Strain Fitness in Escherichia coli ECRC101 around MCAODC_22685

Experiment: Control_ECRC101

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMCAODC_22680 and MCAODC_22685 are separated by 447 nucleotidesMCAODC_22685 and MCAODC_22695 are separated by 188 nucleotidesMCAODC_22695 and MCAODC_22700 are separated by 115 nucleotidesMCAODC_22700 and MCAODC_22705 are separated by 2 nucleotides MCAODC_22680: MCAODC_22680 - DUF968 domain-containing protein, at 1,287,656 to 1,288,705 _22680 MCAODC_22685: MCAODC_22685 - protein hokC, at 1,289,153 to 1,289,365 _22685 MCAODC_22695: MCAODC_22695 - hypothetical protein, at 1,289,554 to 1,289,658 _22695 MCAODC_22700: MCAODC_22700 - DUF551 domain-containing protein, at 1,289,774 to 1,290,361 _22700 MCAODC_22705: MCAODC_22705 - hypothetical protein, at 1,290,364 to 1,290,555 _22705 Position (kb) 1289 1290Strain fitness (log2 ratio) -1 0 1at 1289.286 kb on - strand, within MCAODC_22685at 1290.198 kb on - strand, within MCAODC_22700at 1290.306 kb on + strandat 1290.362 kb on - strandat 1290.362 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_ECRC101
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1,289,286 - MCAODC_22685 0.62 +0.7
1,290,198 - MCAODC_22700 0.72 -0.7
1,290,306 + +0.9
1,290,362 - +0.7
1,290,362 - +1.2

Or see this region's nucleotide sequence