Experiment: Control_ECRC101
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MCAODC_20815 and spoIVCA are separated by 59 nucleotides spoIVCA and MCAODC_20825 are separated by 30 nucleotides MCAODC_20825 and MCAODC_20830 overlap by 1 nucleotides MCAODC_20830 and MCAODC_20835 overlap by 29 nucleotides
MCAODC_20815: MCAODC_20815 - phage tail protein, at 976,039 to 977,229
_20815
MCAODC_20820: spoIVCA - DNA-invertase, at 977,289 to 977,882
spoIVCA
MCAODC_20825: MCAODC_20825 - phage tail protein, at 977,913 to 978,443
_20825
MCAODC_20830: MCAODC_20830 - phage tail protein, at 978,443 to 979,045
_20830
MCAODC_20835: MCAODC_20835 - tail fiber assembly protein, at 979,017 to 979,460
_20835
Position (kb) 977
978
979 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 976.917 kb on + strand, within MCAODC_20815 at 977.046 kb on + strand, within MCAODC_20815 at 977.235 kb on + strand at 977.248 kb on - strand at 977.261 kb on + strand at 977.604 kb on - strand, within spoIVCA at 977.604 kb on - strand, within spoIVCA at 977.679 kb on - strand, within spoIVCA at 977.691 kb on - strand, within spoIVCA at 977.728 kb on - strand, within spoIVCA at 977.825 kb on + strand at 977.826 kb on - strand at 977.866 kb on - strand at 977.866 kb on - strand at 977.866 kb on - strand at 977.869 kb on + strand at 977.869 kb on + strand at 977.870 kb on - strand at 977.877 kb on - strand at 978.095 kb on + strand, within MCAODC_20825 at 978.122 kb on + strand, within MCAODC_20825 at 978.237 kb on - strand, within MCAODC_20825 at 978.309 kb on - strand, within MCAODC_20825 at 978.309 kb on - strand, within MCAODC_20825 at 978.317 kb on + strand, within MCAODC_20825 at 978.344 kb on + strand, within MCAODC_20825 at 978.423 kb on + strand at 978.424 kb on - strand at 978.424 kb on - strand at 978.503 kb on + strand at 978.533 kb on - strand, within MCAODC_20830 at 978.591 kb on + strand, within MCAODC_20830 at 978.659 kb on + strand, within MCAODC_20830 at 978.659 kb on + strand, within MCAODC_20830 at 978.659 kb on + strand, within MCAODC_20830 at 978.659 kb on + strand, within MCAODC_20830 at 978.660 kb on - strand, within MCAODC_20830 at 978.738 kb on - strand, within MCAODC_20830 at 978.738 kb on - strand, within MCAODC_20830 at 978.738 kb on - strand, within MCAODC_20830 at 978.748 kb on + strand, within MCAODC_20830 at 978.748 kb on + strand, within MCAODC_20830 at 978.748 kb on + strand, within MCAODC_20830 at 978.748 kb on + strand, within MCAODC_20830 at 978.749 kb on - strand, within MCAODC_20830 at 978.781 kb on + strand, within MCAODC_20830 at 978.955 kb on + strand, within MCAODC_20830 at 978.956 kb on - strand, within MCAODC_20830 at 978.956 kb on - strand, within MCAODC_20830 at 978.972 kb on - strand, within MCAODC_20830 at 979.115 kb on + strand, within MCAODC_20835 at 979.115 kb on + strand, within MCAODC_20835 at 979.115 kb on + strand, within MCAODC_20835
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECRC101 remove 976,917 + MCAODC_20815 0.74 +0.7 977,046 + MCAODC_20815 0.85 +4.3 977,235 + -0.0 977,248 - +2.3 977,261 + -3.0 977,604 - spoIVCA MCAODC_20820 0.53 -0.1 977,604 - spoIVCA MCAODC_20820 0.53 +0.3 977,679 - spoIVCA MCAODC_20820 0.66 -1.5 977,691 - spoIVCA MCAODC_20820 0.68 +0.4 977,728 - spoIVCA MCAODC_20820 0.74 -0.3 977,825 + -1.7 977,826 - +1.7 977,866 - -2.1 977,866 - +0.1 977,866 - +0.2 977,869 + +0.0 977,869 + -0.0 977,870 - +1.1 977,877 - +0.4 978,095 + MCAODC_20825 0.34 +0.8 978,122 + MCAODC_20825 0.39 +1.0 978,237 - MCAODC_20825 0.61 -0.3 978,309 - MCAODC_20825 0.75 +1.1 978,309 - MCAODC_20825 0.75 +1.9 978,317 + MCAODC_20825 0.76 -0.4 978,344 + MCAODC_20825 0.81 +0.7 978,423 + -0.1 978,424 - -1.0 978,424 - +0.3 978,503 + +0.5 978,533 - MCAODC_20830 0.15 -0.9 978,591 + MCAODC_20830 0.25 +0.3 978,659 + MCAODC_20830 0.36 -1.0 978,659 + MCAODC_20830 0.36 -0.9 978,659 + MCAODC_20830 0.36 +1.0 978,659 + MCAODC_20830 0.36 +0.2 978,660 - MCAODC_20830 0.36 +0.7 978,738 - MCAODC_20830 0.49 +0.8 978,738 - MCAODC_20830 0.49 +0.1 978,738 - MCAODC_20830 0.49 +1.9 978,748 + MCAODC_20830 0.51 +0.4 978,748 + MCAODC_20830 0.51 +1.0 978,748 + MCAODC_20830 0.51 -1.7 978,748 + MCAODC_20830 0.51 +0.5 978,749 - MCAODC_20830 0.51 -1.4 978,781 + MCAODC_20830 0.56 -0.9 978,955 + MCAODC_20830 0.85 +1.1 978,956 - MCAODC_20830 0.85 -0.6 978,956 - MCAODC_20830 0.85 -4.0 978,972 - MCAODC_20830 0.88 +0.1 979,115 + MCAODC_20835 0.22 +0.7 979,115 + MCAODC_20835 0.22 -0.5 979,115 + MCAODC_20835 0.22 -1.1
Or see this region's nucleotide sequence