Experiment: Control_ECRC101
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt lexA and MCAODC_20145 are separated by 274 nucleotides MCAODC_20145 and MCAODC_20150 are separated by 480 nucleotides MCAODC_20150 and MCAODC_20155 overlap by 4 nucleotides MCAODC_20155 and MCAODC_20160 are separated by 95 nucleotides
MCAODC_20140: lexA - XRE family transcriptional regulator, at 835,399 to 836,043
lexA
MCAODC_20145: MCAODC_20145 - DUF1391 domain-containing protein, at 836,318 to 836,470
_20145
MCAODC_20150: MCAODC_20150 - cell division inhibitor, at 836,951 to 837,139
_20150
MCAODC_20155: MCAODC_20155 - DUF1482 domain-containing protein, at 837,136 to 837,324
_20155
MCAODC_20160: MCAODC_20160 - exonuclease, at 837,420 to 839,891
_20160
Position (kb) 836
837 Strain fitness (log2 ratio) -2
-1
0
1 at 836.145 kb on + strand at 836.146 kb on - strand at 836.146 kb on - strand at 836.402 kb on + strand, within MCAODC_20145 at 836.402 kb on + strand, within MCAODC_20145 at 836.402 kb on + strand, within MCAODC_20145 at 836.563 kb on - strand at 836.690 kb on + strand at 836.690 kb on + strand at 836.690 kb on + strand at 836.696 kb on + strand at 836.773 kb on - strand at 836.878 kb on - strand at 837.080 kb on - strand, within MCAODC_20150 at 837.176 kb on + strand, within MCAODC_20155
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECRC101 remove 836,145 + +0.1 836,146 - +0.1 836,146 - -1.9 836,402 + MCAODC_20145 0.55 -2.3 836,402 + MCAODC_20145 0.55 +0.6 836,402 + MCAODC_20145 0.55 +1.2 836,563 - +0.4 836,690 + -0.8 836,690 + +0.4 836,690 + -0.2 836,696 + +0.8 836,773 - +0.9 836,878 - -0.1 837,080 - MCAODC_20150 0.68 -1.1 837,176 + MCAODC_20155 0.21 +0.9
Or see this region's nucleotide sequence