Experiment: Control_ECRC101
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MCAODC_23265 and MCAODC_23270 are separated by 49 nucleotides MCAODC_23270 and MCAODC_23275 overlap by 1 nucleotides MCAODC_23275 and yeeS are separated by 62 nucleotides yeeS and MCAODC_23285 are separated by 15 nucleotides MCAODC_23285 and MCAODC_23290 are separated by 90 nucleotides
MCAODC_23265: MCAODC_23265 - antitoxin, at 1,385,969 to 1,386,343
_23265
MCAODC_23270: MCAODC_23270 - Phage-related protein, at 1,386,393 to 1,386,506
_23270
MCAODC_23275: MCAODC_23275 - DUF987 domain-containing protein, at 1,386,506 to 1,386,727
_23275
MCAODC_23280: yeeS - UPF0758 protein YeeS, at 1,386,790 to 1,387,266
yeeS
MCAODC_23285: MCAODC_23285 - restriction endonuclease, at 1,387,282 to 1,387,767
_23285
MCAODC_23290: MCAODC_23290 - DUF945 domain-containing protein, at 1,387,858 to 1,388,676
_23290
Position (kb) 1387
1388 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1386.381 kb on - strand at 1386.427 kb on + strand, within MCAODC_23270 at 1386.427 kb on + strand, within MCAODC_23270 at 1386.427 kb on + strand, within MCAODC_23270 at 1386.428 kb on - strand, within MCAODC_23270 at 1386.428 kb on - strand, within MCAODC_23270 at 1386.428 kb on - strand, within MCAODC_23270 at 1386.428 kb on - strand, within MCAODC_23270 at 1386.537 kb on + strand, within MCAODC_23275 at 1386.537 kb on + strand, within MCAODC_23275 at 1386.538 kb on - strand, within MCAODC_23275 at 1386.538 kb on - strand, within MCAODC_23275 at 1386.613 kb on + strand, within MCAODC_23275 at 1386.614 kb on - strand, within MCAODC_23275 at 1386.615 kb on + strand, within MCAODC_23275 at 1386.615 kb on + strand, within MCAODC_23275 at 1386.615 kb on + strand, within MCAODC_23275 at 1386.616 kb on - strand, within MCAODC_23275 at 1386.642 kb on + strand, within MCAODC_23275 at 1386.646 kb on + strand, within MCAODC_23275 at 1386.653 kb on - strand, within MCAODC_23275 at 1386.694 kb on + strand, within MCAODC_23275 at 1387.079 kb on + strand, within yeeS at 1387.300 kb on - strand at 1387.332 kb on - strand, within MCAODC_23285 at 1387.349 kb on + strand, within MCAODC_23285 at 1387.349 kb on + strand, within MCAODC_23285 at 1387.349 kb on + strand, within MCAODC_23285 at 1387.367 kb on + strand, within MCAODC_23285 at 1387.368 kb on - strand, within MCAODC_23285 at 1387.397 kb on + strand, within MCAODC_23285 at 1387.397 kb on + strand, within MCAODC_23285 at 1387.398 kb on - strand, within MCAODC_23285 at 1387.565 kb on + strand, within MCAODC_23285 at 1387.749 kb on + strand at 1388.307 kb on + strand, within MCAODC_23290 at 1388.541 kb on - strand, within MCAODC_23290 at 1388.566 kb on - strand, within MCAODC_23290 at 1388.593 kb on + strand, within MCAODC_23290 at 1388.593 kb on + strand, within MCAODC_23290 at 1388.594 kb on - strand, within MCAODC_23290 at 1388.594 kb on - strand, within MCAODC_23290 at 1388.689 kb on - strand at 1388.708 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECRC101 remove 1,386,381 - -0.8 1,386,427 + MCAODC_23270 0.30 +1.5 1,386,427 + MCAODC_23270 0.30 -0.4 1,386,427 + MCAODC_23270 0.30 -1.3 1,386,428 - MCAODC_23270 0.31 -1.4 1,386,428 - MCAODC_23270 0.31 +0.6 1,386,428 - MCAODC_23270 0.31 +0.5 1,386,428 - MCAODC_23270 0.31 -0.5 1,386,537 + MCAODC_23275 0.14 -0.5 1,386,537 + MCAODC_23275 0.14 -1.1 1,386,538 - MCAODC_23275 0.14 -1.7 1,386,538 - MCAODC_23275 0.14 +1.0 1,386,613 + MCAODC_23275 0.48 -0.5 1,386,614 - MCAODC_23275 0.49 +0.8 1,386,615 + MCAODC_23275 0.49 +1.1 1,386,615 + MCAODC_23275 0.49 +0.1 1,386,615 + MCAODC_23275 0.49 +0.6 1,386,616 - MCAODC_23275 0.50 +0.9 1,386,642 + MCAODC_23275 0.61 -0.1 1,386,646 + MCAODC_23275 0.63 +0.1 1,386,653 - MCAODC_23275 0.66 +0.7 1,386,694 + MCAODC_23275 0.85 +0.9 1,387,079 + yeeS MCAODC_23280 0.61 -1.5 1,387,300 - -1.1 1,387,332 - MCAODC_23285 0.10 -2.9 1,387,349 + MCAODC_23285 0.14 +0.9 1,387,349 + MCAODC_23285 0.14 -1.2 1,387,349 + MCAODC_23285 0.14 +0.4 1,387,367 + MCAODC_23285 0.17 +1.7 1,387,368 - MCAODC_23285 0.18 -1.5 1,387,397 + MCAODC_23285 0.24 +1.8 1,387,397 + MCAODC_23285 0.24 +0.1 1,387,398 - MCAODC_23285 0.24 +1.5 1,387,565 + MCAODC_23285 0.58 +1.1 1,387,749 + -0.2 1,388,307 + MCAODC_23290 0.55 -0.9 1,388,541 - MCAODC_23290 0.83 +0.6 1,388,566 - MCAODC_23290 0.86 +0.2 1,388,593 + MCAODC_23290 0.90 +0.2 1,388,593 + MCAODC_23290 0.90 -2.5 1,388,594 - MCAODC_23290 0.90 -0.5 1,388,594 - MCAODC_23290 0.90 +1.3 1,388,689 - -1.5 1,388,708 - -0.5
Or see this region's nucleotide sequence