Strain Fitness in Escherichia coli ECRC101 around MCAODC_21065

Experiment: Control_ECRC101

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyegT and MCAODC_21065 overlap by 4 nucleotidesMCAODC_21065 and yegV overlap by 4 nucleotidesyegV and yegW overlap by 27 nucleotides MCAODC_21060: yegT - Putative nucleoside transporter YegT, at 1,012,198 to 1,013,475 yegT MCAODC_21065: MCAODC_21065 - ADP-ribosylglycohydrolase family protein, at 1,013,472 to 1,014,476 _21065 MCAODC_21070: yegV - Uncharacterized sugar kinase YegV, at 1,014,473 to 1,015,438 yegV MCAODC_21075: yegW - Uncharacterized HTH-type transcriptional regulator YegW, at 1,015,412 to 1,016,158 yegW Position (kb) 1013 1014 1015Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 1012.510 kb on + strand, within yegTat 1012.510 kb on + strand, within yegTat 1012.510 kb on + strand, within yegTat 1012.510 kb on + strand, within yegTat 1012.510 kb on + strand, within yegTat 1012.510 kb on + strand, within yegTat 1012.510 kb on + strand, within yegTat 1012.510 kb on + strand, within yegTat 1012.511 kb on - strand, within yegTat 1012.512 kb on + strand, within yegTat 1012.513 kb on - strand, within yegTat 1012.677 kb on + strand, within yegTat 1012.678 kb on - strand, within yegTat 1012.779 kb on + strand, within yegTat 1012.780 kb on - strand, within yegTat 1012.780 kb on - strand, within yegTat 1012.780 kb on - strand, within yegTat 1012.879 kb on + strand, within yegTat 1012.879 kb on + strand, within yegTat 1012.879 kb on + strand, within yegTat 1012.880 kb on - strand, within yegTat 1012.880 kb on - strand, within yegTat 1012.882 kb on + strand, within yegTat 1012.882 kb on + strand, within yegTat 1012.900 kb on + strand, within yegTat 1013.132 kb on + strand, within yegTat 1013.133 kb on - strand, within yegTat 1013.146 kb on + strand, within yegTat 1013.150 kb on - strand, within yegTat 1013.161 kb on + strand, within yegTat 1013.167 kb on + strand, within yegTat 1013.167 kb on + strand, within yegTat 1013.167 kb on + strand, within yegTat 1013.167 kb on + strand, within yegTat 1013.167 kb on + strand, within yegTat 1013.168 kb on - strand, within yegTat 1013.168 kb on - strand, within yegTat 1013.168 kb on - strand, within yegTat 1013.168 kb on - strand, within yegTat 1013.168 kb on - strand, within yegTat 1013.193 kb on + strand, within yegTat 1013.486 kb on + strandat 1013.629 kb on - strand, within MCAODC_21065at 1013.629 kb on - strand, within MCAODC_21065at 1013.732 kb on + strand, within MCAODC_21065at 1013.733 kb on - strand, within MCAODC_21065at 1013.779 kb on + strand, within MCAODC_21065at 1013.780 kb on - strand, within MCAODC_21065at 1013.783 kb on - strand, within MCAODC_21065at 1013.783 kb on - strand, within MCAODC_21065at 1013.890 kb on + strand, within MCAODC_21065at 1013.891 kb on - strand, within MCAODC_21065at 1013.930 kb on + strand, within MCAODC_21065at 1013.931 kb on - strand, within MCAODC_21065at 1014.020 kb on + strand, within MCAODC_21065at 1014.406 kb on + strandat 1014.406 kb on + strandat 1014.510 kb on + strandat 1014.510 kb on + strandat 1014.511 kb on - strandat 1014.573 kb on - strand, within yegVat 1014.753 kb on + strand, within yegVat 1014.832 kb on + strand, within yegVat 1014.954 kb on + strand, within yegVat 1015.012 kb on + strand, within yegVat 1015.013 kb on - strand, within yegVat 1015.013 kb on - strand, within yegVat 1015.035 kb on + strand, within yegVat 1015.036 kb on - strand, within yegVat 1015.129 kb on - strand, within yegVat 1015.205 kb on + strand, within yegVat 1015.206 kb on - strand, within yegVat 1015.297 kb on - strand, within yegVat 1015.339 kb on - strand, within yegV

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_ECRC101
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1,012,510 + yegT MCAODC_21060 0.24 +0.1
1,012,510 + yegT MCAODC_21060 0.24 +4.0
1,012,510 + yegT MCAODC_21060 0.24 -0.5
1,012,510 + yegT MCAODC_21060 0.24 -0.1
1,012,510 + yegT MCAODC_21060 0.24 +0.6
1,012,510 + yegT MCAODC_21060 0.24 -0.1
1,012,510 + yegT MCAODC_21060 0.24 -0.4
1,012,510 + yegT MCAODC_21060 0.24 -0.9
1,012,511 - yegT MCAODC_21060 0.24 -1.5
1,012,512 + yegT MCAODC_21060 0.25 +1.1
1,012,513 - yegT MCAODC_21060 0.25 -0.9
1,012,677 + yegT MCAODC_21060 0.37 -1.9
1,012,678 - yegT MCAODC_21060 0.38 +0.4
1,012,779 + yegT MCAODC_21060 0.45 +0.4
1,012,780 - yegT MCAODC_21060 0.46 -1.1
1,012,780 - yegT MCAODC_21060 0.46 -1.4
1,012,780 - yegT MCAODC_21060 0.46 -0.6
1,012,879 + yegT MCAODC_21060 0.53 -0.1
1,012,879 + yegT MCAODC_21060 0.53 +0.4
1,012,879 + yegT MCAODC_21060 0.53 +0.5
1,012,880 - yegT MCAODC_21060 0.53 -1.3
1,012,880 - yegT MCAODC_21060 0.53 -0.1
1,012,882 + yegT MCAODC_21060 0.54 +0.9
1,012,882 + yegT MCAODC_21060 0.54 -1.6
1,012,900 + yegT MCAODC_21060 0.55 -0.5
1,013,132 + yegT MCAODC_21060 0.73 -0.1
1,013,133 - yegT MCAODC_21060 0.73 +0.3
1,013,146 + yegT MCAODC_21060 0.74 -0.2
1,013,150 - yegT MCAODC_21060 0.74 +0.8
1,013,161 + yegT MCAODC_21060 0.75 -0.5
1,013,167 + yegT MCAODC_21060 0.76 +0.6
1,013,167 + yegT MCAODC_21060 0.76 -0.5
1,013,167 + yegT MCAODC_21060 0.76 +0.0
1,013,167 + yegT MCAODC_21060 0.76 -0.9
1,013,167 + yegT MCAODC_21060 0.76 -0.0
1,013,168 - yegT MCAODC_21060 0.76 -0.4
1,013,168 - yegT MCAODC_21060 0.76 -1.3
1,013,168 - yegT MCAODC_21060 0.76 -1.2
1,013,168 - yegT MCAODC_21060 0.76 -1.2
1,013,168 - yegT MCAODC_21060 0.76 -1.2
1,013,193 + yegT MCAODC_21060 0.78 +0.1
1,013,486 + -1.6
1,013,629 - MCAODC_21065 0.16 +0.1
1,013,629 - MCAODC_21065 0.16 +0.9
1,013,732 + MCAODC_21065 0.26 +0.6
1,013,733 - MCAODC_21065 0.26 +1.6
1,013,779 + MCAODC_21065 0.31 -1.9
1,013,780 - MCAODC_21065 0.31 +1.0
1,013,783 - MCAODC_21065 0.31 -2.5
1,013,783 - MCAODC_21065 0.31 +1.0
1,013,890 + MCAODC_21065 0.42 -0.4
1,013,891 - MCAODC_21065 0.42 +2.3
1,013,930 + MCAODC_21065 0.46 +0.6
1,013,931 - MCAODC_21065 0.46 +0.5
1,014,020 + MCAODC_21065 0.55 +0.8
1,014,406 + -0.1
1,014,406 + +1.0
1,014,510 + -2.1
1,014,510 + +0.8
1,014,511 - +0.1
1,014,573 - yegV MCAODC_21070 0.10 +1.0
1,014,753 + yegV MCAODC_21070 0.29 -1.7
1,014,832 + yegV MCAODC_21070 0.37 +0.2
1,014,954 + yegV MCAODC_21070 0.50 -0.3
1,015,012 + yegV MCAODC_21070 0.56 -0.3
1,015,013 - yegV MCAODC_21070 0.56 +3.3
1,015,013 - yegV MCAODC_21070 0.56 +0.7
1,015,035 + yegV MCAODC_21070 0.58 +0.5
1,015,036 - yegV MCAODC_21070 0.58 -0.2
1,015,129 - yegV MCAODC_21070 0.68 -1.0
1,015,205 + yegV MCAODC_21070 0.76 +2.8
1,015,206 - yegV MCAODC_21070 0.76 +1.3
1,015,297 - yegV MCAODC_21070 0.85 -1.9
1,015,339 - yegV MCAODC_21070 0.90 +0.9

Or see this region's nucleotide sequence