Experiment: Control_ECRC101
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt plaP and yoeI overlap by 11 nucleotides yoeI and yeeY are separated by 214 nucleotides
MCAODC_20390: plaP - putrescine/proton symporter PlaP, at 886,101 to 887,459
plaP
MCAODC_20395: yoeI - Uncharacterized protein YoeI, at 887,449 to 887,511
yoeI
MCAODC_20405: yeeY - Uncharacterized HTH-type transcriptional regulator YeeY, at 887,726 to 888,676
yeeY
Position (kb) 887
888 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 886.474 kb on - strand, within plaP at 886.474 kb on - strand, within plaP at 886.474 kb on - strand, within plaP at 886.474 kb on - strand, within plaP at 886.474 kb on - strand, within plaP at 886.478 kb on - strand, within plaP at 886.523 kb on - strand, within plaP at 886.625 kb on - strand, within plaP at 886.625 kb on - strand, within plaP at 886.625 kb on - strand, within plaP at 886.684 kb on + strand, within plaP at 886.699 kb on + strand, within plaP at 886.700 kb on - strand, within plaP at 886.700 kb on - strand, within plaP at 886.904 kb on + strand, within plaP at 886.927 kb on - strand, within plaP at 886.969 kb on - strand, within plaP at 887.040 kb on - strand, within plaP at 887.102 kb on - strand, within plaP at 887.207 kb on - strand, within plaP at 887.207 kb on - strand, within plaP at 887.211 kb on - strand, within plaP at 887.211 kb on - strand, within plaP at 887.211 kb on - strand, within plaP at 887.211 kb on - strand, within plaP at 887.211 kb on - strand, within plaP at 887.211 kb on - strand, within plaP at 887.213 kb on - strand, within plaP at 887.297 kb on - strand, within plaP at 887.297 kb on - strand, within plaP at 887.370 kb on - strand at 887.370 kb on - strand at 887.371 kb on + strand at 887.371 kb on + strand at 887.372 kb on - strand at 887.372 kb on - strand at 887.372 kb on - strand at 887.372 kb on - strand at 887.372 kb on - strand at 887.372 kb on - strand at 887.372 kb on - strand at 887.372 kb on - strand at 887.372 kb on - strand at 887.372 kb on - strand at 887.389 kb on - strand at 887.389 kb on - strand at 887.389 kb on - strand at 887.389 kb on - strand at 887.401 kb on - strand at 887.401 kb on - strand at 887.474 kb on - strand, within yoeI at 887.556 kb on + strand at 887.556 kb on + strand at 887.556 kb on + strand at 887.556 kb on + strand at 887.556 kb on + strand at 887.557 kb on - strand at 887.557 kb on - strand at 887.557 kb on - strand at 887.557 kb on - strand at 887.588 kb on - strand at 887.643 kb on - strand at 887.902 kb on + strand, within yeeY at 887.926 kb on - strand, within yeeY at 887.957 kb on - strand, within yeeY at 888.031 kb on + strand, within yeeY at 888.031 kb on + strand, within yeeY at 888.032 kb on - strand, within yeeY at 888.220 kb on + strand, within yeeY at 888.220 kb on + strand, within yeeY at 888.220 kb on + strand, within yeeY at 888.220 kb on + strand, within yeeY at 888.277 kb on + strand, within yeeY at 888.299 kb on - strand, within yeeY at 888.299 kb on - strand, within yeeY at 888.309 kb on + strand, within yeeY at 888.310 kb on - strand, within yeeY at 888.310 kb on - strand, within yeeY
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECRC101 remove 886,474 - plaP MCAODC_20390 0.27 -0.5 886,474 - plaP MCAODC_20390 0.27 -0.8 886,474 - plaP MCAODC_20390 0.27 -2.5 886,474 - plaP MCAODC_20390 0.27 +1.3 886,474 - plaP MCAODC_20390 0.27 +0.2 886,478 - plaP MCAODC_20390 0.28 -0.5 886,523 - plaP MCAODC_20390 0.31 +0.2 886,625 - plaP MCAODC_20390 0.39 -2.3 886,625 - plaP MCAODC_20390 0.39 +0.8 886,625 - plaP MCAODC_20390 0.39 +1.3 886,684 + plaP MCAODC_20390 0.43 +2.2 886,699 + plaP MCAODC_20390 0.44 -1.3 886,700 - plaP MCAODC_20390 0.44 -0.9 886,700 - plaP MCAODC_20390 0.44 +0.7 886,904 + plaP MCAODC_20390 0.59 +0.3 886,927 - plaP MCAODC_20390 0.61 +1.2 886,969 - plaP MCAODC_20390 0.64 -0.0 887,040 - plaP MCAODC_20390 0.69 +0.6 887,102 - plaP MCAODC_20390 0.74 +0.2 887,207 - plaP MCAODC_20390 0.81 +0.3 887,207 - plaP MCAODC_20390 0.81 +0.4 887,211 - plaP MCAODC_20390 0.82 +1.8 887,211 - plaP MCAODC_20390 0.82 +1.5 887,211 - plaP MCAODC_20390 0.82 -0.8 887,211 - plaP MCAODC_20390 0.82 +0.3 887,211 - plaP MCAODC_20390 0.82 -0.1 887,211 - plaP MCAODC_20390 0.82 +1.6 887,213 - plaP MCAODC_20390 0.82 +0.4 887,297 - plaP MCAODC_20390 0.88 -0.1 887,297 - plaP MCAODC_20390 0.88 -1.0 887,370 - -0.2 887,370 - +0.3 887,371 + -1.4 887,371 + -0.3 887,372 - -0.8 887,372 - -0.1 887,372 - +0.6 887,372 - -2.1 887,372 - +1.0 887,372 - -1.6 887,372 - -0.3 887,372 - -1.1 887,372 - -0.0 887,372 - +1.4 887,389 - -0.0 887,389 - -1.9 887,389 - +0.9 887,389 - +0.0 887,401 - +0.1 887,401 - -1.5 887,474 - yoeI MCAODC_20395 0.40 +1.0 887,556 + +2.6 887,556 + +0.3 887,556 + +1.6 887,556 + -0.8 887,556 + -1.9 887,557 - +2.0 887,557 - -0.6 887,557 - +1.1 887,557 - -0.5 887,588 - -0.2 887,643 - +1.0 887,902 + yeeY MCAODC_20405 0.19 -3.1 887,926 - yeeY MCAODC_20405 0.21 -0.6 887,957 - yeeY MCAODC_20405 0.24 +0.2 888,031 + yeeY MCAODC_20405 0.32 +1.0 888,031 + yeeY MCAODC_20405 0.32 +0.0 888,032 - yeeY MCAODC_20405 0.32 -0.5 888,220 + yeeY MCAODC_20405 0.52 +2.5 888,220 + yeeY MCAODC_20405 0.52 -0.9 888,220 + yeeY MCAODC_20405 0.52 +0.7 888,220 + yeeY MCAODC_20405 0.52 -1.2 888,277 + yeeY MCAODC_20405 0.58 -0.1 888,299 - yeeY MCAODC_20405 0.60 +2.5 888,299 - yeeY MCAODC_20405 0.60 +0.2 888,309 + yeeY MCAODC_20405 0.61 +1.5 888,310 - yeeY MCAODC_20405 0.61 -2.9 888,310 - yeeY MCAODC_20405 0.61 -1.0
Or see this region's nucleotide sequence