Strain Fitness in Pseudomonas sp. RS175 around PFR28_00188

Experiment: D-Glucose (C) 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_00187 and PFR28_00188 are separated by 2 nucleotidesPFR28_00188 and PFR28_00189 are separated by 84 nucleotidesPFR28_00189 and PFR28_00190 are separated by 12 nucleotides PFR28_00187: PFR28_00187 - Histidinol dehydrogenase, at 209,042 to 210,379 _00187 PFR28_00188: PFR28_00188 - Histidinol-phosphate aminotransferase, at 210,382 to 211,434 _00188 PFR28_00189: PFR28_00189 - hypothetical protein, at 211,519 to 212,238 _00189 PFR28_00190: PFR28_00190 - Metal-pseudopaline receptor CntO, at 212,251 to 214,356 _00190 Position (kb) 210 211 212Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 209.384 kb on + strand, within PFR28_00187at 209.401 kb on + strand, within PFR28_00187at 209.401 kb on + strand, within PFR28_00187at 209.401 kb on + strand, within PFR28_00187at 209.402 kb on - strand, within PFR28_00187at 209.402 kb on - strand, within PFR28_00187at 209.402 kb on - strand, within PFR28_00187at 209.402 kb on - strand, within PFR28_00187at 209.447 kb on + strand, within PFR28_00187at 209.447 kb on + strand, within PFR28_00187at 209.448 kb on - strand, within PFR28_00187at 209.705 kb on + strand, within PFR28_00187at 209.705 kb on + strand, within PFR28_00187at 209.705 kb on + strand, within PFR28_00187at 209.705 kb on + strand, within PFR28_00187at 209.705 kb on + strand, within PFR28_00187at 209.706 kb on - strand, within PFR28_00187at 209.706 kb on - strand, within PFR28_00187at 209.706 kb on - strand, within PFR28_00187at 209.706 kb on - strand, within PFR28_00187at 209.706 kb on - strand, within PFR28_00187at 209.706 kb on - strand, within PFR28_00187at 209.706 kb on - strand, within PFR28_00187at 209.706 kb on - strand, within PFR28_00187at 209.706 kb on - strand, within PFR28_00187at 209.784 kb on + strand, within PFR28_00187at 209.784 kb on + strand, within PFR28_00187at 209.784 kb on + strand, within PFR28_00187at 209.784 kb on + strand, within PFR28_00187at 209.784 kb on + strand, within PFR28_00187at 209.784 kb on + strand, within PFR28_00187at 209.785 kb on - strand, within PFR28_00187at 209.785 kb on - strand, within PFR28_00187at 209.785 kb on - strand, within PFR28_00187at 209.785 kb on - strand, within PFR28_00187at 209.785 kb on - strand, within PFR28_00187at 209.922 kb on + strand, within PFR28_00187at 209.922 kb on + strand, within PFR28_00187at 209.922 kb on + strand, within PFR28_00187at 209.923 kb on - strand, within PFR28_00187at 209.923 kb on - strand, within PFR28_00187at 209.923 kb on - strand, within PFR28_00187at 209.956 kb on + strand, within PFR28_00187at 209.956 kb on + strand, within PFR28_00187at 209.956 kb on + strand, within PFR28_00187at 209.956 kb on + strand, within PFR28_00187at 209.957 kb on - strand, within PFR28_00187at 209.957 kb on - strand, within PFR28_00187at 209.957 kb on - strand, within PFR28_00187at 209.957 kb on - strand, within PFR28_00187at 209.957 kb on - strand, within PFR28_00187at 209.957 kb on - strand, within PFR28_00187at 209.957 kb on - strand, within PFR28_00187at 210.143 kb on + strand, within PFR28_00187at 210.165 kb on + strand, within PFR28_00187at 210.165 kb on + strand, within PFR28_00187at 210.165 kb on + strand, within PFR28_00187at 210.166 kb on - strand, within PFR28_00187at 210.166 kb on - strand, within PFR28_00187at 210.166 kb on - strand, within PFR28_00187at 210.166 kb on - strand, within PFR28_00187at 210.166 kb on - strand, within PFR28_00187at 210.172 kb on + strand, within PFR28_00187at 210.212 kb on + strand, within PFR28_00187at 210.212 kb on + strand, within PFR28_00187at 210.212 kb on + strand, within PFR28_00187at 210.212 kb on + strand, within PFR28_00187at 210.212 kb on + strand, within PFR28_00187at 210.213 kb on - strand, within PFR28_00187at 210.213 kb on - strand, within PFR28_00187at 210.213 kb on - strand, within PFR28_00187at 210.335 kb on + strandat 210.388 kb on - strandat 210.388 kb on - strandat 210.424 kb on + strandat 210.424 kb on + strandat 210.596 kb on - strand, within PFR28_00188at 210.598 kb on + strand, within PFR28_00188at 210.598 kb on + strand, within PFR28_00188at 210.599 kb on - strand, within PFR28_00188at 210.599 kb on - strand, within PFR28_00188at 210.599 kb on - strand, within PFR28_00188at 210.599 kb on - strand, within PFR28_00188at 210.620 kb on + strand, within PFR28_00188at 210.620 kb on + strand, within PFR28_00188at 210.621 kb on - strand, within PFR28_00188at 210.712 kb on + strand, within PFR28_00188at 210.712 kb on + strand, within PFR28_00188at 210.712 kb on + strand, within PFR28_00188at 210.713 kb on - strand, within PFR28_00188at 210.722 kb on - strand, within PFR28_00188at 210.730 kb on + strand, within PFR28_00188at 210.730 kb on + strand, within PFR28_00188at 210.730 kb on + strand, within PFR28_00188at 210.731 kb on - strand, within PFR28_00188at 210.731 kb on - strand, within PFR28_00188at 210.742 kb on + strand, within PFR28_00188at 210.742 kb on + strand, within PFR28_00188at 210.742 kb on + strand, within PFR28_00188at 210.742 kb on + strand, within PFR28_00188at 210.743 kb on - strand, within PFR28_00188at 210.743 kb on - strand, within PFR28_00188at 210.743 kb on - strand, within PFR28_00188at 210.743 kb on - strand, within PFR28_00188at 210.802 kb on + strand, within PFR28_00188at 210.802 kb on + strand, within PFR28_00188at 210.802 kb on + strand, within PFR28_00188at 210.931 kb on + strand, within PFR28_00188at 210.931 kb on + strand, within PFR28_00188at 210.931 kb on + strand, within PFR28_00188at 210.931 kb on + strand, within PFR28_00188at 210.931 kb on + strand, within PFR28_00188at 210.931 kb on + strand, within PFR28_00188at 210.931 kb on + strand, within PFR28_00188at 210.931 kb on + strand, within PFR28_00188at 210.931 kb on + strand, within PFR28_00188at 210.931 kb on + strand, within PFR28_00188at 210.932 kb on - strand, within PFR28_00188at 210.932 kb on - strand, within PFR28_00188at 210.932 kb on - strand, within PFR28_00188at 210.932 kb on - strand, within PFR28_00188at 210.932 kb on - strand, within PFR28_00188at 210.932 kb on - strand, within PFR28_00188at 210.932 kb on - strand, within PFR28_00188at 211.106 kb on - strand, within PFR28_00188at 211.162 kb on + strand, within PFR28_00188at 211.163 kb on - strand, within PFR28_00188at 211.561 kb on + strandat 211.562 kb on - strandat 211.562 kb on - strandat 211.753 kb on + strand, within PFR28_00189at 211.754 kb on - strand, within PFR28_00189at 211.754 kb on - strand, within PFR28_00189at 211.783 kb on + strand, within PFR28_00189at 211.822 kb on + strand, within PFR28_00189at 211.874 kb on + strand, within PFR28_00189at 211.874 kb on + strand, within PFR28_00189at 212.072 kb on + strand, within PFR28_00189at 212.073 kb on - strand, within PFR28_00189at 212.073 kb on - strand, within PFR28_00189at 212.112 kb on + strand, within PFR28_00189at 212.112 kb on + strand, within PFR28_00189at 212.112 kb on + strand, within PFR28_00189at 212.132 kb on + strand, within PFR28_00189at 212.132 kb on + strand, within PFR28_00189at 212.132 kb on + strand, within PFR28_00189at 212.132 kb on + strand, within PFR28_00189at 212.132 kb on + strand, within PFR28_00189at 212.132 kb on + strand, within PFR28_00189at 212.133 kb on - strand, within PFR28_00189at 212.133 kb on - strand, within PFR28_00189at 212.133 kb on - strand, within PFR28_00189at 212.133 kb on - strand, within PFR28_00189at 212.133 kb on - strand, within PFR28_00189at 212.133 kb on - strand, within PFR28_00189at 212.252 kb on + strandat 212.252 kb on + strandat 212.252 kb on + strandat 212.253 kb on - strandat 212.254 kb on + strandat 212.254 kb on + strandat 212.255 kb on - strandat 212.255 kb on - strandat 212.309 kb on + strandat 212.309 kb on + strandat 212.310 kb on - strandat 212.318 kb on + strandat 212.318 kb on + strandat 212.318 kb on + strandat 212.318 kb on + strandat 212.319 kb on - strandat 212.319 kb on - strandat 212.319 kb on - strandat 212.331 kb on - strandat 212.333 kb on + strandat 212.334 kb on - strandat 212.334 kb on - strandat 212.393 kb on + strandat 212.393 kb on + strandat 212.393 kb on + strandat 212.393 kb on + strandat 212.393 kb on + strandat 212.393 kb on + strandat 212.394 kb on - strandat 212.394 kb on - strandat 212.394 kb on - strandat 212.394 kb on - strandat 212.394 kb on - strandat 212.394 kb on - strandat 212.420 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C) 10 mM
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209,384 + PFR28_00187 0.26 -1.8
209,401 + PFR28_00187 0.27 -3.5
209,401 + PFR28_00187 0.27 -2.4
209,401 + PFR28_00187 0.27 -1.6
209,402 - PFR28_00187 0.27 -0.4
209,402 - PFR28_00187 0.27 -1.1
209,402 - PFR28_00187 0.27 -2.4
209,402 - PFR28_00187 0.27 -2.8
209,447 + PFR28_00187 0.30 -1.9
209,447 + PFR28_00187 0.30 -2.1
209,448 - PFR28_00187 0.30 -2.1
209,705 + PFR28_00187 0.50 -1.8
209,705 + PFR28_00187 0.50 -2.3
209,705 + PFR28_00187 0.50 -1.3
209,705 + PFR28_00187 0.50 -0.4
209,705 + PFR28_00187 0.50 -2.2
209,706 - PFR28_00187 0.50 -1.8
209,706 - PFR28_00187 0.50 -2.7
209,706 - PFR28_00187 0.50 -2.9
209,706 - PFR28_00187 0.50 -4.5
209,706 - PFR28_00187 0.50 -2.7
209,706 - PFR28_00187 0.50 -1.6
209,706 - PFR28_00187 0.50 -1.1
209,706 - PFR28_00187 0.50 -3.5
209,706 - PFR28_00187 0.50 -0.4
209,784 + PFR28_00187 0.55 -0.6
209,784 + PFR28_00187 0.55 -1.8
209,784 + PFR28_00187 0.55 +0.2
209,784 + PFR28_00187 0.55 -2.7
209,784 + PFR28_00187 0.55 -2.4
209,784 + PFR28_00187 0.55 -0.6
209,785 - PFR28_00187 0.56 -2.5
209,785 - PFR28_00187 0.56 -2.8
209,785 - PFR28_00187 0.56 -3.1
209,785 - PFR28_00187 0.56 -4.2
209,785 - PFR28_00187 0.56 -2.9
209,922 + PFR28_00187 0.66 -1.8
209,922 + PFR28_00187 0.66 -1.9
209,922 + PFR28_00187 0.66 +1.2
209,923 - PFR28_00187 0.66 -2.5
209,923 - PFR28_00187 0.66 -3.2
209,923 - PFR28_00187 0.66 -2.4
209,956 + PFR28_00187 0.68 -1.4
209,956 + PFR28_00187 0.68 -1.8
209,956 + PFR28_00187 0.68 -1.6
209,956 + PFR28_00187 0.68 -1.9
209,957 - PFR28_00187 0.68 -3.2
209,957 - PFR28_00187 0.68 -2.7
209,957 - PFR28_00187 0.68 -2.4
209,957 - PFR28_00187 0.68 -3.3
209,957 - PFR28_00187 0.68 -1.8
209,957 - PFR28_00187 0.68 -2.8
209,957 - PFR28_00187 0.68 -0.4
210,143 + PFR28_00187 0.82 -1.8
210,165 + PFR28_00187 0.84 -3.1
210,165 + PFR28_00187 0.84 -2.2
210,165 + PFR28_00187 0.84 -2.5
210,166 - PFR28_00187 0.84 -1.9
210,166 - PFR28_00187 0.84 -2.9
210,166 - PFR28_00187 0.84 -3.5
210,166 - PFR28_00187 0.84 -2.1
210,166 - PFR28_00187 0.84 -1.5
210,172 + PFR28_00187 0.84 -0.5
210,212 + PFR28_00187 0.87 -3.5
210,212 + PFR28_00187 0.87 +0.2
210,212 + PFR28_00187 0.87 -2.1
210,212 + PFR28_00187 0.87 +1.2
210,212 + PFR28_00187 0.87 -0.8
210,213 - PFR28_00187 0.88 -1.4
210,213 - PFR28_00187 0.88 -3.4
210,213 - PFR28_00187 0.88 -0.8
210,335 + -2.7
210,388 - -2.9
210,388 - -3.5
210,424 + -2.7
210,424 + -3.5
210,596 - PFR28_00188 0.20 -1.9
210,598 + PFR28_00188 0.21 -2.2
210,598 + PFR28_00188 0.21 -3.1
210,599 - PFR28_00188 0.21 -2.6
210,599 - PFR28_00188 0.21 -2.6
210,599 - PFR28_00188 0.21 -1.9
210,599 - PFR28_00188 0.21 -1.8
210,620 + PFR28_00188 0.23 -2.4
210,620 + PFR28_00188 0.23 -1.8
210,621 - PFR28_00188 0.23 -3.6
210,712 + PFR28_00188 0.31 -2.7
210,712 + PFR28_00188 0.31 -2.6
210,712 + PFR28_00188 0.31 -3.3
210,713 - PFR28_00188 0.31 -2.1
210,722 - PFR28_00188 0.32 -2.9
210,730 + PFR28_00188 0.33 -1.2
210,730 + PFR28_00188 0.33 -3.9
210,730 + PFR28_00188 0.33 -2.2
210,731 - PFR28_00188 0.33 -3.6
210,731 - PFR28_00188 0.33 -3.4
210,742 + PFR28_00188 0.34 -3.5
210,742 + PFR28_00188 0.34 -1.9
210,742 + PFR28_00188 0.34 -4.1
210,742 + PFR28_00188 0.34 -2.4
210,743 - PFR28_00188 0.34 -2.2
210,743 - PFR28_00188 0.34 -0.5
210,743 - PFR28_00188 0.34 -2.9
210,743 - PFR28_00188 0.34 -2.9
210,802 + PFR28_00188 0.40 -3.4
210,802 + PFR28_00188 0.40 -3.4
210,802 + PFR28_00188 0.40 -2.1
210,931 + PFR28_00188 0.52 -2.0
210,931 + PFR28_00188 0.52 -3.0
210,931 + PFR28_00188 0.52 -2.5
210,931 + PFR28_00188 0.52 -1.5
210,931 + PFR28_00188 0.52 -2.9
210,931 + PFR28_00188 0.52 -1.4
210,931 + PFR28_00188 0.52 -1.1
210,931 + PFR28_00188 0.52 -3.6
210,931 + PFR28_00188 0.52 +0.6
210,931 + PFR28_00188 0.52 -1.4
210,932 - PFR28_00188 0.52 -1.8
210,932 - PFR28_00188 0.52 -3.2
210,932 - PFR28_00188 0.52 -2.0
210,932 - PFR28_00188 0.52 -3.0
210,932 - PFR28_00188 0.52 -2.2
210,932 - PFR28_00188 0.52 -2.9
210,932 - PFR28_00188 0.52 -3.3
211,106 - PFR28_00188 0.69 -2.3
211,162 + PFR28_00188 0.74 -1.8
211,163 - PFR28_00188 0.74 -1.2
211,561 + -0.8
211,562 - -0.0
211,562 - +0.4
211,753 + PFR28_00189 0.33 -0.3
211,754 - PFR28_00189 0.33 -0.2
211,754 - PFR28_00189 0.33 -0.2
211,783 + PFR28_00189 0.37 -0.4
211,822 + PFR28_00189 0.42 -0.5
211,874 + PFR28_00189 0.49 -0.4
211,874 + PFR28_00189 0.49 -0.1
212,072 + PFR28_00189 0.77 +0.9
212,073 - PFR28_00189 0.77 -0.5
212,073 - PFR28_00189 0.77 -0.8
212,112 + PFR28_00189 0.82 -0.8
212,112 + PFR28_00189 0.82 -0.0
212,112 + PFR28_00189 0.82 -0.2
212,132 + PFR28_00189 0.85 +0.8
212,132 + PFR28_00189 0.85 -0.5
212,132 + PFR28_00189 0.85 +0.3
212,132 + PFR28_00189 0.85 +0.0
212,132 + PFR28_00189 0.85 +0.7
212,132 + PFR28_00189 0.85 -0.1
212,133 - PFR28_00189 0.85 +0.5
212,133 - PFR28_00189 0.85 +0.3
212,133 - PFR28_00189 0.85 -0.0
212,133 - PFR28_00189 0.85 +1.1
212,133 - PFR28_00189 0.85 -0.4
212,133 - PFR28_00189 0.85 -0.8
212,252 + -0.6
212,252 + -0.1
212,252 + -0.0
212,253 - -0.7
212,254 + +1.2
212,254 + -1.5
212,255 - +0.4
212,255 - +0.2
212,309 + -0.4
212,309 + +0.2
212,310 - +0.4
212,318 + -0.3
212,318 + +0.7
212,318 + -1.8
212,318 + +0.1
212,319 - -0.4
212,319 - -0.5
212,319 - -0.2
212,331 - +0.1
212,333 + +0.2
212,334 - +0.2
212,334 - -0.2
212,393 + +1.6
212,393 + -0.8
212,393 + +0.0
212,393 + -0.1
212,393 + -0.4
212,393 + +0.6
212,394 - +0.6
212,394 - -0.6
212,394 - -2.2
212,394 - +0.6
212,394 - -0.4
212,394 - +0.4
212,420 + +0.3

Or see this region's nucleotide sequence