Experiment: Control_ECRC101
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt minD and minE are separated by 3 nucleotides minE and MCAODC_21970 are separated by 371 nucleotides MCAODC_21970 and tnp-IS3 are separated by 83 nucleotides tnp-IS3 and tnp-IS3 overlap by 1 nucleotides
MCAODC_21960: minD - septum site-determining protein MinD, at 1,173,832 to 1,174,644
minD
MCAODC_21965: minE - cell division topological specificity factor MinE, at 1,174,648 to 1,174,914
minE
MCAODC_21970: MCAODC_21970 - autotransporter outer membrane beta-barrel domain-containing protein, at 1,175,286 to 1,175,996
_21970
MCAODC_21975: tnp-IS3 - IS3 family transposase, at 1,176,080 to 1,176,967
tnp-IS3
MCAODC_21980: tnp-IS3 - IS3 family transposase, at 1,176,967 to 1,177,293
tnp-IS3
Position (kb)
1175
1176 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1174.912 kb on + strand at 1174.923 kb on + strand at 1174.935 kb on + strand at 1175.349 kb on - strand at 1175.351 kb on - strand at 1175.579 kb on - strand, within MCAODC_21970 at 1175.579 kb on - strand, within MCAODC_21970 at 1175.581 kb on - strand, within MCAODC_21970 at 1175.581 kb on - strand, within MCAODC_21970 at 1175.581 kb on - strand, within MCAODC_21970 at 1175.688 kb on - strand, within MCAODC_21970 at 1176.070 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECRC101 remove 1,174,912 + +0.7 1,174,923 + -0.3 1,174,935 + +1.0 1,175,349 - +1.2 1,175,351 - -1.4 1,175,579 - MCAODC_21970 0.41 +1.3 1,175,579 - MCAODC_21970 0.41 +0.9 1,175,581 - MCAODC_21970 0.41 +0.3 1,175,581 - MCAODC_21970 0.41 +0.7 1,175,581 - MCAODC_21970 0.41 -2.3 1,175,688 - MCAODC_21970 0.57 +1.8 1,176,070 - -0.5
Or see this region's nucleotide sequence