Experiment: Control_ECRC101
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MCAODC_19985 and MCAODC_19990 are separated by 7 nucleotides MCAODC_19990 and MCAODC_19995 are separated by 12 nucleotides MCAODC_19995 and MCAODC_20000 are separated by 155 nucleotides MCAODC_20000 and MCAODC_20005 are separated by 42 nucleotides
MCAODC_19985: MCAODC_19985 - lysis protein, at 820,328 to 820,795
_19985
MCAODC_19990: MCAODC_19990 - hypothetical protein, at 820,803 to 820,934
_19990
MCAODC_19995: MCAODC_19995 - hypothetical protein, at 820,947 to 821,129
_19995
MCAODC_20000: MCAODC_20000 - SAR-endolysin, at 821,285 to 821,818
_20000
MCAODC_20005: MCAODC_20005 - DUF1327 domain-containing protein, at 821,861 to 822,193
_20005
Position (kb) 820
821
822 Strain fitness (log2 ratio) -1
0
1
2
3 at 819.999 kb on + strand at 820.087 kb on + strand at 820.337 kb on - strand at 820.636 kb on + strand, within MCAODC_19985 at 820.827 kb on + strand, within MCAODC_19990 at 820.856 kb on + strand, within MCAODC_19990 at 820.856 kb on + strand, within MCAODC_19990 at 820.857 kb on - strand, within MCAODC_19990 at 820.893 kb on + strand, within MCAODC_19990 at 820.894 kb on - strand, within MCAODC_19990 at 820.894 kb on - strand, within MCAODC_19990 at 820.938 kb on + strand at 820.939 kb on - strand at 820.939 kb on - strand at 820.939 kb on - strand at 820.985 kb on - strand, within MCAODC_19995 at 821.007 kb on - strand, within MCAODC_19995 at 821.024 kb on + strand, within MCAODC_19995 at 821.025 kb on - strand, within MCAODC_19995 at 821.025 kb on - strand, within MCAODC_19995 at 821.027 kb on + strand, within MCAODC_19995 at 821.346 kb on + strand, within MCAODC_20000 at 821.539 kb on + strand, within MCAODC_20000 at 821.569 kb on + strand, within MCAODC_20000 at 821.694 kb on + strand, within MCAODC_20000
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECRC101 remove 819,999 + -1.1 820,087 + -0.6 820,337 - +1.3 820,636 + MCAODC_19985 0.66 +1.4 820,827 + MCAODC_19990 0.18 -1.3 820,856 + MCAODC_19990 0.40 +1.3 820,856 + MCAODC_19990 0.40 -0.1 820,857 - MCAODC_19990 0.41 +0.1 820,893 + MCAODC_19990 0.68 +0.9 820,894 - MCAODC_19990 0.69 +0.9 820,894 - MCAODC_19990 0.69 -0.0 820,938 + +0.3 820,939 - +0.8 820,939 - -1.6 820,939 - -0.9 820,985 - MCAODC_19995 0.21 -0.5 821,007 - MCAODC_19995 0.33 +1.6 821,024 + MCAODC_19995 0.42 +1.5 821,025 - MCAODC_19995 0.43 +1.4 821,025 - MCAODC_19995 0.43 +1.6 821,027 + MCAODC_19995 0.44 +3.1 821,346 + MCAODC_20000 0.11 -0.4 821,539 + MCAODC_20000 0.48 -0.6 821,569 + MCAODC_20000 0.53 +1.6 821,694 + MCAODC_20000 0.77 +1.5
Or see this region's nucleotide sequence