Experiment: Control_ECRC101
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt int and ybhC are separated by 134 nucleotides ybhC and ybhJ are separated by 140 nucleotides
MCAODC_25865: int - Integrase, at 1,888,441 to 1,889,511
int
MCAODC_25870: ybhC - putative acyl-CoA thioester hydrolase, at 1,889,646 to 1,890,929
ybhC
MCAODC_25875: ybhJ - hydratase, at 1,891,070 to 1,893,331
ybhJ
Position (kb) 1889
1890
1891 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 1888.653 kb on + strand, within int at 1888.654 kb on - strand, within int at 1888.662 kb on + strand, within int at 1888.662 kb on + strand, within int at 1888.668 kb on - strand, within int at 1888.668 kb on - strand, within int at 1888.738 kb on + strand, within int at 1888.738 kb on + strand, within int at 1888.739 kb on - strand, within int at 1888.831 kb on + strand, within int at 1888.831 kb on + strand, within int at 1888.832 kb on - strand, within int at 1888.832 kb on - strand, within int at 1888.832 kb on - strand, within int at 1888.835 kb on + strand, within int at 1888.836 kb on - strand, within int at 1888.836 kb on - strand, within int at 1888.836 kb on - strand, within int at 1888.865 kb on + strand, within int at 1888.904 kb on + strand, within int at 1888.904 kb on + strand, within int at 1888.904 kb on + strand, within int at 1888.904 kb on + strand, within int at 1888.905 kb on - strand, within int at 1888.917 kb on + strand, within int at 1888.917 kb on + strand, within int at 1888.918 kb on - strand, within int at 1888.918 kb on - strand, within int at 1888.918 kb on - strand, within int at 1888.918 kb on - strand, within int at 1888.919 kb on + strand, within int at 1888.919 kb on + strand, within int at 1888.919 kb on + strand, within int at 1888.919 kb on + strand, within int at 1888.919 kb on + strand, within int at 1888.919 kb on + strand, within int at 1888.920 kb on - strand, within int at 1888.920 kb on - strand, within int at 1888.965 kb on - strand, within int at 1888.993 kb on + strand, within int at 1889.087 kb on + strand, within int at 1889.114 kb on + strand, within int at 1889.114 kb on + strand, within int at 1889.114 kb on + strand, within int at 1889.115 kb on - strand, within int at 1889.115 kb on - strand, within int at 1889.115 kb on - strand, within int at 1889.123 kb on - strand, within int at 1889.129 kb on - strand, within int at 1889.170 kb on - strand, within int at 1889.253 kb on - strand, within int at 1889.262 kb on + strand, within int at 1889.263 kb on - strand, within int at 1889.294 kb on + strand, within int at 1889.302 kb on + strand, within int at 1889.303 kb on - strand, within int at 1889.308 kb on - strand, within int at 1889.392 kb on + strand, within int at 1889.393 kb on - strand, within int at 1889.405 kb on + strand at 1889.439 kb on + strand at 1889.439 kb on + strand at 1889.440 kb on - strand at 1889.586 kb on + strand at 1889.587 kb on - strand at 1889.711 kb on + strand at 1889.759 kb on + strand at 1889.760 kb on - strand at 1889.817 kb on + strand, within ybhC at 1889.817 kb on + strand, within ybhC at 1889.920 kb on + strand, within ybhC at 1889.920 kb on + strand, within ybhC at 1889.920 kb on + strand, within ybhC at 1889.928 kb on - strand, within ybhC at 1889.985 kb on + strand, within ybhC at 1890.024 kb on + strand, within ybhC at 1890.024 kb on + strand, within ybhC at 1890.024 kb on + strand, within ybhC at 1890.024 kb on + strand, within ybhC at 1890.024 kb on + strand, within ybhC at 1890.025 kb on - strand, within ybhC at 1890.025 kb on - strand, within ybhC at 1890.050 kb on + strand, within ybhC at 1890.050 kb on + strand, within ybhC at 1890.057 kb on + strand, within ybhC at 1890.159 kb on + strand, within ybhC at 1890.159 kb on + strand, within ybhC at 1890.159 kb on + strand, within ybhC at 1890.159 kb on + strand, within ybhC at 1890.160 kb on - strand, within ybhC at 1890.160 kb on - strand, within ybhC at 1890.170 kb on + strand, within ybhC at 1890.171 kb on - strand, within ybhC at 1890.183 kb on + strand, within ybhC at 1890.183 kb on + strand, within ybhC at 1890.184 kb on - strand, within ybhC at 1890.184 kb on - strand, within ybhC at 1890.185 kb on + strand, within ybhC at 1890.186 kb on - strand, within ybhC at 1890.186 kb on - strand, within ybhC at 1890.189 kb on + strand, within ybhC at 1890.189 kb on + strand, within ybhC at 1890.189 kb on + strand, within ybhC at 1890.189 kb on + strand, within ybhC at 1890.189 kb on + strand, within ybhC at 1890.189 kb on + strand, within ybhC at 1890.189 kb on + strand, within ybhC at 1890.190 kb on - strand, within ybhC at 1890.190 kb on - strand, within ybhC at 1890.190 kb on - strand, within ybhC at 1890.194 kb on + strand, within ybhC at 1890.313 kb on + strand, within ybhC at 1890.313 kb on + strand, within ybhC at 1890.313 kb on + strand, within ybhC at 1890.313 kb on + strand, within ybhC at 1890.314 kb on - strand, within ybhC at 1890.480 kb on + strand, within ybhC at 1890.480 kb on + strand, within ybhC at 1890.480 kb on + strand, within ybhC at 1890.481 kb on - strand, within ybhC at 1890.481 kb on - strand, within ybhC at 1890.563 kb on + strand, within ybhC at 1890.563 kb on + strand, within ybhC at 1890.579 kb on + strand, within ybhC at 1890.579 kb on + strand, within ybhC at 1890.579 kb on + strand, within ybhC at 1890.579 kb on + strand, within ybhC at 1890.579 kb on + strand, within ybhC at 1890.580 kb on - strand, within ybhC at 1890.580 kb on - strand, within ybhC at 1890.613 kb on - strand, within ybhC at 1890.632 kb on - strand, within ybhC at 1890.702 kb on - strand, within ybhC at 1890.785 kb on + strand, within ybhC at 1890.786 kb on - strand, within ybhC at 1890.835 kb on + strand at 1890.835 kb on + strand at 1890.836 kb on - strand at 1890.857 kb on + strand at 1890.857 kb on + strand at 1890.861 kb on + strand at 1890.861 kb on + strand at 1890.862 kb on - strand at 1890.862 kb on - strand at 1890.862 kb on - strand at 1890.862 kb on - strand at 1890.862 kb on - strand at 1890.862 kb on - strand at 1890.879 kb on + strand at 1890.880 kb on - strand at 1890.927 kb on + strand at 1890.927 kb on + strand at 1890.927 kb on + strand at 1890.927 kb on + strand at 1890.927 kb on + strand at 1890.928 kb on - strand at 1890.928 kb on - strand at 1890.935 kb on - strand at 1890.937 kb on + strand at 1890.937 kb on + strand at 1890.941 kb on + strand at 1890.978 kb on - strand at 1890.996 kb on + strand at 1890.996 kb on + strand at 1891.033 kb on + strand at 1891.033 kb on + strand at 1891.033 kb on + strand at 1891.033 kb on + strand at 1891.034 kb on - strand at 1891.052 kb on - strand at 1891.105 kb on + strand at 1891.105 kb on + strand at 1891.152 kb on + strand at 1891.152 kb on + strand at 1891.152 kb on + strand at 1891.152 kb on + strand at 1891.153 kb on - strand at 1891.153 kb on - strand at 1891.194 kb on + strand at 1891.194 kb on + strand at 1891.195 kb on - strand at 1891.249 kb on - strand at 1891.249 kb on - strand at 1891.255 kb on - strand at 1891.322 kb on - strand, within ybhJ at 1891.322 kb on - strand, within ybhJ at 1891.330 kb on - strand, within ybhJ at 1891.472 kb on - strand, within ybhJ at 1891.472 kb on - strand, within ybhJ at 1891.495 kb on + strand, within ybhJ at 1891.570 kb on + strand, within ybhJ at 1891.584 kb on + strand, within ybhJ at 1891.585 kb on - strand, within ybhJ at 1891.585 kb on - strand, within ybhJ at 1891.609 kb on + strand, within ybhJ at 1891.759 kb on + strand, within ybhJ at 1891.816 kb on - strand, within ybhJ at 1891.838 kb on + strand, within ybhJ at 1891.839 kb on - strand, within ybhJ at 1891.852 kb on - strand, within ybhJ at 1891.896 kb on - strand, within ybhJ
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECRC101 remove 1,888,653 + int MCAODC_25865 0.20 -0.1 1,888,654 - int MCAODC_25865 0.20 +0.4 1,888,662 + int MCAODC_25865 0.21 +0.6 1,888,662 + int MCAODC_25865 0.21 -2.0 1,888,668 - int MCAODC_25865 0.21 +0.4 1,888,668 - int MCAODC_25865 0.21 +0.6 1,888,738 + int MCAODC_25865 0.28 +1.3 1,888,738 + int MCAODC_25865 0.28 -0.9 1,888,739 - int MCAODC_25865 0.28 +0.8 1,888,831 + int MCAODC_25865 0.36 -0.0 1,888,831 + int MCAODC_25865 0.36 +0.3 1,888,832 - int MCAODC_25865 0.37 +0.0 1,888,832 - int MCAODC_25865 0.37 +0.3 1,888,832 - int MCAODC_25865 0.37 +0.6 1,888,835 + int MCAODC_25865 0.37 -1.1 1,888,836 - int MCAODC_25865 0.37 -1.1 1,888,836 - int MCAODC_25865 0.37 -1.7 1,888,836 - int MCAODC_25865 0.37 -0.3 1,888,865 + int MCAODC_25865 0.40 -0.0 1,888,904 + int MCAODC_25865 0.43 -0.5 1,888,904 + int MCAODC_25865 0.43 -1.4 1,888,904 + int MCAODC_25865 0.43 -1.1 1,888,904 + int MCAODC_25865 0.43 -3.4 1,888,905 - int MCAODC_25865 0.43 +0.6 1,888,917 + int MCAODC_25865 0.44 +1.0 1,888,917 + int MCAODC_25865 0.44 -0.1 1,888,918 - int MCAODC_25865 0.45 -0.2 1,888,918 - int MCAODC_25865 0.45 +1.2 1,888,918 - int MCAODC_25865 0.45 +0.8 1,888,918 - int MCAODC_25865 0.45 +0.5 1,888,919 + int MCAODC_25865 0.45 -0.4 1,888,919 + int MCAODC_25865 0.45 +0.8 1,888,919 + int MCAODC_25865 0.45 +0.4 1,888,919 + int MCAODC_25865 0.45 -1.1 1,888,919 + int MCAODC_25865 0.45 -0.5 1,888,919 + int MCAODC_25865 0.45 -0.4 1,888,920 - int MCAODC_25865 0.45 -0.9 1,888,920 - int MCAODC_25865 0.45 +0.7 1,888,965 - int MCAODC_25865 0.49 +0.4 1,888,993 + int MCAODC_25865 0.52 +0.9 1,889,087 + int MCAODC_25865 0.60 +0.5 1,889,114 + int MCAODC_25865 0.63 +0.9 1,889,114 + int MCAODC_25865 0.63 +1.0 1,889,114 + int MCAODC_25865 0.63 -1.1 1,889,115 - int MCAODC_25865 0.63 -0.9 1,889,115 - int MCAODC_25865 0.63 +0.1 1,889,115 - int MCAODC_25865 0.63 -0.4 1,889,123 - int MCAODC_25865 0.64 +1.4 1,889,129 - int MCAODC_25865 0.64 -0.3 1,889,170 - int MCAODC_25865 0.68 +2.3 1,889,253 - int MCAODC_25865 0.76 +0.6 1,889,262 + int MCAODC_25865 0.77 +0.9 1,889,263 - int MCAODC_25865 0.77 -0.1 1,889,294 + int MCAODC_25865 0.80 +0.2 1,889,302 + int MCAODC_25865 0.80 +0.8 1,889,303 - int MCAODC_25865 0.80 +0.1 1,889,308 - int MCAODC_25865 0.81 +0.0 1,889,392 + int MCAODC_25865 0.89 +0.6 1,889,393 - int MCAODC_25865 0.89 -0.2 1,889,405 + +0.4 1,889,439 + +0.5 1,889,439 + +0.1 1,889,440 - +0.8 1,889,586 + +0.2 1,889,587 - -0.3 1,889,711 + +1.8 1,889,759 + +0.5 1,889,760 - +0.1 1,889,817 + ybhC MCAODC_25870 0.13 +1.0 1,889,817 + ybhC MCAODC_25870 0.13 -0.0 1,889,920 + ybhC MCAODC_25870 0.21 +0.9 1,889,920 + ybhC MCAODC_25870 0.21 +0.2 1,889,920 + ybhC MCAODC_25870 0.21 +1.0 1,889,928 - ybhC MCAODC_25870 0.22 +1.4 1,889,985 + ybhC MCAODC_25870 0.26 +0.6 1,890,024 + ybhC MCAODC_25870 0.29 -0.1 1,890,024 + ybhC MCAODC_25870 0.29 -0.0 1,890,024 + ybhC MCAODC_25870 0.29 +0.3 1,890,024 + ybhC MCAODC_25870 0.29 -0.5 1,890,024 + ybhC MCAODC_25870 0.29 +0.8 1,890,025 - ybhC MCAODC_25870 0.30 +0.9 1,890,025 - ybhC MCAODC_25870 0.30 -0.9 1,890,050 + ybhC MCAODC_25870 0.31 -0.1 1,890,050 + ybhC MCAODC_25870 0.31 +1.4 1,890,057 + ybhC MCAODC_25870 0.32 -1.1 1,890,159 + ybhC MCAODC_25870 0.40 -0.8 1,890,159 + ybhC MCAODC_25870 0.40 -2.7 1,890,159 + ybhC MCAODC_25870 0.40 +1.4 1,890,159 + ybhC MCAODC_25870 0.40 +1.1 1,890,160 - ybhC MCAODC_25870 0.40 -0.5 1,890,160 - ybhC MCAODC_25870 0.40 -1.3 1,890,170 + ybhC MCAODC_25870 0.41 +0.7 1,890,171 - ybhC MCAODC_25870 0.41 +0.7 1,890,183 + ybhC MCAODC_25870 0.42 +0.9 1,890,183 + ybhC MCAODC_25870 0.42 +1.8 1,890,184 - ybhC MCAODC_25870 0.42 +1.9 1,890,184 - ybhC MCAODC_25870 0.42 -1.1 1,890,185 + ybhC MCAODC_25870 0.42 +0.2 1,890,186 - ybhC MCAODC_25870 0.42 -2.0 1,890,186 - ybhC MCAODC_25870 0.42 -0.8 1,890,189 + ybhC MCAODC_25870 0.42 -0.1 1,890,189 + ybhC MCAODC_25870 0.42 -0.7 1,890,189 + ybhC MCAODC_25870 0.42 +1.3 1,890,189 + ybhC MCAODC_25870 0.42 +1.0 1,890,189 + ybhC MCAODC_25870 0.42 -0.2 1,890,189 + ybhC MCAODC_25870 0.42 +0.9 1,890,189 + ybhC MCAODC_25870 0.42 +1.6 1,890,190 - ybhC MCAODC_25870 0.42 +1.8 1,890,190 - ybhC MCAODC_25870 0.42 +1.3 1,890,190 - ybhC MCAODC_25870 0.42 -1.5 1,890,194 + ybhC MCAODC_25870 0.43 +0.1 1,890,313 + ybhC MCAODC_25870 0.52 +0.5 1,890,313 + ybhC MCAODC_25870 0.52 +1.2 1,890,313 + ybhC MCAODC_25870 0.52 +0.2 1,890,313 + ybhC MCAODC_25870 0.52 +2.5 1,890,314 - ybhC MCAODC_25870 0.52 +0.4 1,890,480 + ybhC MCAODC_25870 0.65 +1.2 1,890,480 + ybhC MCAODC_25870 0.65 +1.0 1,890,480 + ybhC MCAODC_25870 0.65 -1.1 1,890,481 - ybhC MCAODC_25870 0.65 -1.0 1,890,481 - ybhC MCAODC_25870 0.65 -0.3 1,890,563 + ybhC MCAODC_25870 0.71 +0.7 1,890,563 + ybhC MCAODC_25870 0.71 +0.4 1,890,579 + ybhC MCAODC_25870 0.73 +0.9 1,890,579 + ybhC MCAODC_25870 0.73 +0.1 1,890,579 + ybhC MCAODC_25870 0.73 +0.6 1,890,579 + ybhC MCAODC_25870 0.73 +1.0 1,890,579 + ybhC MCAODC_25870 0.73 +1.0 1,890,580 - ybhC MCAODC_25870 0.73 +0.4 1,890,580 - ybhC MCAODC_25870 0.73 +1.2 1,890,613 - ybhC MCAODC_25870 0.75 +1.5 1,890,632 - ybhC MCAODC_25870 0.77 +1.1 1,890,702 - ybhC MCAODC_25870 0.82 +1.3 1,890,785 + ybhC MCAODC_25870 0.89 +0.0 1,890,786 - ybhC MCAODC_25870 0.89 +0.9 1,890,835 + -0.1 1,890,835 + -0.4 1,890,836 - -1.1 1,890,857 + -0.7 1,890,857 + -0.5 1,890,861 + +0.7 1,890,861 + +0.9 1,890,862 - -0.8 1,890,862 - -2.0 1,890,862 - -1.3 1,890,862 - -2.2 1,890,862 - -1.6 1,890,862 - -1.1 1,890,879 + +0.6 1,890,880 - -2.4 1,890,927 + -2.2 1,890,927 + -2.2 1,890,927 + -0.9 1,890,927 + +0.3 1,890,927 + -0.5 1,890,928 - -0.1 1,890,928 - -0.5 1,890,935 - +0.6 1,890,937 + -2.0 1,890,937 + -0.4 1,890,941 + +0.4 1,890,978 - +1.3 1,890,996 + +0.8 1,890,996 + +0.3 1,891,033 + +1.4 1,891,033 + -1.6 1,891,033 + -0.5 1,891,033 + -0.1 1,891,034 - +1.1 1,891,052 - +0.3 1,891,105 + +0.6 1,891,105 + +0.4 1,891,152 + +4.1 1,891,152 + -1.0 1,891,152 + +0.7 1,891,152 + +0.1 1,891,153 - -0.6 1,891,153 - -1.2 1,891,194 + -1.6 1,891,194 + +0.2 1,891,195 - +0.7 1,891,249 - +0.1 1,891,249 - +1.3 1,891,255 - +0.2 1,891,322 - ybhJ MCAODC_25875 0.11 -0.4 1,891,322 - ybhJ MCAODC_25875 0.11 +0.2 1,891,330 - ybhJ MCAODC_25875 0.11 +3.0 1,891,472 - ybhJ MCAODC_25875 0.18 -0.9 1,891,472 - ybhJ MCAODC_25875 0.18 -0.3 1,891,495 + ybhJ MCAODC_25875 0.19 +1.0 1,891,570 + ybhJ MCAODC_25875 0.22 +0.5 1,891,584 + ybhJ MCAODC_25875 0.23 +0.2 1,891,585 - ybhJ MCAODC_25875 0.23 -0.4 1,891,585 - ybhJ MCAODC_25875 0.23 +1.0 1,891,609 + ybhJ MCAODC_25875 0.24 +0.8 1,891,759 + ybhJ MCAODC_25875 0.30 +0.3 1,891,816 - ybhJ MCAODC_25875 0.33 -0.2 1,891,838 + ybhJ MCAODC_25875 0.34 -0.1 1,891,839 - ybhJ MCAODC_25875 0.34 -0.7 1,891,852 - ybhJ MCAODC_25875 0.35 -0.8 1,891,896 - ybhJ MCAODC_25875 0.37 -0.6
Or see this region's nucleotide sequence