand at 876.963 kb on - strand at 876.969 kb on + strand at 876.969 kb on + strand at 876.969 kb on + strand at 876.970 kb on - strand at 876.970 kb on - strand at 876.970 kb on - strand at 877.434 kb on + strand, within PFR28_00809 at 877.434 kb on + strand, within PFR28_00809 at 877.434 kb on + strand, within PFR28_00809 at 877.434 kb on + strand, within PFR28_00809 at 877.434 kb on + strand, within PFR28_00809 at 877.434 kb on + strand, within PFR28_00809 at 877.435 kb on - strand, within PFR28_00809 at 877.435 kb on - strand, within PFR28_00809 at 877.435 kb on - strand, within PFR28_00809 at 877.435 kb on - strand, within PFR28_00809 at 877.435 kb on - strand, within PFR28_00809 at 877.435 kb on - strand, within PFR28_00809 at 877.435 kb on - strand, within PFR28_00809 at 877.435 kb on - strand, within PFR28_00809 at 877.435 kb on - strand, within PFR28_00809 at 877.435 kb on - strand, within PFR28_00809 at 877.435 kb on - strand, within PFR28_00809 at 877.435 kb on - strand, within PFR28_00809 at 877.435 kb on - strand, within PFR28_00809 at 877.469 kb on + strand, within PFR28_00809 at 877.470 kb on - strand, within PFR28_00809 at 877.470 kb on - strand, within PFR28_00809 at 877.478 kb on + strand, within PFR28_00809 at 877.478 kb on + strand, within PFR28_00809 at 877.479 kb on - strand, within PFR28_00809 at 877.572 kb on - strand, within PFR28_00809 at 877.615 kb on + strand, within PFR28_00809 at 877.616 kb on - strand, within PFR28_00809 at 877.676 kb on + strand, within PFR28_00809 at 877.676 kb on + strand, within PFR28_00809 at 877.676 kb on + strand, within PFR28_00809 at 877.676 kb on + strand, within PFR28_00809 at 877.677 kb on - strand, within PFR28_00809 at 877.677 kb on - strand, within PFR28_00809 at 877.677 kb on - strand, within PFR28_00809 at 877.677 kb on - strand, within PFR28_00809
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C) 10 mM remove 874,663 - PFR28_00807 0.31 -0.7 874,663 - PFR28_00807 0.31 -1.1 874,730 - PFR28_00807 0.37 -0.5 874,730 - PFR28_00807 0.37 +1.8 875,035 + PFR28_00807 0.64 -0.8 875,035 + PFR28_00807 0.64 +0.4 875,035 + PFR28_00807 0.64 -1.0 875,035 + PFR28_00807 0.64 -0.3 875,035 + PFR28_00807 0.64 -0.4 875,035 + PFR28_00807 0.64 -0.5 875,036 - PFR28_00807 0.65 -1.6 875,036 - PFR28_00807 0.65 -0.6 875,426 - +0.5 875,426 - -0.5 875,444 - -1.0 875,444 - -0.0 875,483 + -0.2 875,638 + PFR28_00808 0.15 +0.0 875,638 + PFR28_00808 0.15 -1.0 875,638 + PFR28_00808 0.15 -1.2 875,638 + PFR28_00808 0.15 -0.3 875,638 + PFR28_00808 0.15 -0.8 875,639 - PFR28_00808 0.15 +0.2 875,639 - PFR28_00808 0.15 -0.2 875,639 - PFR28_00808 0.15 -1.1 875,639 - PFR28_00808 0.15 -1.3 875,639 - PFR28_00808 0.15 +0.3 875,639 - PFR28_00808 0.15 -0.4 875,639 - PFR28_00808 0.15 -0.8 875,663 + PFR28_00808 0.17 -0.4 875,675 + PFR28_00808 0.18 -0.2 875,675 + PFR28_00808 0.18 -0.2 875,675 + PFR28_00808 0.18 -0.6 875,675 + PFR28_00808 0.18 -0.9 875,676 - PFR28_00808 0.18 -1.0 876,057 + PFR28_00808 0.47 -0.9 876,210 - PFR28_00808 0.59 -0.6 876,338 + PFR28_00808 0.68 -1.1 876,527 + PFR28_00808 0.83 -1.7 876,528 - PFR28_00808 0.83 -0.9 876,528 - PFR28_00808 0.83 -0.9 876,528 - PFR28_00808 0.83 -0.1 876,536 + PFR28_00808 0.83 -0.6 876,536 + PFR28_00808 0.83 -1.6 876,536 + PFR28_00808 0.83 -2.7 876,671 + -0.4 876,671 + -3.0 876,671 + -0.9 876,672 - -0.4 876,672 - -0.9 876,693 + -0.5 876,693 + +0.4 876,694 - +0.7 876,694 - -0.8 876,714 - -1.2 876,722 + +0.2 876,750 + -0.4 876,750 + +0.2 876,750 + +0.3 876,750 + +0.4 876,750 + -0.2 876,750 + -2.0 876,751 - -1.6 876,751 - -0.9 876,751 - -2.4 876,751 - -1.0 876,751 - -0.6 876,752 + -0.3 876,752 + +2.3 876,753 - -1.6 876,753 - -0.2 876,753 - -0.3 876,753 - -0.4 876,958 + -1.1 876,959 - +0.6 876,960 + -1.0 876,960 + -0.6 876,960 + -0.8 876,960 + -0.1 876,960 + -2.4 876,960 + +0.2 876,960 + -0.3 876,960 + -2.0 876,960 + -0.8 876,960 + -1.0 876,961 - -1.5 876,961 - -0.8 876,961 - -0.1 876,961 - -0.8 876,961 - -1.2 876,961 - -0.7 876,961 - +0.2 876,961 - -0.5 876,961 - -0.8 876,961 - -2.3 876,961 - -1.6 876,961 - -0.3 876,962 + -0.3 876,962 + -0.3 876,962 + -1.4 876,962 + -0.9 876,962 + -0.9 876,962 + -1.6 876,962 + -1.6 876,962 + -0.4 876,962 + -1.1 876,962 + -1.0 876,962 + -0.6 876,963 - -2.5 876,963 - +0.4 876,963 - -1.1 876,963 - -0.8 876,963 - -1.5 876,963 - -1.0 876,963 - -1.7 876,963 - -0.6 876,963 - -0.8 876,963 - -0.6 876,963 - -0.2 876,963 - -1.8 876,969 + -1.8 876,969 + -0.7 876,969 + -0.2 876,970 - -1.2 876,970 - -0.7 876,970 - -0.3 877,434 + PFR28_00809 0.32 -1.2 877,434 + PFR28_00809 0.32 -1.0 877,434 + PFR28_00809 0.32 -2.2 877,434 + PFR28_00809 0.32 -0.5 877,434 + PFR28_00809 0.32 -2.4 877,434 + PFR28_00809 0.32 -0.9 877,435 - PFR28_00809 0.32 -0.1 877,435 - PFR28_00809 0.32 -0.7 877,435 - PFR28_00809 0.32 -1.0 877,435 - PFR28_00809 0.32 -0.4 877,435 - PFR28_00809 0.32 -1.2 877,435 - PFR28_00809 0.32 -0.0 877,435 - PFR28_00809 0.32 -0.8 877,435 - PFR28_00809 0.32 -1.3 877,435 - PFR28_00809 0.32 -0.1 877,435 - PFR28_00809 0.32 -1.0 877,435 - PFR28_00809 0.32 -0.4 877,435 - PFR28_00809 0.32 -1.1 877,435 - PFR28_00809 0.32 -0.7 877,469 + PFR28_00809 0.34 -1.1 877,470 - PFR28_00809 0.34 -1.1 877,470 - PFR28_00809 0.34 -0.8 877,478 + PFR28_00809 0.34 -0.8 877,478 + PFR28_00809 0.34 -0.6 877,479 - PFR28_00809 0.35 -0.5 877,572 - PFR28_00809 0.39 -0.9 877,615 + PFR28_00809 0.41 -0.8 877,616 - PFR28_00809 0.41 -1.1 877,676 + PFR28_00809 0.44 -1.3 877,676 + PFR28_00809 0.44 -1.3 877,676 + PFR28_00809 0.44 -0.4 877,676 + PFR28_00809 0.44 -3.1 877,677 - PFR28_00809 0.44 -0.7 877,677 - PFR28_00809 0.44 -2.6 877,677 - PFR28_00809 0.44 -1.8 877,677 - PFR28_00809 0.44 -1.4
Or see this region's nucleotide sequence