Strain Fitness in Pseudomonas sp. RS175 around PFR28_00562

Experiment: D-Glucose (C) 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_00561 and PFR28_00562 overlap by 4 nucleotidesPFR28_00562 and PFR28_00563 are separated by 172 nucleotidesPFR28_00563 and PFR28_00564 overlap by 11 nucleotides PFR28_00561: PFR28_00561 - Phosphogluconate dehydratase, at 599,669 to 601,495 _00561 PFR28_00562: PFR28_00562 - Glucokinase, at 601,492 to 602,451 _00562 PFR28_00563: PFR28_00563 - Transcriptional regulatory protein OmpR, at 602,624 to 603,355 _00563 PFR28_00564: PFR28_00564 - Adaptive-response sensory-kinase SasA, at 603,345 to 604,814 _00564 Position (kb) 601 602 603Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 600.677 kb on + strand, within PFR28_00561at 600.928 kb on - strand, within PFR28_00561at 601.256 kb on + strand, within PFR28_00561at 601.257 kb on - strand, within PFR28_00561at 601.489 kb on + strandat 601.489 kb on + strandat 601.490 kb on - strandat 601.490 kb on - strandat 601.490 kb on - strandat 601.490 kb on - strandat 601.490 kb on - strandat 601.570 kb on - strandat 601.594 kb on + strand, within PFR28_00562at 601.594 kb on + strand, within PFR28_00562at 601.594 kb on + strand, within PFR28_00562at 601.624 kb on + strand, within PFR28_00562at 601.625 kb on - strand, within PFR28_00562at 601.625 kb on - strand, within PFR28_00562at 601.917 kb on + strand, within PFR28_00562at 602.026 kb on + strand, within PFR28_00562at 602.026 kb on + strand, within PFR28_00562at 602.026 kb on + strand, within PFR28_00562at 602.026 kb on + strand, within PFR28_00562at 602.026 kb on + strand, within PFR28_00562at 602.026 kb on + strand, within PFR28_00562at 602.026 kb on + strand, within PFR28_00562at 602.026 kb on + strand, within PFR28_00562at 602.026 kb on + strand, within PFR28_00562at 602.027 kb on - strand, within PFR28_00562at 602.027 kb on - strand, within PFR28_00562at 602.027 kb on - strand, within PFR28_00562at 602.027 kb on - strand, within PFR28_00562at 602.027 kb on - strand, within PFR28_00562at 602.027 kb on - strand, within PFR28_00562at 602.027 kb on - strand, within PFR28_00562at 602.027 kb on - strand, within PFR28_00562at 602.027 kb on - strand, within PFR28_00562at 602.027 kb on - strand, within PFR28_00562at 602.027 kb on - strand, within PFR28_00562at 602.266 kb on + strand, within PFR28_00562at 602.266 kb on + strand, within PFR28_00562at 602.266 kb on + strand, within PFR28_00562at 602.266 kb on + strand, within PFR28_00562at 602.266 kb on + strand, within PFR28_00562at 602.267 kb on - strand, within PFR28_00562at 602.267 kb on - strand, within PFR28_00562at 602.267 kb on - strand, within PFR28_00562at 602.359 kb on + strandat 602.359 kb on + strandat 602.360 kb on - strandat 602.466 kb on - strandat 602.501 kb on + strandat 602.501 kb on + strandat 602.501 kb on + strandat 602.501 kb on + strandat 602.568 kb on + strandat 602.568 kb on + strandat 602.568 kb on + strandat 602.569 kb on - strandat 602.569 kb on - strandat 602.569 kb on - strandat 602.569 kb on - strandat 602.588 kb on + strandat 602.588 kb on + strandat 602.588 kb on + strandat 602.588 kb on + strandat 602.588 kb on + strandat 602.589 kb on - strandat 602.589 kb on - strandat 602.589 kb on - strandat 602.589 kb on - strandat 602.693 kb on + strandat 602.693 kb on + strandat 602.693 kb on + strandat 602.693 kb on + strandat 602.693 kb on + strandat 602.694 kb on - strandat 602.694 kb on - strandat 602.694 kb on - strandat 602.694 kb on - strandat 602.694 kb on - strandat 602.937 kb on - strand, within PFR28_00563at 603.061 kb on + strand, within PFR28_00563at 603.061 kb on + strand, within PFR28_00563at 603.061 kb on + strand, within PFR28_00563at 603.296 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C) 10 mM
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600,677 + PFR28_00561 0.55 +0.2
600,928 - PFR28_00561 0.69 -0.3
601,256 + PFR28_00561 0.87 -0.8
601,257 - PFR28_00561 0.87 -2.1
601,489 + -1.3
601,489 + -1.8
601,490 - -2.7
601,490 - -3.2
601,490 - -2.6
601,490 - -2.0
601,490 - -4.4
601,570 - -1.3
601,594 + PFR28_00562 0.11 -2.5
601,594 + PFR28_00562 0.11 -2.1
601,594 + PFR28_00562 0.11 -1.1
601,624 + PFR28_00562 0.14 -1.1
601,625 - PFR28_00562 0.14 -1.8
601,625 - PFR28_00562 0.14 -1.5
601,917 + PFR28_00562 0.44 -2.5
602,026 + PFR28_00562 0.56 +0.0
602,026 + PFR28_00562 0.56 -0.7
602,026 + PFR28_00562 0.56 -0.7
602,026 + PFR28_00562 0.56 -0.7
602,026 + PFR28_00562 0.56 -0.5
602,026 + PFR28_00562 0.56 -1.7
602,026 + PFR28_00562 0.56 -2.2
602,026 + PFR28_00562 0.56 -1.8
602,026 + PFR28_00562 0.56 -1.2
602,027 - PFR28_00562 0.56 -0.3
602,027 - PFR28_00562 0.56 -0.8
602,027 - PFR28_00562 0.56 -0.8
602,027 - PFR28_00562 0.56 -2.2
602,027 - PFR28_00562 0.56 -1.1
602,027 - PFR28_00562 0.56 -1.1
602,027 - PFR28_00562 0.56 -0.8
602,027 - PFR28_00562 0.56 -1.4
602,027 - PFR28_00562 0.56 -1.9
602,027 - PFR28_00562 0.56 -1.5
602,027 - PFR28_00562 0.56 -1.3
602,266 + PFR28_00562 0.81 +0.2
602,266 + PFR28_00562 0.81 -2.3
602,266 + PFR28_00562 0.81 -1.4
602,266 + PFR28_00562 0.81 -0.2
602,266 + PFR28_00562 0.81 -1.8
602,267 - PFR28_00562 0.81 -1.2
602,267 - PFR28_00562 0.81 -0.6
602,267 - PFR28_00562 0.81 -1.0
602,359 + -1.3
602,359 + -1.6
602,360 - -1.3
602,466 - -0.3
602,501 + -0.6
602,501 + -0.0
602,501 + -0.3
602,501 + +0.4
602,568 + -0.1
602,568 + -1.0
602,568 + +0.2
602,569 - +0.4
602,569 - -0.5
602,569 - -0.2
602,569 - +1.2
602,588 + -0.5
602,588 + -0.6
602,588 + +0.2
602,588 + +0.2
602,588 + -0.6
602,589 - -0.1
602,589 - -1.6
602,589 - -0.1
602,589 - -0.0
602,693 + -0.8
602,693 + +0.4
602,693 + -0.4
602,693 + +0.3
602,693 + +0.4
602,694 - -0.4
602,694 - -1.2
602,694 - -1.4
602,694 - -0.1
602,694 - -0.5
602,937 - PFR28_00563 0.43 -0.5
603,061 + PFR28_00563 0.60 +0.9
603,061 + PFR28_00563 0.60 -0.9
603,061 + PFR28_00563 0.60 -0.6
603,296 - -0.1

Or see this region's nucleotide sequence