Experiment: Control_ECRC101
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ttdA and cobO are separated by 9 nucleotides cobO and lysR are separated by 33 nucleotides
MCAODC_26115: ttdA - class I fumarate hydratase, at 1,935,414 to 1,937,066
ttdA
MCAODC_26120: cobO - cob(I)yrinic acid a,c-diamide adenosyltransferase, at 1,937,076 to 1,937,678
cobO
MCAODC_26125: lysR - LysR family transcriptional regulator, at 1,937,712 to 1,938,617
lysR
Position (kb) 1937
1938 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 1936.165 kb on - strand, within ttdA at 1936.168 kb on - strand, within ttdA at 1936.217 kb on + strand, within ttdA at 1936.287 kb on + strand, within ttdA at 1936.349 kb on + strand, within ttdA at 1936.349 kb on + strand, within ttdA at 1936.349 kb on + strand, within ttdA at 1936.349 kb on + strand, within ttdA at 1936.350 kb on - strand, within ttdA at 1936.379 kb on + strand, within ttdA at 1936.380 kb on - strand, within ttdA at 1936.443 kb on + strand, within ttdA at 1936.443 kb on + strand, within ttdA at 1936.443 kb on + strand, within ttdA at 1936.444 kb on - strand, within ttdA at 1936.445 kb on + strand, within ttdA at 1936.446 kb on - strand, within ttdA at 1936.486 kb on + strand, within ttdA at 1936.486 kb on + strand, within ttdA at 1936.486 kb on + strand, within ttdA at 1936.487 kb on - strand, within ttdA at 1936.487 kb on - strand, within ttdA at 1936.540 kb on + strand, within ttdA at 1936.564 kb on + strand, within ttdA at 1936.565 kb on - strand, within ttdA at 1936.662 kb on - strand, within ttdA at 1936.671 kb on + strand, within ttdA at 1936.671 kb on + strand, within ttdA at 1936.672 kb on - strand, within ttdA at 1936.749 kb on + strand, within ttdA at 1936.749 kb on + strand, within ttdA at 1936.750 kb on - strand, within ttdA at 1936.751 kb on + strand, within ttdA at 1936.751 kb on + strand, within ttdA at 1936.751 kb on + strand, within ttdA at 1936.752 kb on - strand, within ttdA at 1936.752 kb on - strand, within ttdA at 1936.783 kb on + strand, within ttdA at 1936.783 kb on + strand, within ttdA at 1936.783 kb on + strand, within ttdA at 1936.862 kb on + strand, within ttdA at 1936.862 kb on + strand, within ttdA at 1936.863 kb on - strand, within ttdA at 1936.896 kb on + strand, within ttdA at 1936.896 kb on + strand, within ttdA at 1936.896 kb on + strand, within ttdA at 1936.990 kb on + strand at 1936.990 kb on + strand at 1937.277 kb on + strand, within cobO at 1937.308 kb on - strand, within cobO at 1937.308 kb on - strand, within cobO at 1937.343 kb on - strand, within cobO at 1937.345 kb on + strand, within cobO at 1937.360 kb on + strand, within cobO at 1937.455 kb on + strand, within cobO at 1937.478 kb on + strand, within cobO at 1937.478 kb on + strand, within cobO at 1937.478 kb on + strand, within cobO at 1937.478 kb on + strand, within cobO at 1937.478 kb on + strand, within cobO at 1937.479 kb on - strand, within cobO at 1937.479 kb on - strand, within cobO at 1937.479 kb on - strand, within cobO at 1937.479 kb on - strand, within cobO at 1937.479 kb on - strand, within cobO at 1937.480 kb on + strand, within cobO at 1937.480 kb on + strand, within cobO at 1937.481 kb on - strand, within cobO at 1937.588 kb on - strand, within cobO at 1937.603 kb on + strand, within cobO at 1937.603 kb on + strand, within cobO at 1937.604 kb on - strand, within cobO at 1937.679 kb on + strand at 1937.679 kb on + strand at 1937.714 kb on - strand at 1937.728 kb on - strand at 1937.805 kb on - strand, within lysR at 1937.807 kb on + strand, within lysR at 1938.018 kb on - strand, within lysR at 1938.046 kb on - strand, within lysR at 1938.046 kb on - strand, within lysR at 1938.140 kb on - strand, within lysR at 1938.145 kb on - strand, within lysR at 1938.145 kb on - strand, within lysR at 1938.225 kb on + strand, within lysR at 1938.426 kb on - strand, within lysR at 1938.496 kb on - strand, within lysR at 1938.548 kb on + strand at 1938.675 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECRC101 remove 1,936,165 - ttdA MCAODC_26115 0.45 -0.9 1,936,168 - ttdA MCAODC_26115 0.46 +0.1 1,936,217 + ttdA MCAODC_26115 0.49 +1.4 1,936,287 + ttdA MCAODC_26115 0.53 +0.9 1,936,349 + ttdA MCAODC_26115 0.57 -1.3 1,936,349 + ttdA MCAODC_26115 0.57 -0.2 1,936,349 + ttdA MCAODC_26115 0.57 +0.6 1,936,349 + ttdA MCAODC_26115 0.57 -2.7 1,936,350 - ttdA MCAODC_26115 0.57 -0.8 1,936,379 + ttdA MCAODC_26115 0.58 +0.2 1,936,380 - ttdA MCAODC_26115 0.58 +0.5 1,936,443 + ttdA MCAODC_26115 0.62 +0.4 1,936,443 + ttdA MCAODC_26115 0.62 -1.2 1,936,443 + ttdA MCAODC_26115 0.62 +2.1 1,936,444 - ttdA MCAODC_26115 0.62 -1.7 1,936,445 + ttdA MCAODC_26115 0.62 +1.1 1,936,446 - ttdA MCAODC_26115 0.62 -1.4 1,936,486 + ttdA MCAODC_26115 0.65 -0.5 1,936,486 + ttdA MCAODC_26115 0.65 -1.1 1,936,486 + ttdA MCAODC_26115 0.65 +0.3 1,936,487 - ttdA MCAODC_26115 0.65 +1.7 1,936,487 - ttdA MCAODC_26115 0.65 +0.3 1,936,540 + ttdA MCAODC_26115 0.68 +1.7 1,936,564 + ttdA MCAODC_26115 0.70 -1.4 1,936,565 - ttdA MCAODC_26115 0.70 -0.9 1,936,662 - ttdA MCAODC_26115 0.75 +0.2 1,936,671 + ttdA MCAODC_26115 0.76 -1.6 1,936,671 + ttdA MCAODC_26115 0.76 -1.9 1,936,672 - ttdA MCAODC_26115 0.76 -1.1 1,936,749 + ttdA MCAODC_26115 0.81 +0.5 1,936,749 + ttdA MCAODC_26115 0.81 +0.3 1,936,750 - ttdA MCAODC_26115 0.81 +1.5 1,936,751 + ttdA MCAODC_26115 0.81 +1.1 1,936,751 + ttdA MCAODC_26115 0.81 +1.6 1,936,751 + ttdA MCAODC_26115 0.81 +0.9 1,936,752 - ttdA MCAODC_26115 0.81 -1.0 1,936,752 - ttdA MCAODC_26115 0.81 +0.2 1,936,783 + ttdA MCAODC_26115 0.83 +0.1 1,936,783 + ttdA MCAODC_26115 0.83 -1.5 1,936,783 + ttdA MCAODC_26115 0.83 -0.5 1,936,862 + ttdA MCAODC_26115 0.88 -1.9 1,936,862 + ttdA MCAODC_26115 0.88 +1.2 1,936,863 - ttdA MCAODC_26115 0.88 +0.4 1,936,896 + ttdA MCAODC_26115 0.90 -1.0 1,936,896 + ttdA MCAODC_26115 0.90 -0.4 1,936,896 + ttdA MCAODC_26115 0.90 -1.1 1,936,990 + +0.4 1,936,990 + +0.7 1,937,277 + cobO MCAODC_26120 0.33 -0.3 1,937,308 - cobO MCAODC_26120 0.38 +1.6 1,937,308 - cobO MCAODC_26120 0.38 +0.3 1,937,343 - cobO MCAODC_26120 0.44 +0.8 1,937,345 + cobO MCAODC_26120 0.45 +0.0 1,937,360 + cobO MCAODC_26120 0.47 +2.1 1,937,455 + cobO MCAODC_26120 0.63 +1.6 1,937,478 + cobO MCAODC_26120 0.67 +0.4 1,937,478 + cobO MCAODC_26120 0.67 +0.7 1,937,478 + cobO MCAODC_26120 0.67 -0.5 1,937,478 + cobO MCAODC_26120 0.67 +0.3 1,937,478 + cobO MCAODC_26120 0.67 +0.4 1,937,479 - cobO MCAODC_26120 0.67 +0.6 1,937,479 - cobO MCAODC_26120 0.67 -1.1 1,937,479 - cobO MCAODC_26120 0.67 -0.3 1,937,479 - cobO MCAODC_26120 0.67 +2.5 1,937,479 - cobO MCAODC_26120 0.67 -0.5 1,937,480 + cobO MCAODC_26120 0.67 -0.9 1,937,480 + cobO MCAODC_26120 0.67 +1.0 1,937,481 - cobO MCAODC_26120 0.67 +1.1 1,937,588 - cobO MCAODC_26120 0.85 -2.9 1,937,603 + cobO MCAODC_26120 0.87 -0.1 1,937,603 + cobO MCAODC_26120 0.87 -0.7 1,937,604 - cobO MCAODC_26120 0.88 +2.3 1,937,679 + +0.2 1,937,679 + -0.5 1,937,714 - +0.8 1,937,728 - -0.4 1,937,805 - lysR MCAODC_26125 0.10 -0.2 1,937,807 + lysR MCAODC_26125 0.10 -1.5 1,938,018 - lysR MCAODC_26125 0.34 -0.5 1,938,046 - lysR MCAODC_26125 0.37 -1.8 1,938,046 - lysR MCAODC_26125 0.37 +1.0 1,938,140 - lysR MCAODC_26125 0.47 -2.1 1,938,145 - lysR MCAODC_26125 0.48 -0.0 1,938,145 - lysR MCAODC_26125 0.48 +0.1 1,938,225 + lysR MCAODC_26125 0.57 -1.2 1,938,426 - lysR MCAODC_26125 0.79 -0.0 1,938,496 - lysR MCAODC_26125 0.87 +0.5 1,938,548 + -3.9 1,938,675 - +0.1
Or see this region's nucleotide sequence