Strain Fitness in Pseudomonas sp. RS175 around PFR28_00573

Experiment: D-Glucose (C) 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_00572 and PFR28_00573 are separated by 187 nucleotidesPFR28_00573 and PFR28_00574 overlap by 14 nucleotidesPFR28_00574 and PFR28_00575 are separated by 17 nucleotides PFR28_00572: PFR28_00572 - HTH-type transcriptional regulator HexR, at 613,627 to 614,496 _00572 PFR28_00573: PFR28_00573 - Glucose-6-phosphate 1-dehydrogenase, at 614,684 to 616,153 _00573 PFR28_00574: PFR28_00574 - 6-phosphogluconolactonase, at 616,140 to 616,853 _00574 PFR28_00575: PFR28_00575 - 2-dehydro-3-deoxy-phosphogluconate aldolase, at 616,871 to 617,536 _00575 Position (kb) 614 615 616 617Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 613.784 kb on + strand, within PFR28_00572at 613.784 kb on + strand, within PFR28_00572at 613.784 kb on + strand, within PFR28_00572at 613.784 kb on + strand, within PFR28_00572at 613.784 kb on + strand, within PFR28_00572at 613.784 kb on + strand, within PFR28_00572at 613.784 kb on + strand, within PFR28_00572at 613.784 kb on + strand, within PFR28_00572at 613.784 kb on + strand, within PFR28_00572at 613.784 kb on + strand, within PFR28_00572at 613.784 kb on + strand, within PFR28_00572at 613.784 kb on + strand, within PFR28_00572at 613.785 kb on - strand, within PFR28_00572at 613.785 kb on - strand, within PFR28_00572at 613.785 kb on - strand, within PFR28_00572at 613.785 kb on - strand, within PFR28_00572at 613.785 kb on - strand, within PFR28_00572at 613.785 kb on - strand, within PFR28_00572at 613.785 kb on - strand, within PFR28_00572at 613.785 kb on - strand, within PFR28_00572at 613.785 kb on - strand, within PFR28_00572at 613.785 kb on - strand, within PFR28_00572at 613.785 kb on - strand, within PFR28_00572at 613.785 kb on - strand, within PFR28_00572at 613.785 kb on - strand, within PFR28_00572at 613.970 kb on - strand, within PFR28_00572at 614.204 kb on + strand, within PFR28_00572at 614.204 kb on + strand, within PFR28_00572at 614.204 kb on + strand, within PFR28_00572at 614.204 kb on + strand, within PFR28_00572at 614.205 kb on - strand, within PFR28_00572at 614.205 kb on - strand, within PFR28_00572at 614.246 kb on + strand, within PFR28_00572at 614.246 kb on + strand, within PFR28_00572at 614.246 kb on + strand, within PFR28_00572at 614.246 kb on + strand, within PFR28_00572at 614.246 kb on + strand, within PFR28_00572at 614.246 kb on + strand, within PFR28_00572at 614.246 kb on + strand, within PFR28_00572at 614.247 kb on - strand, within PFR28_00572at 614.247 kb on - strand, within PFR28_00572at 614.476 kb on + strandat 614.476 kb on + strandat 614.477 kb on - strandat 614.477 kb on - strandat 614.477 kb on - strandat 614.497 kb on - strandat 614.497 kb on - strandat 614.507 kb on + strandat 614.507 kb on + strandat 614.507 kb on + strandat 614.507 kb on + strandat 614.546 kb on + strandat 614.546 kb on + strandat 614.546 kb on + strandat 614.547 kb on - strandat 614.551 kb on + strandat 614.552 kb on - strandat 614.552 kb on - strandat 614.552 kb on - strandat 614.588 kb on - strandat 614.609 kb on + strandat 614.612 kb on + strandat 614.612 kb on + strandat 614.612 kb on + strandat 614.612 kb on + strandat 614.612 kb on + strandat 614.612 kb on + strandat 614.613 kb on - strandat 614.613 kb on - strandat 614.613 kb on - strandat 614.613 kb on - strandat 614.613 kb on - strandat 614.613 kb on - strandat 614.613 kb on - strandat 614.613 kb on - strandat 614.615 kb on + strandat 614.668 kb on + strandat 614.668 kb on + strandat 614.668 kb on + strandat 614.668 kb on + strandat 614.978 kb on + strand, within PFR28_00573at 614.978 kb on + strand, within PFR28_00573at 614.978 kb on + strand, within PFR28_00573at 614.978 kb on + strand, within PFR28_00573at 615.050 kb on + strand, within PFR28_00573at 615.050 kb on + strand, within PFR28_00573at 615.050 kb on + strand, within PFR28_00573at 615.050 kb on + strand, within PFR28_00573at 615.153 kb on + strand, within PFR28_00573at 615.153 kb on + strand, within PFR28_00573at 615.194 kb on + strand, within PFR28_00573at 615.194 kb on + strand, within PFR28_00573at 615.194 kb on + strand, within PFR28_00573at 615.194 kb on + strand, within PFR28_00573at 615.194 kb on + strand, within PFR28_00573at 615.228 kb on + strand, within PFR28_00573at 615.290 kb on + strand, within PFR28_00573at 615.290 kb on + strand, within PFR28_00573at 615.290 kb on + strand, within PFR28_00573at 615.290 kb on + strand, within PFR28_00573at 615.290 kb on + strand, within PFR28_00573at 615.290 kb on + strand, within PFR28_00573at 615.290 kb on + strand, within PFR28_00573at 615.290 kb on + strand, within PFR28_00573at 615.290 kb on + strand, within PFR28_00573at 615.290 kb on + strand, within PFR28_00573at 615.290 kb on + strand, within PFR28_00573at 615.290 kb on + strand, within PFR28_00573at 615.290 kb on + strand, within PFR28_00573at 615.290 kb on + strand, within PFR28_00573at 615.405 kb on + strand, within PFR28_00573at 615.405 kb on + strand, within PFR28_00573at 615.405 kb on + strand, within PFR28_00573at 615.539 kb on + strand, within PFR28_00573at 615.539 kb on + strand, within PFR28_00573at 615.578 kb on + strand, within PFR28_00573at 615.677 kb on + strand, within PFR28_00573at 615.749 kb on + strand, within PFR28_00573at 615.749 kb on + strand, within PFR28_00573at 615.749 kb on + strand, within PFR28_00573at 615.749 kb on + strand, within PFR28_00573at 615.749 kb on + strand, within PFR28_00573at 615.938 kb on + strand, within PFR28_00573at 615.939 kb on - strand, within PFR28_00573at 616.073 kb on + strandat 616.473 kb on + strand, within PFR28_00574at 616.474 kb on - strand, within PFR28_00574at 616.729 kb on + strand, within PFR28_00574at 616.826 kb on + strandat 616.826 kb on + strandat 616.826 kb on + strandat 616.826 kb on + strandat 616.826 kb on + strandat 616.826 kb on + strandat 616.826 kb on + strandat 616.826 kb on + strandat 616.826 kb on + strandat 616.826 kb on + strandat 616.826 kb on + strandat 616.831 kb on + strandat 616.839 kb on + strandat 616.839 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C) 10 mM
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613,784 + PFR28_00572 0.18 -1.3
613,784 + PFR28_00572 0.18 -0.5
613,784 + PFR28_00572 0.18 +0.2
613,784 + PFR28_00572 0.18 -0.7
613,784 + PFR28_00572 0.18 -0.8
613,784 + PFR28_00572 0.18 -0.6
613,784 + PFR28_00572 0.18 -2.9
613,784 + PFR28_00572 0.18 +0.1
613,784 + PFR28_00572 0.18 -0.3
613,784 + PFR28_00572 0.18 -1.2
613,784 + PFR28_00572 0.18 -1.2
613,784 + PFR28_00572 0.18 +0.0
613,785 - PFR28_00572 0.18 -0.1
613,785 - PFR28_00572 0.18 +0.2
613,785 - PFR28_00572 0.18 +0.9
613,785 - PFR28_00572 0.18 +0.8
613,785 - PFR28_00572 0.18 -0.3
613,785 - PFR28_00572 0.18 -0.1
613,785 - PFR28_00572 0.18 +0.7
613,785 - PFR28_00572 0.18 -1.1
613,785 - PFR28_00572 0.18 -0.3
613,785 - PFR28_00572 0.18 -1.0
613,785 - PFR28_00572 0.18 -0.1
613,785 - PFR28_00572 0.18 +0.0
613,785 - PFR28_00572 0.18 -0.6
613,970 - PFR28_00572 0.39 -1.3
614,204 + PFR28_00572 0.66 -1.6
614,204 + PFR28_00572 0.66 -0.1
614,204 + PFR28_00572 0.66 +0.4
614,204 + PFR28_00572 0.66 -0.4
614,205 - PFR28_00572 0.66 +0.5
614,205 - PFR28_00572 0.66 -0.7
614,246 + PFR28_00572 0.71 +0.3
614,246 + PFR28_00572 0.71 -0.3
614,246 + PFR28_00572 0.71 -0.7
614,246 + PFR28_00572 0.71 -0.2
614,246 + PFR28_00572 0.71 +1.4
614,246 + PFR28_00572 0.71 -0.2
614,246 + PFR28_00572 0.71 -0.2
614,247 - PFR28_00572 0.71 +0.3
614,247 - PFR28_00572 0.71 -0.2
614,476 + +0.1
614,476 + -0.4
614,477 - -0.3
614,477 - -0.1
614,477 - -0.0
614,497 - -0.7
614,497 - -0.8
614,507 + +1.0
614,507 + -2.1
614,507 + +0.2
614,507 + -0.1
614,546 + +0.2
614,546 + -0.2
614,546 + +0.6
614,547 - -0.8
614,551 + -0.3
614,552 - -0.9
614,552 - -0.2
614,552 - -2.3
614,588 - -1.5
614,609 + -0.3
614,612 + -0.1
614,612 + +0.2
614,612 + -0.6
614,612 + +1.2
614,612 + -0.7
614,612 + +0.4
614,613 - -3.2
614,613 - -1.1
614,613 - -2.7
614,613 - -2.6
614,613 - -3.5
614,613 - -3.0
614,613 - -1.9
614,613 - -0.8
614,615 + -0.6
614,668 + -0.2
614,668 + -0.6
614,668 + -0.2
614,668 + -1.2
614,978 + PFR28_00573 0.20 -3.9
614,978 + PFR28_00573 0.20 -4.4
614,978 + PFR28_00573 0.20 -2.1
614,978 + PFR28_00573 0.20 -1.1
615,050 + PFR28_00573 0.25 -3.3
615,050 + PFR28_00573 0.25 -4.2
615,050 + PFR28_00573 0.25 -3.4
615,050 + PFR28_00573 0.25 -2.4
615,153 + PFR28_00573 0.32 -4.3
615,153 + PFR28_00573 0.32 -3.5
615,194 + PFR28_00573 0.35 -3.2
615,194 + PFR28_00573 0.35 -2.6
615,194 + PFR28_00573 0.35 -2.8
615,194 + PFR28_00573 0.35 -4.3
615,194 + PFR28_00573 0.35 -4.0
615,228 + PFR28_00573 0.37 -4.4
615,290 + PFR28_00573 0.41 -0.6
615,290 + PFR28_00573 0.41 -3.3
615,290 + PFR28_00573 0.41 -3.0
615,290 + PFR28_00573 0.41 -3.0
615,290 + PFR28_00573 0.41 -1.8
615,290 + PFR28_00573 0.41 -1.1
615,290 + PFR28_00573 0.41 -4.3
615,290 + PFR28_00573 0.41 -3.0
615,290 + PFR28_00573 0.41 -4.0
615,290 + PFR28_00573 0.41 -1.9
615,290 + PFR28_00573 0.41 -1.5
615,290 + PFR28_00573 0.41 -2.2
615,290 + PFR28_00573 0.41 -3.3
615,290 + PFR28_00573 0.41 -2.3
615,405 + PFR28_00573 0.49 -2.9
615,405 + PFR28_00573 0.49 -2.8
615,405 + PFR28_00573 0.49 -2.9
615,539 + PFR28_00573 0.58 -3.0
615,539 + PFR28_00573 0.58 -3.9
615,578 + PFR28_00573 0.61 -3.0
615,677 + PFR28_00573 0.68 -2.7
615,749 + PFR28_00573 0.72 -3.0
615,749 + PFR28_00573 0.72 -1.6
615,749 + PFR28_00573 0.72 -2.7
615,749 + PFR28_00573 0.72 -3.0
615,749 + PFR28_00573 0.72 -4.0
615,938 + PFR28_00573 0.85 -2.5
615,939 - PFR28_00573 0.85 -0.3
616,073 + -1.6
616,473 + PFR28_00574 0.47 +0.2
616,474 - PFR28_00574 0.47 -2.1
616,729 + PFR28_00574 0.82 +1.2
616,826 + -1.3
616,826 + +1.2
616,826 + -2.1
616,826 + +0.2
616,826 + -1.0
616,826 + +0.2
616,826 + -1.3
616,826 + -1.8
616,826 + -1.0
616,826 + -1.6
616,826 + +1.2
616,831 + +1.2
616,839 + -1.9
616,839 + -0.6

Or see this region's nucleotide sequence