Experiment: D-Glucose (C) 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFR28_00042 and PFR28_00043 are separated by 135 nucleotides PFR28_00043 and PFR28_00044 are separated by 46 nucleotides PFR28_00044 and PFR28_00045 overlap by 4 nucleotides
PFR28_00042: PFR28_00042 - 1-aminocyclopropane-1-carboxylate deaminase, at 50,667 to 51,683
_00042
PFR28_00043: PFR28_00043 - hypothetical protein, at 51,819 to 52,277
_00043
PFR28_00044: PFR28_00044 - hypothetical protein, at 52,324 to 52,746
_00044
PFR28_00045: PFR28_00045 - Pyruvate dehydrogenase E1 component, at 52,743 to 55,439
_00045
Position (kb) 52
53 Strain fitness (log2 ratio) -1
0
1 at 51.546 kb on + strand, within PFR28_00042 at 51.546 kb on + strand, within PFR28_00042 at 51.546 kb on + strand, within PFR28_00042 at 51.546 kb on + strand, within PFR28_00042 at 51.554 kb on + strand, within PFR28_00042 at 51.555 kb on - strand, within PFR28_00042 at 51.622 kb on - strand at 51.657 kb on + strand at 51.813 kb on - strand at 51.813 kb on - strand at 51.909 kb on + strand, within PFR28_00043 at 51.909 kb on + strand, within PFR28_00043 at 51.909 kb on + strand, within PFR28_00043 at 51.909 kb on + strand, within PFR28_00043 at 51.910 kb on - strand, within PFR28_00043 at 51.910 kb on - strand, within PFR28_00043 at 51.910 kb on - strand, within PFR28_00043 at 51.937 kb on + strand, within PFR28_00043 at 51.937 kb on + strand, within PFR28_00043 at 51.937 kb on + strand, within PFR28_00043 at 51.938 kb on - strand, within PFR28_00043 at 51.938 kb on - strand, within PFR28_00043 at 51.938 kb on - strand, within PFR28_00043 at 51.938 kb on - strand, within PFR28_00043 at 51.938 kb on - strand, within PFR28_00043 at 52.323 kb on + strand at 52.323 kb on + strand at 52.323 kb on + strand at 52.324 kb on - strand at 52.324 kb on - strand at 52.387 kb on - strand, within PFR28_00044 at 52.387 kb on - strand, within PFR28_00044 at 52.387 kb on - strand, within PFR28_00044 at 52.392 kb on + strand, within PFR28_00044 at 52.935 kb on + strand at 52.935 kb on + strand at 52.936 kb on - strand at 52.936 kb on - strand at 52.936 kb on - strand at 52.943 kb on + strand at 52.943 kb on + strand at 52.943 kb on + strand at 52.943 kb on + strand at 52.944 kb on - strand at 52.944 kb on - strand at 52.944 kb on - strand at 53.088 kb on + strand, within PFR28_00045 at 53.088 kb on + strand, within PFR28_00045 at 53.089 kb on - strand, within PFR28_00045 at 53.175 kb on + strand, within PFR28_00045 at 53.176 kb on - strand, within PFR28_00045 at 53.203 kb on - strand, within PFR28_00045 at 53.383 kb on - strand, within PFR28_00045 at 53.489 kb on + strand, within PFR28_00045 at 53.489 kb on + strand, within PFR28_00045 at 53.490 kb on - strand, within PFR28_00045
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C) 10 mM remove 51,546 + PFR28_00042 0.86 -0.2 51,546 + PFR28_00042 0.86 -0.0 51,546 + PFR28_00042 0.86 -1.4 51,546 + PFR28_00042 0.86 -0.6 51,554 + PFR28_00042 0.87 -0.8 51,555 - PFR28_00042 0.87 +0.3 51,622 - -0.8 51,657 + -0.7 51,813 - -0.6 51,813 - +0.5 51,909 + PFR28_00043 0.20 +0.3 51,909 + PFR28_00043 0.20 +0.6 51,909 + PFR28_00043 0.20 -0.0 51,909 + PFR28_00043 0.20 +0.2 51,910 - PFR28_00043 0.20 +0.3 51,910 - PFR28_00043 0.20 +0.5 51,910 - PFR28_00043 0.20 +0.0 51,937 + PFR28_00043 0.26 -0.8 51,937 + PFR28_00043 0.26 +1.1 51,937 + PFR28_00043 0.26 +0.1 51,938 - PFR28_00043 0.26 -0.5 51,938 - PFR28_00043 0.26 +0.2 51,938 - PFR28_00043 0.26 +1.2 51,938 - PFR28_00043 0.26 +0.6 51,938 - PFR28_00043 0.26 +1.2 52,323 + -0.6 52,323 + -0.2 52,323 + -1.0 52,324 - -0.6 52,324 - -0.4 52,387 - PFR28_00044 0.15 -0.2 52,387 - PFR28_00044 0.15 -0.8 52,387 - PFR28_00044 0.15 -0.9 52,392 + PFR28_00044 0.16 -1.4 52,935 + +0.5 52,935 + -0.6 52,936 - -0.4 52,936 - -0.3 52,936 - -1.4 52,943 + -1.4 52,943 + -0.1 52,943 + -0.5 52,943 + +0.6 52,944 - +0.1 52,944 - +1.0 52,944 - +0.8 53,088 + PFR28_00045 0.13 +0.2 53,088 + PFR28_00045 0.13 +0.3 53,089 - PFR28_00045 0.13 -0.6 53,175 + PFR28_00045 0.16 -0.4 53,176 - PFR28_00045 0.16 +0.2 53,203 - PFR28_00045 0.17 -0.1 53,383 - PFR28_00045 0.24 +0.0 53,489 + PFR28_00045 0.28 +0.1 53,489 + PFR28_00045 0.28 +0.2 53,490 - PFR28_00045 0.28 -0.3
Or see this region's nucleotide sequence