Strain Fitness in Pseudomonas sp. RS175 around PFR28_00561

Experiment: D-Glucose (C) 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_00560 and PFR28_00561 are separated by 219 nucleotidesPFR28_00561 and PFR28_00562 overlap by 4 nucleotides PFR28_00560: PFR28_00560 - Glyceraldehyde-3-phosphate dehydrogenase 1, at 598,448 to 599,449 _00560 PFR28_00561: PFR28_00561 - Phosphogluconate dehydratase, at 599,669 to 601,495 _00561 PFR28_00562: PFR28_00562 - Glucokinase, at 601,492 to 602,451 _00562 Position (kb) 599 600 601 602Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 598.718 kb on + strand, within PFR28_00560at 598.719 kb on - strand, within PFR28_00560at 598.858 kb on - strand, within PFR28_00560at 598.872 kb on + strand, within PFR28_00560at 598.873 kb on - strand, within PFR28_00560at 598.902 kb on + strand, within PFR28_00560at 598.902 kb on + strand, within PFR28_00560at 598.902 kb on + strand, within PFR28_00560at 598.902 kb on + strand, within PFR28_00560at 598.903 kb on - strand, within PFR28_00560at 598.903 kb on - strand, within PFR28_00560at 598.903 kb on - strand, within PFR28_00560at 598.903 kb on - strand, within PFR28_00560at 598.903 kb on - strand, within PFR28_00560at 598.903 kb on - strand, within PFR28_00560at 598.903 kb on - strand, within PFR28_00560at 599.046 kb on + strand, within PFR28_00560at 599.046 kb on + strand, within PFR28_00560at 599.046 kb on + strand, within PFR28_00560at 599.046 kb on + strand, within PFR28_00560at 599.046 kb on + strand, within PFR28_00560at 599.046 kb on + strand, within PFR28_00560at 599.046 kb on + strand, within PFR28_00560at 599.047 kb on - strand, within PFR28_00560at 599.047 kb on - strand, within PFR28_00560at 599.047 kb on - strand, within PFR28_00560at 599.047 kb on - strand, within PFR28_00560at 599.047 kb on - strand, within PFR28_00560at 599.047 kb on - strand, within PFR28_00560at 599.114 kb on - strand, within PFR28_00560at 599.114 kb on - strand, within PFR28_00560at 599.373 kb on + strandat 599.383 kb on + strandat 599.383 kb on + strandat 599.384 kb on - strandat 599.384 kb on - strandat 599.385 kb on + strandat 599.385 kb on + strandat 599.385 kb on + strandat 599.385 kb on + strandat 599.386 kb on - strandat 599.386 kb on - strandat 599.386 kb on - strandat 599.386 kb on - strandat 599.450 kb on + strandat 599.482 kb on + strandat 599.483 kb on - strandat 599.540 kb on + strandat 599.541 kb on - strandat 599.544 kb on + strandat 599.544 kb on + strandat 599.626 kb on + strandat 599.626 kb on + strandat 599.626 kb on + strandat 599.627 kb on - strandat 599.627 kb on - strandat 599.627 kb on - strandat 599.664 kb on + strandat 599.664 kb on + strandat 599.664 kb on + strandat 599.664 kb on + strandat 599.664 kb on + strandat 599.735 kb on + strandat 599.888 kb on + strand, within PFR28_00561at 599.889 kb on - strand, within PFR28_00561at 599.889 kb on - strand, within PFR28_00561at 599.889 kb on - strand, within PFR28_00561at 599.889 kb on - strand, within PFR28_00561at 599.889 kb on - strand, within PFR28_00561at 599.990 kb on - strand, within PFR28_00561at 600.258 kb on - strand, within PFR28_00561at 600.311 kb on + strand, within PFR28_00561at 600.338 kb on + strand, within PFR28_00561at 600.677 kb on + strand, within PFR28_00561at 600.928 kb on - strand, within PFR28_00561at 601.256 kb on + strand, within PFR28_00561at 601.257 kb on - strand, within PFR28_00561at 601.489 kb on + strandat 601.489 kb on + strandat 601.490 kb on - strandat 601.490 kb on - strandat 601.490 kb on - strandat 601.490 kb on - strandat 601.490 kb on - strandat 601.570 kb on - strandat 601.594 kb on + strand, within PFR28_00562at 601.594 kb on + strand, within PFR28_00562at 601.594 kb on + strand, within PFR28_00562at 601.624 kb on + strand, within PFR28_00562at 601.625 kb on - strand, within PFR28_00562at 601.625 kb on - strand, within PFR28_00562at 601.917 kb on + strand, within PFR28_00562at 602.026 kb on + strand, within PFR28_00562at 602.026 kb on + strand, within PFR28_00562at 602.026 kb on + strand, within PFR28_00562at 602.026 kb on + strand, within PFR28_00562at 602.026 kb on + strand, within PFR28_00562at 602.026 kb on + strand, within PFR28_00562at 602.026 kb on + strand, within PFR28_00562at 602.026 kb on + strand, within PFR28_00562at 602.026 kb on + strand, within PFR28_00562at 602.027 kb on - strand, within PFR28_00562at 602.027 kb on - strand, within PFR28_00562at 602.027 kb on - strand, within PFR28_00562at 602.027 kb on - strand, within PFR28_00562at 602.027 kb on - strand, within PFR28_00562at 602.027 kb on - strand, within PFR28_00562at 602.027 kb on - strand, within PFR28_00562at 602.027 kb on - strand, within PFR28_00562at 602.027 kb on - strand, within PFR28_00562at 602.027 kb on - strand, within PFR28_00562at 602.027 kb on - strand, within PFR28_00562at 602.266 kb on + strand, within PFR28_00562at 602.266 kb on + strand, within PFR28_00562at 602.266 kb on + strand, within PFR28_00562at 602.266 kb on + strand, within PFR28_00562at 602.266 kb on + strand, within PFR28_00562at 602.267 kb on - strand, within PFR28_00562at 602.267 kb on - strand, within PFR28_00562at 602.267 kb on - strand, within PFR28_00562at 602.359 kb on + strandat 602.359 kb on + strandat 602.360 kb on - strandat 602.466 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C) 10 mM
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598,718 + PFR28_00560 0.27 -2.8
598,719 - PFR28_00560 0.27 -4.0
598,858 - PFR28_00560 0.41 -4.1
598,872 + PFR28_00560 0.42 -2.6
598,873 - PFR28_00560 0.42 -4.3
598,902 + PFR28_00560 0.45 -1.3
598,902 + PFR28_00560 0.45 -2.6
598,902 + PFR28_00560 0.45 -1.6
598,902 + PFR28_00560 0.45 -4.5
598,903 - PFR28_00560 0.45 -1.4
598,903 - PFR28_00560 0.45 -2.1
598,903 - PFR28_00560 0.45 -4.3
598,903 - PFR28_00560 0.45 -2.9
598,903 - PFR28_00560 0.45 -2.1
598,903 - PFR28_00560 0.45 -1.7
598,903 - PFR28_00560 0.45 -2.3
599,046 + PFR28_00560 0.60 -4.4
599,046 + PFR28_00560 0.60 -2.3
599,046 + PFR28_00560 0.60 -0.3
599,046 + PFR28_00560 0.60 -4.2
599,046 + PFR28_00560 0.60 -1.6
599,046 + PFR28_00560 0.60 -1.8
599,046 + PFR28_00560 0.60 -3.4
599,047 - PFR28_00560 0.60 -3.0
599,047 - PFR28_00560 0.60 -2.4
599,047 - PFR28_00560 0.60 -1.3
599,047 - PFR28_00560 0.60 -3.2
599,047 - PFR28_00560 0.60 -2.3
599,047 - PFR28_00560 0.60 -4.4
599,114 - PFR28_00560 0.66 -4.0
599,114 - PFR28_00560 0.66 -1.4
599,373 + -1.5
599,383 + -2.4
599,383 + -4.5
599,384 - -0.8
599,384 - -2.7
599,385 + -3.6
599,385 + -1.1
599,385 + -3.2
599,385 + -2.7
599,386 - -2.6
599,386 - -2.2
599,386 - -3.5
599,386 - -2.2
599,450 + -2.1
599,482 + -2.4
599,483 - -1.2
599,540 + -2.4
599,541 - -0.8
599,544 + -1.0
599,544 + -1.8
599,626 + -2.7
599,626 + -2.2
599,626 + -0.4
599,627 - -2.5
599,627 - -1.1
599,627 - -1.6
599,664 + -0.8
599,664 + +0.2
599,664 + -0.8
599,664 + -1.1
599,664 + +1.2
599,735 + +0.2
599,888 + PFR28_00561 0.12 +1.2
599,889 - PFR28_00561 0.12 +0.2
599,889 - PFR28_00561 0.12 -0.3
599,889 - PFR28_00561 0.12 -0.8
599,889 - PFR28_00561 0.12 +0.2
599,889 - PFR28_00561 0.12 +1.2
599,990 - PFR28_00561 0.18 -0.3
600,258 - PFR28_00561 0.32 -0.3
600,311 + PFR28_00561 0.35 -0.3
600,338 + PFR28_00561 0.37 +0.2
600,677 + PFR28_00561 0.55 +0.2
600,928 - PFR28_00561 0.69 -0.3
601,256 + PFR28_00561 0.87 -0.8
601,257 - PFR28_00561 0.87 -2.1
601,489 + -1.3
601,489 + -1.8
601,490 - -2.7
601,490 - -3.2
601,490 - -2.6
601,490 - -2.0
601,490 - -4.4
601,570 - -1.3
601,594 + PFR28_00562 0.11 -2.5
601,594 + PFR28_00562 0.11 -2.1
601,594 + PFR28_00562 0.11 -1.1
601,624 + PFR28_00562 0.14 -1.1
601,625 - PFR28_00562 0.14 -1.8
601,625 - PFR28_00562 0.14 -1.5
601,917 + PFR28_00562 0.44 -2.5
602,026 + PFR28_00562 0.56 +0.0
602,026 + PFR28_00562 0.56 -0.7
602,026 + PFR28_00562 0.56 -0.7
602,026 + PFR28_00562 0.56 -0.7
602,026 + PFR28_00562 0.56 -0.5
602,026 + PFR28_00562 0.56 -1.7
602,026 + PFR28_00562 0.56 -2.2
602,026 + PFR28_00562 0.56 -1.8
602,026 + PFR28_00562 0.56 -1.2
602,027 - PFR28_00562 0.56 -0.3
602,027 - PFR28_00562 0.56 -0.8
602,027 - PFR28_00562 0.56 -0.8
602,027 - PFR28_00562 0.56 -2.2
602,027 - PFR28_00562 0.56 -1.1
602,027 - PFR28_00562 0.56 -1.1
602,027 - PFR28_00562 0.56 -0.8
602,027 - PFR28_00562 0.56 -1.4
602,027 - PFR28_00562 0.56 -1.9
602,027 - PFR28_00562 0.56 -1.5
602,027 - PFR28_00562 0.56 -1.3
602,266 + PFR28_00562 0.81 +0.2
602,266 + PFR28_00562 0.81 -2.3
602,266 + PFR28_00562 0.81 -1.4
602,266 + PFR28_00562 0.81 -0.2
602,266 + PFR28_00562 0.81 -1.8
602,267 - PFR28_00562 0.81 -1.2
602,267 - PFR28_00562 0.81 -0.6
602,267 - PFR28_00562 0.81 -1.0
602,359 + -1.3
602,359 + -1.6
602,360 - -1.3
602,466 - -0.3

Or see this region's nucleotide sequence