Experiment: Control_ECRC101
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MCAODC_20870 and lysC overlap by 38 nucleotides lysC and lysB overlap by 14 nucleotides lysB and lysA overlap by 13 nucleotides lysA and MCAODC_20890 are separated by 14 nucleotides MCAODC_20890 and MCAODC_20895 overlap by 1 nucleotides MCAODC_20895 and MCAODC_20900 are separated by 3 nucleotides MCAODC_20900 and MCAODC_20905 overlap by 1 nucleotides
MCAODC_20870: MCAODC_20870 - Tail completion protein R, at 983,685 to 984,152
_20870
MCAODC_20875: lysC - Rz1-like lysis system protein LysC, at 984,115 to 984,273
lysC
MCAODC_20880: lysB - Rz-like lysis system protein LysB, at 984,260 to 984,685
lysB
MCAODC_20885: lysA - Putative antiholin, at 984,673 to 985,098
lysA
MCAODC_20890: MCAODC_20890 - Endolysin, at 985,113 to 985,610
_20890
MCAODC_20895: MCAODC_20895 - Holin, at 985,610 to 985,891
_20895
MCAODC_20900: MCAODC_20900 - phage tail protein, at 985,895 to 986,098
_20900
MCAODC_20905: MCAODC_20905 - Head completion/stabilization protein, at 986,098 to 986,607
_20905
Position (kb) 985
986 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 984.174 kb on + strand, within lysC at 984.174 kb on + strand, within lysC at 984.174 kb on + strand, within lysC at 984.175 kb on - strand, within lysC at 984.184 kb on + strand, within lysC at 984.239 kb on - strand, within lysC at 984.410 kb on + strand, within lysB at 984.720 kb on + strand, within lysA at 984.721 kb on - strand, within lysA at 984.724 kb on + strand, within lysA at 984.725 kb on - strand, within lysA at 984.725 kb on - strand, within lysA at 984.925 kb on + strand, within lysA at 984.925 kb on + strand, within lysA at 984.926 kb on - strand, within lysA at 984.929 kb on + strand, within lysA at 984.929 kb on + strand, within lysA at 984.930 kb on - strand, within lysA at 984.930 kb on - strand, within lysA at 984.941 kb on + strand, within lysA at 984.942 kb on - strand, within lysA at 984.942 kb on - strand, within lysA at 984.973 kb on - strand, within lysA at 984.973 kb on - strand, within lysA at 985.114 kb on + strand at 985.212 kb on - strand, within MCAODC_20890 at 985.367 kb on - strand, within MCAODC_20890 at 985.367 kb on - strand, within MCAODC_20890 at 985.459 kb on + strand, within MCAODC_20890 at 985.459 kb on + strand, within MCAODC_20890 at 985.501 kb on - strand, within MCAODC_20890 at 985.501 kb on - strand, within MCAODC_20890 at 985.511 kb on - strand, within MCAODC_20890 at 985.583 kb on + strand at 985.599 kb on - strand at 985.896 kb on + strand at 986.043 kb on + strand, within MCAODC_20900 at 986.136 kb on + strand at 986.286 kb on - strand, within MCAODC_20905 at 986.347 kb on - strand, within MCAODC_20905 at 986.381 kb on + strand, within MCAODC_20905 at 986.463 kb on + strand, within MCAODC_20905 at 986.463 kb on + strand, within MCAODC_20905 at 986.463 kb on + strand, within MCAODC_20905 at 986.514 kb on + strand, within MCAODC_20905 at 986.593 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECRC101 remove 984,174 + lysC MCAODC_20875 0.37 +1.2 984,174 + lysC MCAODC_20875 0.37 -0.2 984,174 + lysC MCAODC_20875 0.37 +1.7 984,175 - lysC MCAODC_20875 0.38 -0.8 984,184 + lysC MCAODC_20875 0.43 +1.5 984,239 - lysC MCAODC_20875 0.78 -0.3 984,410 + lysB MCAODC_20880 0.35 -1.4 984,720 + lysA MCAODC_20885 0.11 +1.1 984,721 - lysA MCAODC_20885 0.11 -0.3 984,724 + lysA MCAODC_20885 0.12 -0.7 984,725 - lysA MCAODC_20885 0.12 -0.2 984,725 - lysA MCAODC_20885 0.12 -1.0 984,925 + lysA MCAODC_20885 0.59 +0.7 984,925 + lysA MCAODC_20885 0.59 +0.7 984,926 - lysA MCAODC_20885 0.59 +0.6 984,929 + lysA MCAODC_20885 0.60 +0.9 984,929 + lysA MCAODC_20885 0.60 +0.5 984,930 - lysA MCAODC_20885 0.60 +0.5 984,930 - lysA MCAODC_20885 0.60 +0.8 984,941 + lysA MCAODC_20885 0.63 +2.6 984,942 - lysA MCAODC_20885 0.63 -0.2 984,942 - lysA MCAODC_20885 0.63 -2.0 984,973 - lysA MCAODC_20885 0.70 -1.1 984,973 - lysA MCAODC_20885 0.70 +0.0 985,114 + -0.5 985,212 - MCAODC_20890 0.20 +1.4 985,367 - MCAODC_20890 0.51 +1.7 985,367 - MCAODC_20890 0.51 +1.1 985,459 + MCAODC_20890 0.69 +0.4 985,459 + MCAODC_20890 0.69 -0.3 985,501 - MCAODC_20890 0.78 -0.3 985,501 - MCAODC_20890 0.78 +0.0 985,511 - MCAODC_20890 0.80 +0.4 985,583 + -2.9 985,599 - +0.2 985,896 + +0.9 986,043 + MCAODC_20900 0.73 -1.1 986,136 + -0.3 986,286 - MCAODC_20905 0.37 +1.1 986,347 - MCAODC_20905 0.49 -1.1 986,381 + MCAODC_20905 0.55 -0.2 986,463 + MCAODC_20905 0.72 +2.5 986,463 + MCAODC_20905 0.72 +0.2 986,463 + MCAODC_20905 0.72 -0.4 986,514 + MCAODC_20905 0.82 -3.1 986,593 - -1.3
Or see this region's nucleotide sequence