Experiment: Control_ECRC101
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MCAODC_21065 and yegV overlap by 4 nucleotides yegV and yegW overlap by 27 nucleotides yegW and yegX are separated by 51 nucleotides yegX and MCAODC_21085 are separated by 64 nucleotides
MCAODC_21065: MCAODC_21065 - ADP-ribosylglycohydrolase family protein, at 1,013,472 to 1,014,476
_21065
MCAODC_21070: yegV - Uncharacterized sugar kinase YegV, at 1,014,473 to 1,015,438
yegV
MCAODC_21075: yegW - Uncharacterized HTH-type transcriptional regulator YegW, at 1,015,412 to 1,016,158
yegW
MCAODC_21080: yegX - Uncharacterized protein YegX, at 1,016,210 to 1,017,028
yegX
MCAODC_21085: MCAODC_21085 - bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase, at 1,017,093 to 1,017,893
_21085
Position (kb)
1015
1016
1017 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1014.510 kb on + strand at 1014.510 kb on + strand at 1014.511 kb on - strand at 1014.573 kb on - strand, within yegV at 1014.753 kb on + strand, within yegV at 1014.832 kb on + strand, within yegV at 1014.954 kb on + strand, within yegV at 1015.012 kb on + strand, within yegV at 1015.013 kb on - strand, within yegV at 1015.013 kb on - strand, within yegV at 1015.035 kb on + strand, within yegV at 1015.036 kb on - strand, within yegV at 1015.129 kb on - strand, within yegV at 1015.205 kb on + strand, within yegV at 1015.206 kb on - strand, within yegV at 1015.297 kb on - strand, within yegV at 1015.339 kb on - strand, within yegV at 1015.529 kb on - strand, within yegW at 1015.624 kb on - strand, within yegW at 1015.665 kb on - strand, within yegW at 1015.716 kb on + strand, within yegW at 1015.723 kb on + strand, within yegW at 1016.001 kb on - strand, within yegW at 1016.023 kb on + strand, within yegW at 1016.080 kb on + strand, within yegW at 1016.192 kb on + strand at 1016.193 kb on - strand at 1016.193 kb on - strand at 1016.193 kb on - strand at 1016.194 kb on + strand at 1016.293 kb on + strand, within yegX at 1016.303 kb on + strand, within yegX at 1016.304 kb on - strand, within yegX at 1016.371 kb on - strand, within yegX at 1016.373 kb on + strand, within yegX at 1016.374 kb on - strand, within yegX at 1016.374 kb on - strand, within yegX at 1016.407 kb on - strand, within yegX at 1016.498 kb on + strand, within yegX at 1016.511 kb on - strand, within yegX at 1016.597 kb on + strand, within yegX at 1016.643 kb on + strand, within yegX at 1016.675 kb on + strand, within yegX at 1016.676 kb on - strand, within yegX at 1016.676 kb on - strand, within yegX at 1016.676 kb on - strand, within yegX at 1016.748 kb on - strand, within yegX at 1016.819 kb on + strand, within yegX at 1016.819 kb on + strand, within yegX at 1016.819 kb on + strand, within yegX at 1016.820 kb on - strand, within yegX at 1016.820 kb on - strand, within yegX at 1016.848 kb on + strand, within yegX at 1016.849 kb on - strand, within yegX at 1016.883 kb on + strand, within yegX at 1016.883 kb on + strand, within yegX at 1016.883 kb on + strand, within yegX at 1016.884 kb on - strand, within yegX at 1016.884 kb on - strand, within yegX at 1016.895 kb on + strand, within yegX at 1016.895 kb on + strand, within yegX at 1016.896 kb on - strand, within yegX at 1016.987 kb on + strand at 1016.988 kb on - strand at 1017.081 kb on - strand at 1017.081 kb on - strand at 1017.082 kb on + strand at 1017.082 kb on + strand at 1017.082 kb on + strand at 1017.082 kb on + strand at 1017.082 kb on + strand at 1017.083 kb on - strand at 1017.083 kb on - strand at 1017.083 kb on - strand at 1017.083 kb on - strand at 1017.083 kb on - strand at 1017.085 kb on + strand at 1017.086 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECRC101 remove 1,014,510 + -2.1 1,014,510 + +0.8 1,014,511 - +0.1 1,014,573 - yegV MCAODC_21070 0.10 +1.0 1,014,753 + yegV MCAODC_21070 0.29 -1.7 1,014,832 + yegV MCAODC_21070 0.37 +0.2 1,014,954 + yegV MCAODC_21070 0.50 -0.3 1,015,012 + yegV MCAODC_21070 0.56 -0.3 1,015,013 - yegV MCAODC_21070 0.56 +3.3 1,015,013 - yegV MCAODC_21070 0.56 +0.7 1,015,035 + yegV MCAODC_21070 0.58 +0.5 1,015,036 - yegV MCAODC_21070 0.58 -0.2 1,015,129 - yegV MCAODC_21070 0.68 -1.0 1,015,205 + yegV MCAODC_21070 0.76 +2.8 1,015,206 - yegV MCAODC_21070 0.76 +1.3 1,015,297 - yegV MCAODC_21070 0.85 -1.9 1,015,339 - yegV MCAODC_21070 0.90 +0.9 1,015,529 - yegW MCAODC_21075 0.16 +1.7 1,015,624 - yegW MCAODC_21075 0.28 -1.2 1,015,665 - yegW MCAODC_21075 0.34 -0.4 1,015,716 + yegW MCAODC_21075 0.41 +0.3 1,015,723 + yegW MCAODC_21075 0.42 +1.0 1,016,001 - yegW MCAODC_21075 0.79 +0.4 1,016,023 + yegW MCAODC_21075 0.82 -0.5 1,016,080 + yegW MCAODC_21075 0.89 +0.5 1,016,192 + +0.0 1,016,193 - -0.2 1,016,193 - -0.1 1,016,193 - +0.1 1,016,194 + +0.3 1,016,293 + yegX MCAODC_21080 0.10 -1.2 1,016,303 + yegX MCAODC_21080 0.11 -0.9 1,016,304 - yegX MCAODC_21080 0.11 +0.1 1,016,371 - yegX MCAODC_21080 0.20 -0.9 1,016,373 + yegX MCAODC_21080 0.20 -0.3 1,016,374 - yegX MCAODC_21080 0.20 +1.2 1,016,374 - yegX MCAODC_21080 0.20 -0.4 1,016,407 - yegX MCAODC_21080 0.24 +1.0 1,016,498 + yegX MCAODC_21080 0.35 +0.2 1,016,511 - yegX MCAODC_21080 0.37 -0.1 1,016,597 + yegX MCAODC_21080 0.47 -0.7 1,016,643 + yegX MCAODC_21080 0.53 +0.2 1,016,675 + yegX MCAODC_21080 0.57 +0.2 1,016,676 - yegX MCAODC_21080 0.57 -0.5 1,016,676 - yegX MCAODC_21080 0.57 -1.4 1,016,676 - yegX MCAODC_21080 0.57 -0.9 1,016,748 - yegX MCAODC_21080 0.66 +0.9 1,016,819 + yegX MCAODC_21080 0.74 -0.3 1,016,819 + yegX MCAODC_21080 0.74 +0.0 1,016,819 + yegX MCAODC_21080 0.74 +0.1 1,016,820 - yegX MCAODC_21080 0.74 -0.6 1,016,820 - yegX MCAODC_21080 0.74 -1.1 1,016,848 + yegX MCAODC_21080 0.78 +0.5 1,016,849 - yegX MCAODC_21080 0.78 +0.8 1,016,883 + yegX MCAODC_21080 0.82 +0.4 1,016,883 + yegX MCAODC_21080 0.82 +0.8 1,016,883 + yegX MCAODC_21080 0.82 +0.3 1,016,884 - yegX MCAODC_21080 0.82 -0.8 1,016,884 - yegX MCAODC_21080 0.82 -2.4 1,016,895 + yegX MCAODC_21080 0.84 -0.0 1,016,895 + yegX MCAODC_21080 0.84 +0.5 1,016,896 - yegX MCAODC_21080 0.84 +0.5 1,016,987 + -1.2 1,016,988 - -0.9 1,017,081 - -1.4 1,017,081 - +1.5 1,017,082 + +1.3 1,017,082 + +0.1 1,017,082 + +0.2 1,017,082 + +2.0 1,017,082 + +1.5 1,017,083 - -1.0 1,017,083 - -2.0 1,017,083 - -0.7 1,017,083 - -1.4 1,017,083 - +0.2 1,017,085 + +0.5 1,017,086 - +0.7
Or see this region's nucleotide sequence