Strain Fitness in Escherichia coli ECRC101 around MCAODC_19980

Experiment: Control_ECRC101

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntnu1 and MCAODC_19980 are separated by 700 nucleotidesMCAODC_19980 and MCAODC_19985 are separated by 464 nucleotidesMCAODC_19985 and MCAODC_19990 are separated by 7 nucleotides MCAODC_19975: nu1 - terminase, at 818,339 to 818,848 nu1 MCAODC_19980: MCAODC_19980 - PerC family transcriptional regulator, at 819,549 to 819,863 _19980 MCAODC_19985: MCAODC_19985 - lysis protein, at 820,328 to 820,795 _19985 MCAODC_19990: MCAODC_19990 - hypothetical protein, at 820,803 to 820,934 _19990 Position (kb) 819 820Strain fitness (log2 ratio) -1 0 1 2at 819.317 kb on + strandat 819.675 kb on + strand, within MCAODC_19980at 819.999 kb on + strandat 820.087 kb on + strandat 820.337 kb on - strandat 820.636 kb on + strand, within MCAODC_19985at 820.827 kb on + strand, within MCAODC_19990at 820.856 kb on + strand, within MCAODC_19990at 820.856 kb on + strand, within MCAODC_19990at 820.857 kb on - strand, within MCAODC_19990

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_ECRC101
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819,317 + +0.3
819,675 + MCAODC_19980 0.40 +1.9
819,999 + -1.1
820,087 + -0.6
820,337 - +1.3
820,636 + MCAODC_19985 0.66 +1.4
820,827 + MCAODC_19990 0.18 -1.3
820,856 + MCAODC_19990 0.40 +1.3
820,856 + MCAODC_19990 0.40 -0.1
820,857 - MCAODC_19990 0.41 +0.1

Or see this region's nucleotide sequence