Strain Fitness in Escherichia coli ECRC101 around MCAODC_21075

Experiment: Control_ECRC101

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMCAODC_21065 and yegV overlap by 4 nucleotidesyegV and yegW overlap by 27 nucleotidesyegW and yegX are separated by 51 nucleotidesyegX and MCAODC_21085 are separated by 64 nucleotides MCAODC_21065: MCAODC_21065 - ADP-ribosylglycohydrolase family protein, at 1,013,472 to 1,014,476 _21065 MCAODC_21070: yegV - Uncharacterized sugar kinase YegV, at 1,014,473 to 1,015,438 yegV MCAODC_21075: yegW - Uncharacterized HTH-type transcriptional regulator YegW, at 1,015,412 to 1,016,158 yegW MCAODC_21080: yegX - Uncharacterized protein YegX, at 1,016,210 to 1,017,028 yegX MCAODC_21085: MCAODC_21085 - bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase, at 1,017,093 to 1,017,893 _21085 Position (kb) 1015 1016 1017Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1014.510 kb on + strandat 1014.510 kb on + strandat 1014.511 kb on - strandat 1014.573 kb on - strand, within yegVat 1014.753 kb on + strand, within yegVat 1014.832 kb on + strand, within yegVat 1014.954 kb on + strand, within yegVat 1015.012 kb on + strand, within yegVat 1015.013 kb on - strand, within yegVat 1015.013 kb on - strand, within yegVat 1015.035 kb on + strand, within yegVat 1015.036 kb on - strand, within yegVat 1015.129 kb on - strand, within yegVat 1015.205 kb on + strand, within yegVat 1015.206 kb on - strand, within yegVat 1015.297 kb on - strand, within yegVat 1015.339 kb on - strand, within yegVat 1015.529 kb on - strand, within yegWat 1015.624 kb on - strand, within yegWat 1015.665 kb on - strand, within yegWat 1015.716 kb on + strand, within yegWat 1015.723 kb on + strand, within yegWat 1016.001 kb on - strand, within yegWat 1016.023 kb on + strand, within yegWat 1016.080 kb on + strand, within yegWat 1016.192 kb on + strandat 1016.193 kb on - strandat 1016.193 kb on - strandat 1016.193 kb on - strandat 1016.194 kb on + strandat 1016.293 kb on + strand, within yegXat 1016.303 kb on + strand, within yegXat 1016.304 kb on - strand, within yegXat 1016.371 kb on - strand, within yegXat 1016.373 kb on + strand, within yegXat 1016.374 kb on - strand, within yegXat 1016.374 kb on - strand, within yegXat 1016.407 kb on - strand, within yegXat 1016.498 kb on + strand, within yegXat 1016.511 kb on - strand, within yegXat 1016.597 kb on + strand, within yegXat 1016.643 kb on + strand, within yegXat 1016.675 kb on + strand, within yegXat 1016.676 kb on - strand, within yegXat 1016.676 kb on - strand, within yegXat 1016.676 kb on - strand, within yegXat 1016.748 kb on - strand, within yegXat 1016.819 kb on + strand, within yegXat 1016.819 kb on + strand, within yegXat 1016.819 kb on + strand, within yegXat 1016.820 kb on - strand, within yegXat 1016.820 kb on - strand, within yegXat 1016.848 kb on + strand, within yegXat 1016.849 kb on - strand, within yegXat 1016.883 kb on + strand, within yegXat 1016.883 kb on + strand, within yegXat 1016.883 kb on + strand, within yegXat 1016.884 kb on - strand, within yegXat 1016.884 kb on - strand, within yegXat 1016.895 kb on + strand, within yegXat 1016.895 kb on + strand, within yegXat 1016.896 kb on - strand, within yegXat 1016.987 kb on + strandat 1016.988 kb on - strandat 1017.081 kb on - strandat 1017.081 kb on - strandat 1017.082 kb on + strandat 1017.082 kb on + strandat 1017.082 kb on + strandat 1017.082 kb on + strandat 1017.082 kb on + strandat 1017.083 kb on - strandat 1017.083 kb on - strandat 1017.083 kb on - strandat 1017.083 kb on - strandat 1017.083 kb on - strandat 1017.085 kb on + strandat 1017.086 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_ECRC101
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1,014,510 + -2.1
1,014,510 + +0.8
1,014,511 - +0.1
1,014,573 - yegV MCAODC_21070 0.10 +1.0
1,014,753 + yegV MCAODC_21070 0.29 -1.7
1,014,832 + yegV MCAODC_21070 0.37 +0.2
1,014,954 + yegV MCAODC_21070 0.50 -0.3
1,015,012 + yegV MCAODC_21070 0.56 -0.3
1,015,013 - yegV MCAODC_21070 0.56 +3.3
1,015,013 - yegV MCAODC_21070 0.56 +0.7
1,015,035 + yegV MCAODC_21070 0.58 +0.5
1,015,036 - yegV MCAODC_21070 0.58 -0.2
1,015,129 - yegV MCAODC_21070 0.68 -1.0
1,015,205 + yegV MCAODC_21070 0.76 +2.8
1,015,206 - yegV MCAODC_21070 0.76 +1.3
1,015,297 - yegV MCAODC_21070 0.85 -1.9
1,015,339 - yegV MCAODC_21070 0.90 +0.9
1,015,529 - yegW MCAODC_21075 0.16 +1.7
1,015,624 - yegW MCAODC_21075 0.28 -1.2
1,015,665 - yegW MCAODC_21075 0.34 -0.4
1,015,716 + yegW MCAODC_21075 0.41 +0.3
1,015,723 + yegW MCAODC_21075 0.42 +1.0
1,016,001 - yegW MCAODC_21075 0.79 +0.4
1,016,023 + yegW MCAODC_21075 0.82 -0.5
1,016,080 + yegW MCAODC_21075 0.89 +0.5
1,016,192 + +0.0
1,016,193 - -0.2
1,016,193 - -0.1
1,016,193 - +0.1
1,016,194 + +0.3
1,016,293 + yegX MCAODC_21080 0.10 -1.2
1,016,303 + yegX MCAODC_21080 0.11 -0.9
1,016,304 - yegX MCAODC_21080 0.11 +0.1
1,016,371 - yegX MCAODC_21080 0.20 -0.9
1,016,373 + yegX MCAODC_21080 0.20 -0.3
1,016,374 - yegX MCAODC_21080 0.20 +1.2
1,016,374 - yegX MCAODC_21080 0.20 -0.4
1,016,407 - yegX MCAODC_21080 0.24 +1.0
1,016,498 + yegX MCAODC_21080 0.35 +0.2
1,016,511 - yegX MCAODC_21080 0.37 -0.1
1,016,597 + yegX MCAODC_21080 0.47 -0.7
1,016,643 + yegX MCAODC_21080 0.53 +0.2
1,016,675 + yegX MCAODC_21080 0.57 +0.2
1,016,676 - yegX MCAODC_21080 0.57 -0.5
1,016,676 - yegX MCAODC_21080 0.57 -1.4
1,016,676 - yegX MCAODC_21080 0.57 -0.9
1,016,748 - yegX MCAODC_21080 0.66 +0.9
1,016,819 + yegX MCAODC_21080 0.74 -0.3
1,016,819 + yegX MCAODC_21080 0.74 +0.0
1,016,819 + yegX MCAODC_21080 0.74 +0.1
1,016,820 - yegX MCAODC_21080 0.74 -0.6
1,016,820 - yegX MCAODC_21080 0.74 -1.1
1,016,848 + yegX MCAODC_21080 0.78 +0.5
1,016,849 - yegX MCAODC_21080 0.78 +0.8
1,016,883 + yegX MCAODC_21080 0.82 +0.4
1,016,883 + yegX MCAODC_21080 0.82 +0.8
1,016,883 + yegX MCAODC_21080 0.82 +0.3
1,016,884 - yegX MCAODC_21080 0.82 -0.8
1,016,884 - yegX MCAODC_21080 0.82 -2.4
1,016,895 + yegX MCAODC_21080 0.84 -0.0
1,016,895 + yegX MCAODC_21080 0.84 +0.5
1,016,896 - yegX MCAODC_21080 0.84 +0.5
1,016,987 + -1.2
1,016,988 - -0.9
1,017,081 - -1.4
1,017,081 - +1.5
1,017,082 + +1.3
1,017,082 + +0.1
1,017,082 + +0.2
1,017,082 + +2.0
1,017,082 + +1.5
1,017,083 - -1.0
1,017,083 - -2.0
1,017,083 - -0.7
1,017,083 - -1.4
1,017,083 - +0.2
1,017,085 + +0.5
1,017,086 - +0.7

Or see this region's nucleotide sequence