Strain Fitness in Escherichia coli ECRC101 around MCAODC_22085

Experiment: Control_ECRC101

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMCAODC_22075 and MCAODC_22080 are separated by 5 nucleotidesMCAODC_22080 and MCAODC_22085 overlap by 1 nucleotidesMCAODC_22085 and MCAODC_22090 overlap by 4 nucleotides MCAODC_22075: MCAODC_22075 - phage tail protein, at 1,195,924 to 1,196,667 _22075 MCAODC_22080: MCAODC_22080 - phage minor tail protein L, at 1,196,673 to 1,197,371 _22080 MCAODC_22085: MCAODC_22085 - phage tail protein, at 1,197,371 to 1,197,700 _22085 MCAODC_22090: MCAODC_22090 - phage tail tape measure protein, at 1,197,697 to 1,200,246 _22090 Position (kb) 1197 1198Strain fitness (log2 ratio) -2 -1 0 1at 1197.114 kb on - strand, within MCAODC_22080at 1197.119 kb on - strand, within MCAODC_22080at 1197.418 kb on + strand, within MCAODC_22085at 1197.419 kb on - strand, within MCAODC_22085at 1197.455 kb on + strand, within MCAODC_22085at 1197.571 kb on - strand, within MCAODC_22085at 1197.616 kb on - strand, within MCAODC_22085at 1197.912 kb on - strandat 1197.927 kb on - strandat 1198.025 kb on + strand, within MCAODC_22090at 1198.026 kb on - strand, within MCAODC_22090at 1198.026 kb on - strand, within MCAODC_22090at 1198.305 kb on + strand, within MCAODC_22090at 1198.305 kb on + strand, within MCAODC_22090at 1198.306 kb on - strand, within MCAODC_22090at 1198.445 kb on + strand, within MCAODC_22090at 1198.595 kb on + strand, within MCAODC_22090

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_ECRC101
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1,197,114 - MCAODC_22080 0.63 -1.9
1,197,119 - MCAODC_22080 0.64 +0.5
1,197,418 + MCAODC_22085 0.14 +1.5
1,197,419 - MCAODC_22085 0.15 +0.2
1,197,455 + MCAODC_22085 0.25 +0.1
1,197,571 - MCAODC_22085 0.61 +1.1
1,197,616 - MCAODC_22085 0.74 +1.7
1,197,912 - -0.4
1,197,927 - -1.5
1,198,025 + MCAODC_22090 0.13 -0.7
1,198,026 - MCAODC_22090 0.13 -1.1
1,198,026 - MCAODC_22090 0.13 -0.1
1,198,305 + MCAODC_22090 0.24 -0.3
1,198,305 + MCAODC_22090 0.24 -0.3
1,198,306 - MCAODC_22090 0.24 +1.0
1,198,445 + MCAODC_22090 0.29 -0.5
1,198,595 + MCAODC_22090 0.35 +0.5

Or see this region's nucleotide sequence