Experiment: Control_ECRC101
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt cadC1 and MCAODC_23900 are separated by 4 nucleotides MCAODC_23900 and eAL are separated by 101 nucleotides eAL and MCAODC_23910 are separated by 97 nucleotides MCAODC_23910 and MCAODC_23915 overlap by 4 nucleotides
MCAODC_23895: cadC1 - transcriptional regulator, at 1,502,800 to 1,503,612
cadC1
MCAODC_23900: MCAODC_23900 - FidL, at 1,503,617 to 1,504,108
_23900
MCAODC_23905: eAL - EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant), at 1,504,210 to 1,505,820
eAL
MCAODC_23910: MCAODC_23910 - GGDEF domain-containing protein, at 1,505,918 to 1,506,334
_23910
MCAODC_23915: MCAODC_23915 - Putative diguanylate cyclase, at 1,506,331 to 1,507,275
_23915
Position (kb) 1504
1505
1506 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 1503.251 kb on + strand, within cadC1 at 1504.264 kb on + strand at 1504.566 kb on + strand, within eAL at 1505.305 kb on + strand, within eAL at 1505.616 kb on + strand, within eAL at 1505.690 kb on - strand at 1505.772 kb on - strand at 1505.797 kb on - strand at 1505.988 kb on + strand, within MCAODC_23910 at 1506.086 kb on - strand, within MCAODC_23910 at 1506.231 kb on - strand, within MCAODC_23910 at 1506.464 kb on - strand, within MCAODC_23915
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECRC101 remove 1,503,251 + cadC1 MCAODC_23895 0.55 -0.5 1,504,264 + -1.4 1,504,566 + eAL MCAODC_23905 0.22 +0.6 1,505,305 + eAL MCAODC_23905 0.68 +3.2 1,505,616 + eAL MCAODC_23905 0.87 +0.2 1,505,690 - -1.9 1,505,772 - -0.8 1,505,797 - -2.1 1,505,988 + MCAODC_23910 0.17 -0.1 1,506,086 - MCAODC_23910 0.40 -2.1 1,506,231 - MCAODC_23910 0.75 -0.4 1,506,464 - MCAODC_23915 0.14 +1.1
Or see this region's nucleotide sequence